Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Forward (+)

10702810 .. 10707314

Gene Structure 4505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGACCCAGGTCCGTTCGCCGGAGCCGAACCGCGCCGTGTTGCCGGAATTTCGTTCCTGCCCATCGTCCTCGCCGCCATTGCCGGCGACCAGTCCCGATCCGTCGGCAATTGGGCCGGAGTCTTGGGCCGGAGCCGAGCGGGCCACCCGGGATATACTGTCCAAGATTCAGTCCACGGCGGCGACTCACCGGAGAAGGAAGGATATCATTGTATATGTGCAGAGCCTCATCACTTGTAACGTGGGCTGTCAGGTTTTTCCTTATGGGTCAGTTCCATTAAAGACATATCTTCCCGATGGAGATATAGACTTGACGGTTTTCACTGGCAGTGCGCACCTTGAGGATGTCCTTGTAACTCATGTTCATGCTGTTCTGAAGGGGGAAGAGAATAATGAAGCTGCTCAATATCAAGTGAAGGATGTCCATCGCATTGATGCTGAGGTTAAACTTGTAAAATGCATTGTTCAAAATATGATTGTAGATATATCCTTCAATCAGTTAGGAGGACTTTCTACACTACGCTTTCTTGAACAGGTTGATCACTATATTGGCAAAGATCATATTTTCAAACGCAGCATTATTCTGATAAAAGCCTGGTGCTACTATGAGAGTCGTATTCTTGGTGCTCATCATGGTTTAATTTCAACATATGCTTTGGAAACATTAGTCCTATATATATTCCATCTTTTTCATTCTTCTCTAGATGGCCCTTTAACAGTCCTCTACAGATTTTTGGATTACTTCAGCAAATTTGATTGGGAGAAATATTGTGTAAGTTTAAATGGACCAGTCTGCAAATCCTCCCTACCTGATATTGTGGCTGAAGTACCAGATAATGGAGGGGATGATGTACTGCTAAGTGAAGAGTTTATTAGAAACTGTGTAGACATGTTCTCTGTTCCATCAAAGGGGTGTAGCTTCTATCGAATATGTAGTGCTTTTAAATATGGAGCTCGCAAGCTAGGCTGGATTCTCTTGTTACCAGCAGAGAGAATATCAGATGAACTTAACAAGTTTTTCGCTAACACTTTGGATAGGCATGAAAGTAAATGCCAGACTACTGTGCAAAATAATGCCTTGTTGGAGCTTGGTGAAGATTTGGACAGTCATTGTTTGAACCTGCAATATAGTCTGATTGGCCAGAGGTGTGCTGCATCACCTCCTTTATTGCCCAGTCCTCCCTTGTCACCTCAACCATGGAAAGAGAATCCATGGGATGCTACCTGCGAAGCCCTACAGTCCCAGCACAATATTAATTCTCAAACTAATGCAAATGGTATTCCTTGGGGAACACATGCGTATCACACAAATGTTGCCAGTTTTTTTGTTCCTCCATTCAGAGAAGAGAAGAACAAACCACGAGGAACAGGGACGTACATCCCCAATGTGTCTTTTCAGAATTATCGTCCCTACAAGGATAGACACTTGCCTGGAAGGGGAAGGAAAGAGGCAGCTGGAACTTATGCTCCATTTCAGAGACAAACTTTCAATTATGGCTTTCCTGCAGCCTCTCAAGAGTCAATTGCACCTGGAGAATGCAACCATGAGCTCTCAGAAGCTGAGTACCCAGTTTTATGTAATGCAAACTCTGCAACATCAGATTACCATCAACCTCAGCTTTCAATTTGGGAGCCTTTCCATGAAAATGGTTTCTCCAAATCCCCTGACAAACCTGAGTCTAGATCCTCCTCCCCTCAATCATGGGAAGAAGTACCCATGCCACAACTGGACAGTTTACGGTTATCAGGAGTCGATGAAGAGAGGATTGACGAGCAGGCATTCCATCTGAAGGATGAAGCTGATTTCCCCCGCTCACCCCTCGACTGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_assoc

Protein Analysis

610

Amino Acids

68.51

Weight (kDa)

5.62

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	49 - 176	3.2e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	183 - 303	2.8e-65	PAP/OAS1 substrate-binding domain
PAP-OAS1	PF26180	306 - 344	4.1e-09	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	333
Acc36I	ACCTGC	2 cut(s)	1128, 1232
AccB7I	CCANNNNNTGG	1 cut(s)	836
AccBSI	CCGCTC	2 cut(s)	139, 1812
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	33
AciI	CCGC	5 cut(s)	31, 74, 139, 179, 1810
AclWI	GGATC	2 cut(s)	92, 1677
AcoI	YGGCCR	1 cut(s)	1138
AcsI	RAATTY	2 cut(s)	47, 749
AcuI	CTGAAG	4 cut(s)	395, 727, 843, 1808
AfaI	GTAC	5 cut(s)	828, 852, 1376, 1565, 1713
AfiI	CCNNNNNNNGG	5 cut(s)	19, 836, 908, 1436, 1789
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	8 cut(s)	467, 493, 530, 568, 645, 1117, 1489, 1623
AjnI	CCWGG	4 cut(s)	6, 593, 1429, 1528
AloI	GAACNNNNNNTCC	2 cut(s)	1450, 1482
Alw21I	GWGCWC	3 cut(s)	628, 955, 1551
Alw26I	GTCTC	1 cut(s)	1471
AlwI	GGATC	2 cut(s)	92, 1677
AlwNI	CAGNNNCTG	1 cut(s)	1559
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	5 cut(s)	113, 126, 141, 706, 1138
ApeKI	GCWGC	5 cut(s)	398, 573, 1151, 1451, 1505
ApoI	RAATTY	2 cut(s)	47, 749
AseI	ATTAAT	1 cut(s)	1254
AspLEI	GCGC	2 cut(s)	35, 334
AspS9I	GGNCC	6 cut(s)	10, 113, 126, 141, 707, 785
AsuC2I	CCSGG	2 cut(s)	148, 149
AsuHPI	GGTGA	5 cut(s)	179, 1103, 1149, 1179, 1806
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	10, 785
BaeI	ACNNNNGTAYC	2 cut(s)	1283, 1316
BalI	TGGCCA	1 cut(s)	1140
BanII	GRGCYC	2 cut(s)	955, 1551
BauI	CACGAG	1 cut(s)	1359
Bbv12I	GWGCWC	3 cut(s)	628, 955, 1551
BbvCI	CCTCAGC	2 cut(s)	438, 1614
BbvI	GCAGC	5 cut(s)	385, 585, 1138, 1463, 1517
BccI	CCATC	8 cut(s)	70, 290, 432, 690, 698, 910, 1614, 1791
BceAI	ACGGC	2 cut(s)	20, 192
BciT130I	CCWGG	4 cut(s)	8, 595, 1431, 1530
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	148, 149
BcoDI	GTCTC	1 cut(s)	1471
BfaI	CTAG	3 cut(s)	701, 962, 1680
BfmI	CTRYAG	3 cut(s)	724, 1235, 1503
BfuAI	ACCTGC	2 cut(s)	1128, 1232
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	7 cut(s)	74, 180, 399, 574, 1152, 1452, 1506
BlsI	GCNGC	7 cut(s)	75, 181, 400, 575, 1153, 1453, 1507
Bme1390I	CCNGG	6 cut(s)	8, 148, 149, 595, 1431, 1530
Bme18I	GGWCC	2 cut(s)	10, 785
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	6 cut(s)	10, 113, 126, 141, 707, 785
BmiI	GGNNCC	3 cut(s)	24, 133, 1632
BmrFI	CCNGG	6 cut(s)	8, 148, 149, 595, 1431, 1530
BmrI	ACTGGG	2 cut(s)	1167, 1562
BmsI	GCATC	3 cut(s)	424, 1163, 1207
BmuI	ACTGGG	2 cut(s)	1167, 1562
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	1551
Bpu10I	CCTNAGC	2 cut(s)	438, 1614
BpuEI	CTTGAG	2 cut(s)	359, 1497
BpuMI	CCSGG	2 cut(s)	148, 149
BsaBI	GATNNNNATC	2 cut(s)	423, 1605
BsaJI	CCNNGG	6 cut(s)	6, 147, 174, 1196, 1211, 1283
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	1450, 1480
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 836, 908, 1436, 1789
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	7 cut(s)	90, 328, 788, 1173, 1317, 1568, 1731
Bse3DI	GCAATG	1 cut(s)	77
Bse8I	GATNNNNATC	2 cut(s)	423, 1605
BseBI	CCWGG	4 cut(s)	8, 595, 1431, 1530
BseDI	CCNNGG	6 cut(s)	6, 147, 174, 1196, 1211, 1283
BseGI	GGATG	6 cut(s)	349, 424, 850, 1222, 1377, 1798
BseJI	GATNNNNATC	2 cut(s)	423, 1605
BseLI	CCNNNNNNNGG	5 cut(s)	19, 836, 908, 1436, 1789
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	5 cut(s)	429, 1551, 1566, 1628, 1665
BseNI	ACTGG	7 cut(s)	90, 328, 788, 1173, 1317, 1568, 1731
BseRI	GAGGAG	1 cut(s)	1678
BseXI	GCAGC	5 cut(s)	385, 585, 1138, 1463, 1517
BseYI	CCCAGC	1 cut(s)	1242
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	5 cut(s)	115, 128, 143, 708, 1140
BsiHKAI	GWGCWC	3 cut(s)	628, 955, 1551
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	7 cut(s)	20, 44, 83, 116, 129, 148, 190
BslFI	GGGAC	4 cut(s)	78, 1225, 1384, 1392
BslI	CCNNNNNNNGG	5 cut(s)	19, 836, 908, 1436, 1789
BsmAI	GTCTC	1 cut(s)	1471
BsmFI	GGGAC	4 cut(s)	78, 1225, 1384, 1392
BsmI	GAATGC	2 cut(s)	1541, 1778
BsnI	GGCC	5 cut(s)	115, 128, 143, 708, 1140
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	3 cut(s)	628, 955, 1551
Bsp143I	GATC	4 cut(s)	97, 538, 556, 1682
Bsp19I	CCATGG	2 cut(s)	1196, 1211
BspACI	CCGC	5 cut(s)	31, 74, 139, 179, 1810
BspANI	GGCC	5 cut(s)	115, 128, 143, 708, 1140
BspCNI	CTCAG	5 cut(s)	430, 1552, 1565, 1627, 1666
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	24, 133, 1632
BspMAI	CTGCAG	1 cut(s)	1507
BspMI	ACCTGC	2 cut(s)	1128, 1232
BspPI	GGATC	2 cut(s)	92, 1677
BsrBI	CCGCTC	2 cut(s)	139, 1812
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	7 cut(s)	90, 328, 788, 1173, 1317, 1568, 1731
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	6 cut(s)	6, 147, 174, 1196, 1211, 1283
BssMI	GATC	4 cut(s)	97, 538, 556, 1682
BssSI	CACGAG	1 cut(s)	1359
BssT1I	CCWWGG	3 cut(s)	1196, 1211, 1283
Bst2BI	CACGAG	1 cut(s)	1359
Bst2UI	CCWGG	4 cut(s)	8, 595, 1431, 1530
Bst4CI	ACNGT	9 cut(s)	159, 316, 718, 881, 1063, 1106, 1239, 1733, 1740
Bst6I	CTCTTC	4 cut(s)	378, 858, 1338, 1752
BstAPI	GCANNNNNTGC	1 cut(s)	1589
BstC8I	GCNNGC	5 cut(s)	84, 141, 955, 959, 1776
BstDEI	CTNAG	6 cut(s)	438, 857, 1552, 1560, 1614, 1674
BstDSI	CCRYGG	3 cut(s)	174, 1196, 1211
BstF5I	GGATG	6 cut(s)	349, 424, 850, 1222, 1377, 1798
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	35, 334
BstKTI	GATC	4 cut(s)	100, 541, 559, 1685
BstMAI	GTCTC	1 cut(s)	1471
BstMBI	GATC	4 cut(s)	97, 538, 556, 1682
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 140, 963, 1589
BstNI	CCWGG	4 cut(s)	8, 595, 1431, 1530
BstNSI	RCATGY	2 cut(s)	892, 1298
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	6 cut(s)	6, 146, 147, 593, 1429, 1528
BstSFI	CTRYAG	3 cut(s)	724, 1235, 1503
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	5 cut(s)	385, 585, 1138, 1463, 1517
BstX2I	RGATCY	1 cut(s)	1682
BstXI	CCANNNNNNTGG	1 cut(s)	1646
BstYI	RGATCY	1 cut(s)	1682
BsuRI	GGCC	5 cut(s)	115, 128, 143, 708, 1140
BtgI	CCRYGG	3 cut(s)	174, 1196, 1211
BtgZI	GCGATG	1 cut(s)	410
BtsCI	GGATG	6 cut(s)	349, 424, 850, 1222, 1377, 1798
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	321, 334
BveI	ACCTGC	2 cut(s)	1128, 1232
Cac8I	GCNNGC	5 cut(s)	84, 141, 955, 959, 1776
CaiI	CAGNNNCTG	1 cut(s)	1559
CfoI	GCGC	2 cut(s)	35, 334
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	10, 113, 126, 141, 707, 785
Cfr9I	CCCGGG	1 cut(s)	147
Csp6I	GTAC	5 cut(s)	827, 851, 1375, 1564, 1712
CviQI	GTAC	5 cut(s)	827, 851, 1375, 1564, 1712
DdeI	CTNAG	6 cut(s)	438, 857, 1552, 1560, 1614, 1674
DpnI	GATC	4 cut(s)	99, 540, 558, 1684
DpnII	GATC	4 cut(s)	97, 538, 556, 1682
DraI	TTTAAA	2 cut(s)	780, 943
EaeI	YGGCCR	1 cut(s)	1138
Eam1104I	CTCTTC	4 cut(s)	378, 858, 1338, 1752
EarI	CTCTTC	4 cut(s)	378, 858, 1338, 1752
Ecl136II	GAGCTC	2 cut(s)	953, 1549
Eco130I	CCWWGG	3 cut(s)	1196, 1211, 1283
Eco24I	GRGCYC	2 cut(s)	955, 1551
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	10, 785
Eco53kI	GAGCTC	2 cut(s)	953, 1549
Eco57I	CTGAAG	4 cut(s)	395, 727, 843, 1808
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	2 cut(s)	953, 1549
EcoRII	CCWGG	4 cut(s)	6, 593, 1429, 1528
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	3 cut(s)	1196, 1211, 1283
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	955, 1551
ErhI	CCWWGG	3 cut(s)	1196, 1211, 1283
FaqI	GGGAC	4 cut(s)	78, 1225, 1384, 1392
FauI	CCCGC	2 cut(s)	132, 1817
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	7 cut(s)	74, 180, 399, 574, 1152, 1452, 1506
FokI	GGATG	6 cut(s)	356, 431, 857, 1229, 1364, 1805
FriOI	GRGCYC	2 cut(s)	955, 1551
Fsp4HI	GCNGC	7 cut(s)	74, 180, 399, 574, 1152, 1452, 1506
FspAI	RTGCGCAY	1 cut(s)	333
FspBI	CTAG	3 cut(s)	701, 962, 1680
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	2 cut(s)	34, 333
GluI	GCNGC	7 cut(s)	74, 180, 399, 574, 1152, 1452, 1506
GsaI	CCCAGC	1 cut(s)	1246
GsuI	CTGGAG	1 cut(s)	1551
HaeIII	GGCC	5 cut(s)	115, 128, 143, 708, 1140
HapII	CCGG	7 cut(s)	20, 44, 83, 116, 129, 148, 190
HhaI	GCGC	2 cut(s)	35, 334
Hin6I	GCGC	2 cut(s)	33, 332
HinP1I	GCGC	2 cut(s)	33, 332
HinfI	GANTC	9 cut(s)	119, 166, 184, 610, 970, 1207, 1517, 1676, 1749
HpaII	CCGG	7 cut(s)	20, 44, 83, 116, 129, 148, 190
HphI	GGTGA	5 cut(s)	179, 1103, 1149, 1179, 1806
Hpy166II	GTNNAC	3 cut(s)	174, 886, 1736
Hpy188III	TCNNGA	7 cut(s)	95, 293, 527, 701, 1514, 1680, 1746
Hpy8I	GTNNAC	3 cut(s)	174, 886, 1736
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	8 cut(s)	189, 193, 370, 409, 499, 1428, 1434, 1783
HpyCH4III	ACNGT	9 cut(s)	159, 316, 718, 881, 1063, 1106, 1239, 1733, 1740
HpyCH4IV	ACGT	2 cut(s)	240, 1373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 140, 963, 1589
HpyF3I	CTNAG	6 cut(s)	438, 857, 1552, 1560, 1614, 1674
HpySE526I	ACGT	2 cut(s)	240, 1373
HspAI	GCGC	2 cut(s)	33, 332
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	97, 538, 556, 1682
LmnI	GCTCC	6 cut(s)	22, 131, 950, 1084, 1471, 1630
Lsp1109I	GCAGC	5 cut(s)	385, 585, 1138, 1463, 1517
LweI	GCATC	3 cut(s)	424, 1163, 1207
MaeI	CTAG	3 cut(s)	701, 962, 1680
MaeII	ACGT	2 cut(s)	240, 1373
MaeIII	GTNAC	4 cut(s)	236, 352, 978, 1185
MalI	GATC	4 cut(s)	99, 540, 558, 1684
MbiI	CCGCTC	2 cut(s)	139, 1812
MboI	GATC	4 cut(s)	97, 538, 556, 1682
MboII	GAAGA	9 cut(s)	281, 395, 687, 875, 1106, 1355, 1360, 1718, 1769
MfeI	CAATTG	2 cut(s)	108, 1521
MflI	RGATCY	1 cut(s)	1682
MhlI	GDGCHC	3 cut(s)	628, 955, 1551
MlsI	TGGCCA	1 cut(s)	1140
MluCI	AATT	9 cut(s)	47, 108, 639, 749, 1255, 1399, 1489, 1521, 1623
MluNI	TGGCCA	1 cut(s)	1140
MlyI	GAGTC	6 cut(s)	128, 178, 619, 1526, 1685, 1758
MmeI	TCCRAC	1 cut(s)	1062
Mox20I	TGGCCA	1 cut(s)	1140
Mph1103I	ATGCAT	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	1140
MseI	TTAA	8 cut(s)	278, 444, 638, 713, 779, 942, 1008, 1254
MslI	CAYNNNNRTG	3 cut(s)	363, 1308, 1644
Msp20I	TGGCCA	1 cut(s)	1140
MspA1I	CMGCKG	1 cut(s)	1454
MspI	CCGG	7 cut(s)	20, 44, 83, 116, 129, 148, 190
MspR9I	CCNGG	6 cut(s)	8, 148, 149, 595, 1431, 1530
MunI	CAATTG	2 cut(s)	108, 1521
Mva1269I	GAATGC	2 cut(s)	1541, 1778
MvaI	CCWGG	4 cut(s)	8, 595, 1431, 1530
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	79, 140, 963, 1589
NaeI	GCCGGC	1 cut(s)	84
NciI	CCSGG	2 cut(s)	148, 149
NcoI	CCATGG	2 cut(s)	1196, 1211
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	4 cut(s)	97, 538, 556, 1682
NgoMIV	GCCGGC	1 cut(s)	82
NlaIV	GGNNCC	3 cut(s)	24, 133, 1632
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	1185
NsbI	TGCGCA	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	2 cut(s)	892, 1298
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	1541, 1778
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	166, 970, 1207
PflMI	CCANNNNNTGG	1 cut(s)	836
PkrI	GCNGC	7 cut(s)	75, 181, 400, 575, 1153, 1453, 1507
PleI	GAGTC	6 cut(s)	127, 178, 618, 1525, 1684, 1757
PpsI	GAGTC	6 cut(s)	127, 178, 618, 1525, 1684, 1757
PscI	ACATGT	1 cut(s)	888
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	1254
Psp124BI	GAGCTC	2 cut(s)	955, 1551
Psp6I	CCWGG	4 cut(s)	6, 593, 1429, 1528
PspFI	CCCAGC	1 cut(s)	1242
PspGI	CCWGG	4 cut(s)	6, 593, 1429, 1528
PspN4I	GGNNCC	3 cut(s)	24, 133, 1632
PspPI	GGNCC	6 cut(s)	10, 113, 126, 141, 707, 785
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
PstI	CTGCAG	1 cut(s)	1507
PstNI	CAGNNNCTG	1 cut(s)	1559
PsuI	RGATCY	1 cut(s)	1682
PvuII	CAGCTG	1 cut(s)	1454
RsaI	GTAC	5 cut(s)	828, 852, 1376, 1565, 1713
RsaNI	GTAC	5 cut(s)	827, 851, 1375, 1564, 1712
RseI	CAYNNNNRTG	3 cut(s)	363, 1308, 1644
SacI	GAGCTC	2 cut(s)	955, 1551
SaqAI	TTAA	8 cut(s)	278, 444, 638, 713, 779, 942, 1008, 1254
SatI	GCNGC	7 cut(s)	74, 180, 399, 574, 1152, 1452, 1506
Sau3AI	GATC	4 cut(s)	97, 538, 556, 1682
Sau96I	GGNCC	6 cut(s)	10, 113, 126, 141, 707, 785
SchI	GAGTC	6 cut(s)	128, 178, 619, 1526, 1685, 1758
ScrFI	CCNGG	6 cut(s)	8, 148, 149, 595, 1431, 1530
SduI	GDGCHC	3 cut(s)	628, 955, 1551
SfaNI	GCATC	3 cut(s)	424, 1163, 1207
SfcI	CTRYAG	3 cut(s)	724, 1235, 1503
SinI	GGWCC	2 cut(s)	10, 785
SmaI	CCCGGG	1 cut(s)	149
SmiMI	CAYNNNNRTG	3 cut(s)	363, 1308, 1644
SmlI	CTYRAG	2 cut(s)	338, 1512
SmoI	CTYRAG	2 cut(s)	338, 1512
Sse9I	AATT	9 cut(s)	47, 108, 639, 749, 1255, 1399, 1489, 1521, 1623
SsiI	CCGC	5 cut(s)	31, 74, 139, 179, 1810
SspI	AATATT	2 cut(s)	767, 1252
SspMI	CTAG	3 cut(s)	701, 962, 1680
SstI	GAGCTC	2 cut(s)	955, 1551
StyD4I	CCNGG	6 cut(s)	6, 146, 147, 593, 1429, 1528
StyI	CCWWGG	3 cut(s)	1196, 1211, 1283
TaaI	ACNGT	9 cut(s)	159, 316, 718, 881, 1063, 1106, 1239, 1733, 1740
TaiI	ACGT	2 cut(s)	243, 1376
TaqI	TCGA	3 cut(s)	925, 1752, 1821
TasI	AATT	9 cut(s)	47, 108, 639, 749, 1255, 1399, 1489, 1521, 1623
TatI	WGTACW	1 cut(s)	850
TauI	GCSGC	2 cut(s)	76, 182
TfiI	GAWTC	3 cut(s)	166, 970, 1207
Tru1I	TTAA	8 cut(s)	278, 444, 638, 713, 779, 942, 1008, 1254
Tru9I	TTAA	8 cut(s)	278, 444, 638, 713, 779, 942, 1008, 1254
TscAI	CASTG	2 cut(s)	328, 334
TseFI	GTSAC	1 cut(s)	1185
TseI	GCWGC	5 cut(s)	398, 573, 1151, 1451, 1505
Tsp45I	GTSAC	1 cut(s)	1185
TspDTI	ATGAA	8 cut(s)	353, 408, 680, 1017, 1056, 1656, 1770, 1809
TspGWI	ACGGA	1 cut(s)	90
TspMI	CCCGGG	1 cut(s)	147
TspRI	CASTG	2 cut(s)	328, 334
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	10, 785
VspI	ATTAAT	1 cut(s)	1254
XapI	RAATTY	2 cut(s)	47, 749
XbaI	TCTAGA	2 cut(s)	700, 1679
XceI	RCATGY	2 cut(s)	892, 1298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1723
XmaI	CCCGGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	3 cut(s)	701, 962, 1680
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.