Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001135

Physical Location & Seq

Genomic Coordinates Forward (+)

4678997 .. 4683271

Gene Structure 4275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1054900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCCCGTCTCCTCTGTTCGGCGCTGCCGAACAACGTCGTCTTCCGCGAGGATCGACCCTGCCCTTCGCCGCCCTCGCCGTCATTGCCGACCACCAACCCCGATCCCTCCGTCATAGCCACCGAATCTTGGGCCGGAGCCGAGGAGGCAACCCAGGAGATAGTCTCAAAGATTCAGCCCACTCTGGCGGCCCACCAGACGAGGAAGGAGGTCATTCAATATGTGCAGAACCTCATCACATGTAACGTCGGGTGTCAGGTTTTTCCTTATGGGTCAGTTCCTTTGAAAACGTATCTGCCTGATGGCGATATTGATATGACGGTATTTGGCAGTGCAAACATTGATGAAGTCTTTGCAACTGATGTGTATGCAATTATGAAAGGCGAGGAGAATAACGAAGCTAGTCCATTTCATGTGAAGGATGTACATTACATTGATGCCGAGGTTAAGCTTGTGAAGTGCATTATACAAAATATAGTTGTAGATATATCCTCCAATCAGTTAGGAGGATTTAGTACACTGCACTTTCTTGAACAGGTTGATAATTATATTGGCAAAAATCATCTGTTCAAGCGGAGTATTATTCTGGCAAAAGCCTGGTGCTACTATGAGAGTCGTATTCTTGGGGCCCATCATGGTTTGATTTCAACATATGCTTTGGAAACATTAATCCTATATGTTTTCCATTTTTTTCATTCGTCACTGGATGGCCCTCTGGCAGTCCTTTATAGATTTTTGGATTACTTCAGCAAATTTGACTGGGAGAACTACTGTATAAGTTTAAATGGACCAGTATGCAAATCGTCCCTGCCTGATATAGTGGTTGAGGCACCAGAAAATGGGAGAGATGATCTACTGCTGAGTGAAGAGTTTATTAGAAATTGTGTGGAAATGTTCTCTGTTCCATCAAAGGGGCATGAGACAAACTTGCGAGCTTTTCCCCTGAAGCATCTTAATATAATAGATCCGCTAAAACAGAACAACAACCTTGGGCGTAGTGTCAGCAGAAGTAACTTCTATCGAATATGCAGTGCTTTTAAATATGGAGCTCGCAAGCTCAGTTGGATTCTTTCGTTACCAGGGGAATGCATAGCAGATGAGCTGCCCAAGTTTTTTGCAAACACTTTGGATAGGCGTGGAAGCAATGGTCAGACAAATGTGCACAATAATGCGTTGTCTGGGGGTTCTGAAGCTTTGAACATTTTGTTGGAGCTTGGTGGAGATTTTGACAGTCATGGAATGAACCTGCAATATGGTCCCTTTTTCCCTGGATCTGCTACATCACCTCCTTTGTTGCCCAGTCCTCCCTTGTCACCTCAGCCATGGAAAGAGAACCCATGGGGAGGTACGTCTGAAGCCCTTCAGTTCCATCAGCATATTAATTCTCAAACTAACATAAATGGTGTTGATTGGGGAGTACATGCGTACCAAGCAAATGATTCCATTATCTCCGTTGCTGCTTTCAGAGGAGAAAAAAGGAAACCCCGAGGGACTGGAACCTACATCCCCAATGCGTCTTTTCAGTGTTACCGTCCCTTTAAGGATAGGTTGCCTGGGAGGGGAAGGAAACAGGCACCAGGAACTTGTTTTCGATTTCAGAGACACGCCTTTGGTTATGGCTTCACTGTAGCTCCTCAAGAGTCAATCTCCCCTAAAGAATGCAGCCGAGAGCTCTCAGAAGTGGAGTACCCAATTCTAGGTCATGGAAACTCTGCGACATTAGATTACCATCAACCTCACATGCCTCTTTGGAAATCATTTCATGGCAACAGTTTCTCCAACTTGCCAGCGAAACTCGAATCTAGATCCTCATCCCCTCAGTTATGGGAGGAGGCACCCATGCCGGAATTGGACCATCAAGCAGAGTTTTTTGGAGCCGATGAGGAAAGGATTGAAGAACAATCAAACCTTTTGAAAAATGAAGATCAGGCATTCCACCTGAAAAATGAAGATGATTTTCCGCCGCTCAACTCTCGAGTGCCGTTGAAGGAAGGATTATGCGTTGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_assoc

Protein Analysis

671

Amino Acids

74.93

Weight (kDa)

5.71

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	50 - 178	1.3e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	184 - 376	9.1e-100	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT2G40520 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320 AT3G56320
fragaria_vesca	FvH4_3g40330 FvH4_3g40330 FvH4_3g40330 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750 FvH4_7g25750
malus_domestica	MD01G1165200.v1.1 MD03G1053200.v1.1 MD07G1232500.v1.1 MD11G1054900.v1.1
prunus_persica	Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.2G262700_v2.0.a1 Prupe.6G042500_v2.0.a1 Prupe.6G042500_v2.0.a1
pyrus_communis	pycom01g17910 pycom03g04230 pycom11g04480
rosa_chinensis	RchiOBHm_Chr1g0372011 RchiOBHm_Chr5g0072681
rosa_laevigata	RLG00000026928 RLG00000036325
rosa_multiflora	Rmu_sc0001755.1_g000036 Rmu_sc0003160.1_g000034
rosa_roxburghii	Rroxscaffold_1G00008460
rosa_rugosa	Rorug01G0367900 Rorug01G0368000 Rorug01G0368100 Rorug01G0368200 Rorug01G0368300 Rorug05G0419200 Rorug05G0419300
rosa_samantha	Rh1AG377600 Rh1BG341000 Rh1CG354200 Rh1DG372000 Rh5AG476200 Rh5BG496400 Rh5CG520200 Rh5DG508800
rosa_wichuraiana	Rw1G033220 Rw5G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1254
AccB1I	GGYRCC	3 cut(s)	829, 1573, 1834
AccB7I	CCANNNNNTGG	1 cut(s)	839
AccBSI	CCGCTC	1 cut(s)	1966
AccII	CGCG	1 cut(s)	48
AciI	CCGC	7 cut(s)	46, 71, 188, 574, 968, 1961, 1964
AclWI	GGATC	5 cut(s)	60, 98, 959, 1279, 1800
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	5 cut(s)	730, 965, 1209, 1346, 1374
AfaI	GTAC	6 cut(s)	426, 517, 1348, 1419, 1427, 1688
AfiI	CCNNNNNNNGG	7 cut(s)	19, 129, 839, 911, 1343, 1559, 1697
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	9 cut(s)	218, 286, 533, 571, 648, 1198, 1895, 1915, 1987
AjnI	CCWGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
AjuI	GAANNNNNNNTTGG	2 cut(s)	1190, 1222
Alw21I	GWGCWC	3 cut(s)	1051, 1164, 1674
Alw26I	GTCTC	4 cut(s)	14, 169, 914, 1594
Alw44I	GTGCAC	1 cut(s)	1160
AlwI	GGATC	5 cut(s)	60, 98, 959, 1279, 1800
Ama87I	CYCGRG	2 cut(s)	1485, 1974
AoxI	GGCC	5 cut(s)	3, 132, 189, 627, 709
ApaI	GGGCCC	1 cut(s)	631
ApaLI	GTGCAC	1 cut(s)	1160
ApeKI	GCWGC	4 cut(s)	25, 1102, 1457, 1662
ApoI	RAATTY	1 cut(s)	752
AseI	ATTAAT	2 cut(s)	668, 1380
Asp700I	GAANNNNTTC	1 cut(s)	1359
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	9 cut(s)	4, 132, 190, 627, 628, 710, 788, 1256, 1852
AsuHPI	GGTGA	2 cut(s)	1275, 1305
AvaI	CYCGRG	2 cut(s)	1485, 1974
AvaII	GGWCC	3 cut(s)	788, 1256, 1852
BaeGI	GKGCMC	2 cut(s)	631, 1164
BaeI	ACNNNNGTAYC	2 cut(s)	1409, 1442
BanI	GGYRCC	3 cut(s)	829, 1573, 1834
BanII	GRGCYC	3 cut(s)	631, 1051, 1674
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	3 cut(s)	1051, 1164, 1674
BbvCI	CCTCAGC	1 cut(s)	1317
BbvI	GCAGC	4 cut(s)	12, 1089, 1444, 1674
BccI	CCATC	7 cut(s)	296, 639, 701, 913, 1377, 1737, 1863
BceAI	ACGGC	2 cut(s)	64, 1966
BciT130I	CCWGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
BcoDI	GTCTC	4 cut(s)	14, 169, 914, 1594
BfaI	CTAG	3 cut(s)	402, 1697, 1803
BfmI	CTRYAG	1 cut(s)	1626
BfoI	RGCGCY	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	1254
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	7 cut(s)	26, 71, 189, 1103, 1458, 1663, 1964
BlsI	GCNGC	7 cut(s)	27, 72, 190, 1104, 1459, 1664, 1965
Bme1390I	CCNGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
Bme18I	GGWCC	3 cut(s)	788, 1256, 1852
BmeT110I	CYCGRG	2 cut(s)	1485, 1974
BmgT120I	GGNCC	9 cut(s)	4, 132, 190, 627, 628, 710, 788, 1256, 1852
BmiI	GGNNCC	9 cut(s)	139, 628, 629, 831, 1258, 1498, 1575, 1836, 1876
BmrFI	CCNGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
BmrI	ACTGGG	2 cut(s)	769, 1293
BmsI	GCATC	2 cut(s)	427, 958
BmuI	ACTGGG	2 cut(s)	769, 1293
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	4 cut(s)	149, 181, 1631, 1663
Bpu10I	CCTNAGC	1 cut(s)	1317
BpuEI	CTTGAG	1 cut(s)	1620
BsaBI	GATNNNNATC	2 cut(s)	1728, 1810
BsaXI	ACNNNNNCTCC	6 cut(s)	1270, 1300, 1615, 1645, 1760, 1790
Bsc4I	CCNNNNNNNGG	7 cut(s)	19, 129, 839, 911, 1343, 1559, 1697
Bse1I	ACTGG	5 cut(s)	708, 764, 791, 1299, 1498
Bse3DI	GCAATG	2 cut(s)	83, 1150
Bse8I	GATNNNNATC	2 cut(s)	1728, 1810
BseBI	CCWGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
BseGI	GGATG	4 cut(s)	427, 712, 1503, 1811
BseJI	GATNNNNATC	2 cut(s)	1728, 1810
BseLI	CCNNNNNNNGG	7 cut(s)	19, 129, 839, 911, 1343, 1559, 1697
BseMI	GCAATG	2 cut(s)	83, 1150
BseMII	CTCAG	5 cut(s)	851, 1072, 1331, 1689, 1832
BseNI	ACTGG	5 cut(s)	708, 764, 791, 1299, 1498
BseRI	GAGGAG	5 cut(s)	158, 401, 1482, 1623, 1844
BseSI	GKGCMC	2 cut(s)	631, 1164
BseXI	GCAGC	4 cut(s)	12, 1089, 1444, 1674
BsgI	GTGCAG	2 cut(s)	245, 506
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	5 cut(s)	5, 134, 191, 629, 711
BshNI	GGYRCC	3 cut(s)	829, 1573, 1834
BsiHKAI	GWGCWC	3 cut(s)	1051, 1164, 1674
BsiHKCI	CYCGRG	2 cut(s)	1485, 1974
BsiSI	CCGG	2 cut(s)	135, 1844
BslFI	GGGAC	4 cut(s)	790, 1242, 1504, 1518
BslI	CCNNNNNNNGG	7 cut(s)	19, 129, 839, 911, 1343, 1559, 1697
BsmAI	GTCTC	4 cut(s)	14, 169, 914, 1594
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	4 cut(s)	790, 1242, 1504, 1518
BsmI	GAATGC	3 cut(s)	1091, 1664, 1931
BsnI	GGCC	5 cut(s)	5, 134, 191, 629, 711
BsoBI	CYCGRG	2 cut(s)	1485, 1974
Bsp120I	GGGCCC	1 cut(s)	627
Bsp1286I	GDGCHC	4 cut(s)	631, 1051, 1164, 1674
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
Bsp19I	CCATGG	2 cut(s)	1322, 1337
BspACI	CCGC	7 cut(s)	46, 71, 188, 574, 968, 1961, 1964
BspANI	GGCC	5 cut(s)	5, 134, 191, 629, 711
BspCNI	CTCAG	5 cut(s)	852, 1071, 1330, 1688, 1831
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	9 cut(s)	139, 628, 629, 831, 1258, 1498, 1575, 1836, 1876
BspMI	ACCTGC	1 cut(s)	1254
BspPI	GGATC	5 cut(s)	60, 98, 959, 1279, 1800
BspT107I	GGYRCC	3 cut(s)	829, 1573, 1834
BsrBI	CCGCTC	1 cut(s)	1966
BsrDI	GCAATG	2 cut(s)	83, 1150
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	5 cut(s)	708, 764, 791, 1299, 1498
BssMI	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
BssT1I	CCWWGG	3 cut(s)	988, 1322, 1337
Bst2UI	CCWGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
Bst4CI	ACNGT	6 cut(s)	322, 773, 1232, 1532, 1627, 1772
Bst6I	CTCTTC	1 cut(s)	861
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	4 cut(s)	933, 1051, 1055, 1788
BstDEI	CTNAG	5 cut(s)	860, 1058, 1317, 1675, 1818
BstDSI	CCRYGG	2 cut(s)	1322, 1337
BstF5I	GGATG	4 cut(s)	427, 712, 1503, 1811
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	7 cut(s)	55, 106, 853, 967, 1274, 1808, 1927
BstMAI	GTCTC	4 cut(s)	14, 169, 914, 1594
BstMBI	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 85, 146, 1430
BstNI	CCWGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
BstNSI	RCATGY	3 cut(s)	243, 1424, 1744
BstSCI	CCNGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
BstSFI	CTRYAG	1 cut(s)	1626
BstSLI	GKGCMC	2 cut(s)	631, 1164
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	12, 1089, 1444, 1674
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	3 cut(s)	964, 1271, 1805
BstYI	RGATCY	3 cut(s)	964, 1271, 1805
BsuRI	GGCC	5 cut(s)	5, 134, 191, 629, 711
BtgI	CCRYGG	2 cut(s)	1322, 1337
BtsCI	GGATG	4 cut(s)	427, 712, 1503, 1811
BtsI	GCAGTG	3 cut(s)	337, 518, 1036
BtsIMutI	CAGTG	6 cut(s)	337, 518, 701, 1036, 1529, 1623
BveI	ACCTGC	1 cut(s)	1254
Cac8I	GCNNGC	4 cut(s)	933, 1051, 1055, 1788
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	9 cut(s)	4, 132, 190, 627, 628, 710, 788, 1256, 1852
CseI	GACGC	1 cut(s)	1503
Csp6I	GTAC	6 cut(s)	425, 516, 1347, 1418, 1426, 1687
CviQI	GTAC	6 cut(s)	425, 516, 1347, 1418, 1426, 1687
DdeI	CTNAG	5 cut(s)	860, 1058, 1317, 1675, 1818
DpnI	GATC	7 cut(s)	54, 105, 852, 966, 1273, 1807, 1926
DpnII	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
DraI	TTTAAA	2 cut(s)	783, 1039
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
EciI	GGCGGA	1 cut(s)	1950
Ecl136II	GAGCTC	2 cut(s)	1049, 1672
Eco130I	CCWWGG	3 cut(s)	988, 1322, 1337
Eco24I	GRGCYC	3 cut(s)	631, 1051, 1674
Eco47I	GGWCC	3 cut(s)	788, 1256, 1852
Eco53kI	GAGCTC	2 cut(s)	1049, 1672
Eco57I	CTGAAG	5 cut(s)	730, 965, 1209, 1346, 1374
Eco88I	CYCGRG	2 cut(s)	1485, 1974
EcoICRI	GAGCTC	2 cut(s)	1049, 1672
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
EcoT14I	CCWWGG	3 cut(s)	988, 1322, 1337
EcoT22I	ATGCAT	1 cut(s)	1091
EcoT38I	GRGCYC	3 cut(s)	631, 1051, 1674
ErhI	CCWWGG	3 cut(s)	988, 1322, 1337
Esp3I	CGTCTC	1 cut(s)	14
FaqI	GGGAC	4 cut(s)	790, 1242, 1504, 1518
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	7 cut(s)	26, 71, 189, 1103, 1458, 1663, 1964
FokI	GGATG	4 cut(s)	434, 719, 1490, 1798
FriOI	GRGCYC	3 cut(s)	631, 1051, 1674
Fsp4HI	GCNGC	7 cut(s)	26, 71, 189, 1103, 1458, 1663, 1964
FspBI	CTAG	3 cut(s)	402, 1697, 1803
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	7 cut(s)	26, 71, 189, 1103, 1458, 1663, 1964
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	5 cut(s)	5, 134, 191, 629, 711
HapII	CCGG	2 cut(s)	135, 1844
HgaI	GACGC	1 cut(s)	1503
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	449, 1191
HinfI	GANTC	7 cut(s)	125, 172, 613, 1066, 1439, 1640, 1799
HpaII	CCGG	2 cut(s)	135, 1844
HphI	GGTGA	2 cut(s)	1275, 1305
Hpy166II	GTNNAC	2 cut(s)	518, 1162
Hpy188I	TCNGA	6 cut(s)	1152, 1189, 1354, 1466, 1599, 1678
Hpy188III	TCNNGA	4 cut(s)	530, 1637, 1803, 1974
Hpy8I	GTNNAC	2 cut(s)	518, 1162
Hpy99I	CGWCG	2 cut(s)	41, 251
HpyAV	CCTTC	7 cut(s)	75, 199, 412, 1370, 1557, 1981, 1985
HpyCH4III	ACNGT	6 cut(s)	322, 773, 1232, 1532, 1627, 1772
HpyCH4IV	ACGT	4 cut(s)	36, 246, 290, 1349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 85, 146, 1430
HpyF3I	CTNAG	5 cut(s)	860, 1058, 1317, 1675, 1818
HpySE526I	ACGT	4 cut(s)	36, 246, 290, 1349
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
LmnI	GCTCC	5 cut(s)	137, 1046, 1210, 1636, 1874
Lsp1109I	GCAGC	4 cut(s)	12, 1089, 1444, 1674
LweI	GCATC	2 cut(s)	427, 958
MaeI	CTAG	3 cut(s)	402, 1697, 1803
MaeII	ACGT	4 cut(s)	36, 246, 290, 1349
MaeIII	GTNAC	6 cut(s)	242, 699, 1010, 1074, 1311, 1526
MalI	GATC	7 cut(s)	54, 105, 852, 966, 1273, 1807, 1926
MbiI	CCGCTC	1 cut(s)	1966
MboI	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
MboII	GAAGA	5 cut(s)	34, 878, 1907, 1934, 1961
MflI	RGATCY	3 cut(s)	964, 1271, 1805
MhlI	GDGCHC	4 cut(s)	631, 1051, 1164, 1674
MluCI	AATT	7 cut(s)	372, 544, 752, 880, 1381, 1692, 1847
MlyI	GAGTC	2 cut(s)	622, 1649
MmeI	TCCRAC	4 cut(s)	1043, 1188, 1803, 1984
Mph1103I	ATGCAT	1 cut(s)	1091
MroXI	GAANNNNTTC	1 cut(s)	1359
MseI	TTAA	7 cut(s)	447, 668, 782, 954, 1038, 1380, 1539
MslI	CAYNNNNRTG	1 cut(s)	1167
MspI	CCGG	2 cut(s)	135, 1844
MspR9I	CCNGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
Mva1269I	GAATGC	3 cut(s)	1091, 1664, 1931
MvaI	CCWGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	76, 85, 146, 1430
NcoI	CCATGG	2 cut(s)	1322, 1337
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
NlaIV	GGNNCC	9 cut(s)	139, 628, 629, 831, 1258, 1498, 1575, 1836, 1876
NmeAIII	GCCGAG	3 cut(s)	166, 466, 1691
NmuCI	GTSAC	2 cut(s)	699, 1311
NsiI	ATGCAT	1 cut(s)	1091
NspI	RCATGY	3 cut(s)	243, 1424, 1744
PaeR7I	CTCGAG	1 cut(s)	1974
PciI	ACATGT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 45
PctI	GAATGC	3 cut(s)	1091, 1664, 1931
PdmI	GAANNNNTTC	1 cut(s)	1359
PfeI	GAWTC	5 cut(s)	125, 172, 1066, 1439, 1799
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	7 cut(s)	27, 72, 190, 1104, 1459, 1664, 1965
PleI	GAGTC	2 cut(s)	621, 1648
PpsI	GAGTC	2 cut(s)	621, 1648
PscI	ACATGT	1 cut(s)	239
PshBI	ATTAAT	2 cut(s)	668, 1380
Psp124BI	GAGCTC	2 cut(s)	1051, 1674
Psp6I	CCWGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
PspGI	CCWGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
PspN4I	GGNNCC	9 cut(s)	139, 628, 629, 831, 1258, 1498, 1575, 1836, 1876
PspOMI	GGGCCC	1 cut(s)	627
PspPI	GGNCC	9 cut(s)	4, 132, 190, 627, 628, 710, 788, 1256, 1852
PsuI	RGATCY	3 cut(s)	964, 1271, 1805
RsaI	GTAC	6 cut(s)	426, 517, 1348, 1419, 1427, 1688
RsaNI	GTAC	6 cut(s)	425, 516, 1347, 1418, 1426, 1687
RseI	CAYNNNNRTG	1 cut(s)	1167
SacI	GAGCTC	2 cut(s)	1051, 1674
SaqAI	TTAA	7 cut(s)	447, 668, 782, 954, 1038, 1380, 1539
SatI	GCNGC	7 cut(s)	26, 71, 189, 1103, 1458, 1663, 1964
Sau3AI	GATC	7 cut(s)	52, 103, 850, 964, 1271, 1805, 1924
Sau96I	GGNCC	9 cut(s)	4, 132, 190, 627, 628, 710, 788, 1256, 1852
SchI	GAGTC	2 cut(s)	622, 1649
ScrFI	CCNGG	6 cut(s)	155, 598, 1080, 1269, 1554, 1578
SduI	GDGCHC	4 cut(s)	631, 1051, 1164, 1674
SfaNI	GCATC	2 cut(s)	427, 958
SfcI	CTRYAG	1 cut(s)	1626
Sfr274I	CTCGAG	1 cut(s)	1974
SinI	GGWCC	3 cut(s)	788, 1256, 1852
SlaI	CTCGAG	1 cut(s)	1974
SmiMI	CAYNNNNRTG	1 cut(s)	1167
SmlI	CTYRAG	2 cut(s)	1635, 1974
SmoI	CTYRAG	2 cut(s)	1635, 1974
Sse9I	AATT	7 cut(s)	372, 544, 752, 880, 1381, 1692, 1847
SsiI	CCGC	7 cut(s)	46, 71, 188, 574, 968, 1961, 1964
SspMI	CTAG	3 cut(s)	402, 1697, 1803
SstI	GAGCTC	2 cut(s)	1051, 1674
StyD4I	CCNGG	6 cut(s)	153, 596, 1078, 1267, 1552, 1576
StyI	CCWWGG	3 cut(s)	988, 1322, 1337
TaaI	ACNGT	6 cut(s)	322, 773, 1232, 1532, 1627, 1772
TaiI	ACGT	4 cut(s)	39, 249, 293, 1352
TaqI	TCGA	5 cut(s)	55, 1021, 1591, 1797, 1975
TasI	AATT	7 cut(s)	372, 544, 752, 880, 1381, 1692, 1847
TatI	WGTACW	3 cut(s)	424, 515, 1417
TauI	GCSGC	3 cut(s)	73, 191, 1966
TfiI	GAWTC	5 cut(s)	125, 172, 1066, 1439, 1799
Tru1I	TTAA	7 cut(s)	447, 668, 782, 954, 1038, 1380, 1539
Tru9I	TTAA	7 cut(s)	447, 668, 782, 954, 1038, 1380, 1539
TscAI	CASTG	6 cut(s)	337, 525, 708, 1036, 1529, 1630
TseFI	GTSAC	2 cut(s)	699, 1311
TseI	GCWGC	4 cut(s)	25, 1102, 1457, 1662
Tsp45I	GTSAC	2 cut(s)	699, 1311
TspDTI	ATGAA	8 cut(s)	360, 392, 401, 683, 1256, 1751, 1935, 1962
TspGWI	ACGGA	2 cut(s)	100, 1441
TspRI	CASTG	6 cut(s)	337, 525, 708, 1036, 1529, 1630
Van91I	CCANNNNNTGG	1 cut(s)	839
VneI	GTGCAC	1 cut(s)	1160
VpaK11BI	GGWCC	3 cut(s)	788, 1256, 1852
VspI	ATTAAT	2 cut(s)	668, 1380
XapI	RAATTY	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	1802
XceI	RCATGY	3 cut(s)	243, 1424, 1744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1846
XhoI	CTCGAG	1 cut(s)	1974
XmnI	GAANNNNTTC	1 cut(s)	1359
XspI	CTAG	3 cut(s)	402, 1697, 1803
Zsp2I	ATGCAT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.