Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

17880457 .. 17882636

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTGGCGAAGGTAACTTAGGTAAGGATCATGAAGAAGAAAACGAAGCACCACTTCCTGGGTTCAGGTTTCATCCGACGGATGAAGAGCTTTTAGGATACTATCTTCGAAGAAAAGTAGAGAACAAAACCATCAAACTCGAACTTATCAAACAGATCGATATCTATAAGTACGATCCTTGGGATCTTCCAAGAGTGAGCAGCGTCGGAGAAAAGGAGTGGTACTTCTTCTGCATGAGAGGTAGGAAATACAGGAATAGCGTTCGACCAAACCGAGTGACCGGTTCAGGTTTCTGGAAAGCCACTGGTATTGATAAACCGGTTTACTCCAATCTTGACTGTGTTGGTCTCAAGAAATCTCTGGTTTACTATCTTGGTTCAGCCGGTAAAGGCACCAAAACCGATTGGATGATGCATGAATTCCGCCTCCCCTCCACCACGAAAACCGACTCTCCAGCTCAACAAGCAGAGGTATGGACACTTTGCAGAATCTTCAAACGAGTCACATCTCAAAGAAACCCAACCATCTTACCACCAAACCGAAAACCGGTTATCACTTTAACCGACACTTGTTCTAAGACCAGCAGCTTAGATTCCGACCACACGAGCCACCGTACAGTAGATTCCATGTCCCACGAGCCGCCGCTTCCACAGCCACAGAATCCTTATTGGAACCAACATATAGTTGGTTTTAATCAACCGACATATACTGGTAATGATAATAACCTCCTGATGAGTTTCTGGAACGGCAACGGTGGAGATTTCATAGGAGACTCAGCAAGTTGGGATGAACTTAGATCTGTTATAGATGGCAACACTAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

275

Amino Acids

31.46

Weight (kDa)

8.24

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	20 - 143	9.5e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	3 cut(s)	424, 641, 644
AclWI	GGATC	3 cut(s)	36, 170, 192
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	3 cut(s)	173, 224, 616
AfiI	CCNNNNNNNGG	2 cut(s)	59, 547
AgeI	ACCGGT	3 cut(s)	281, 319, 547
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	91, 458, 588
AluI	AGCT	3 cut(s)	91, 458, 588
Alw26I	GTCTC	2 cut(s)	353, 765
AlwI	GGATC	3 cut(s)	36, 170, 192
ApeKI	GCWGC	2 cut(s)	201, 585
ApoI	RAATTY	1 cut(s)	419
AsiGI	ACCGGT	3 cut(s)	281, 319, 547
AsuII	TTCGAA	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	392
BauI	CACGAG	2 cut(s)	604, 635
BbvI	GCAGC	2 cut(s)	213, 597
BccI	CCATC	3 cut(s)	140, 533, 803
BceAI	ACGGC	1 cut(s)	763
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	353, 765
BfaI	CTAG	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	797
BisI	GCNGC	4 cut(s)	202, 586, 641, 644
BlsI	GCNGC	4 cut(s)	203, 587, 642, 645
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	394, 674
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	59, 179
BsaWI	WCCGGW	3 cut(s)	281, 319, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 547
Bse118I	RCCGGY	4 cut(s)	281, 319, 383, 547
Bse1I	ACTGG	2 cut(s)	310, 715
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	59, 179
BseGI	GGATG	4 cut(s)	73, 88, 414, 793
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	59, 547
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	2 cut(s)	310, 715
BseXI	GCAGC	2 cut(s)	213, 597
BshNI	GGYRCC	1 cut(s)	392
BshTI	ACCGGT	3 cut(s)	281, 319, 547
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	282, 320, 384, 548
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	59, 547
BsmAI	GTCTC	2 cut(s)	353, 765
BsmFI	GGGAC	1 cut(s)	616
Bso31I	GGTCTC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	28, 156, 175, 184, 797
BspACI	CCGC	3 cut(s)	424, 641, 644
BspCNI	CTCAG	1 cut(s)	788
BspDI	ATCGAT	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	394, 674
BspPI	GGATC	3 cut(s)	36, 170, 192
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	4 cut(s)	281, 319, 383, 547
BsrI	ACTGG	2 cut(s)	310, 715
BssAI	RCCGGY	4 cut(s)	281, 319, 383, 547
BssECI	CCNNGG	2 cut(s)	59, 179
BssMI	GATC	5 cut(s)	28, 156, 175, 184, 797
BssSI	CACGAG	2 cut(s)	604, 635
BssT1I	CCWWGG	1 cut(s)	179
Bst2BI	CACGAG	2 cut(s)	604, 635
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	4 cut(s)	341, 614, 619, 755
Bst6I	CTCTTC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	109
BstDEI	CTNAG	5 cut(s)	19, 576, 589, 775, 794
BstF5I	GGATG	4 cut(s)	73, 88, 414, 793
BstKTI	GATC	5 cut(s)	31, 159, 178, 187, 800
BstMAI	GTCTC	2 cut(s)	353, 765
BstMBI	GATC	5 cut(s)	28, 156, 175, 184, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 652
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	213, 597
BstX2I	RGATCY	2 cut(s)	184, 797
BstYI	RGATCY	2 cut(s)	184, 797
Bsu15I	ATCGAT	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	73, 88, 414, 793
BtsIMutI	CAGTG	1 cut(s)	303
CciI	TCATGA	1 cut(s)	31
Cfr10I	RCCGGY	4 cut(s)	281, 319, 383, 547
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	172, 223, 615
CspAI	ACCGGT	3 cut(s)	281, 319, 547
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	32, 235, 416, 628
CviJI	RGCY	8 cut(s)	91, 302, 383, 458, 588, 609, 640, 655
CviKI_1	RGCY	8 cut(s)	91, 302, 383, 458, 588, 609, 640, 655
CviQI	GTAC	3 cut(s)	172, 223, 615
DdeI	CTNAG	5 cut(s)	19, 576, 589, 775, 794
DpnI	GATC	5 cut(s)	30, 158, 177, 186, 799
DpnII	GATC	5 cut(s)	28, 156, 175, 184, 797
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	4 cut(s)	35, 238, 419, 631
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	4 cut(s)	31, 234, 415, 627
Fnu4HI	GCNGC	4 cut(s)	202, 586, 641, 644
FokI	GGATG	4 cut(s)	60, 95, 421, 800
Fsp4HI	GCNGC	4 cut(s)	202, 586, 641, 644
FspBI	CTAG	1 cut(s)	826
GluI	GCNGC	4 cut(s)	202, 586, 641, 644
GsuI	CTGGAG	1 cut(s)	438
HapII	CCGG	4 cut(s)	282, 320, 384, 548
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	4 cut(s)	35, 238, 419, 631
HinfI	GANTC	7 cut(s)	449, 489, 501, 593, 623, 661, 773
HpaII	CCGG	4 cut(s)	282, 320, 384, 548
Hpy166II	GTNNAC	2 cut(s)	325, 367
Hpy188I	TCNGA	3 cut(s)	78, 209, 598
Hpy188III	TCNNGA	6 cut(s)	32, 295, 335, 352, 730, 742
Hpy8I	GTNNAC	2 cut(s)	325, 367
Hpy99I	CGWCG	2 cut(s)	82, 209
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	4 cut(s)	341, 614, 619, 755
HpyCH4V	TGCA	3 cut(s)	234, 415, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 652
HpyF3I	CTNAG	5 cut(s)	19, 576, 589, 775, 794
Hsp92II	CATG	4 cut(s)	35, 238, 419, 631
Kzo9I	GATC	5 cut(s)	28, 156, 175, 184, 797
LguI	GCTCTTC	1 cut(s)	81
Lsp1109I	GCAGC	2 cut(s)	213, 597
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	826
MaeIII	GTNAC	3 cut(s)	14, 277, 502
MalI	GATC	5 cut(s)	30, 158, 177, 186, 799
MboI	GATC	5 cut(s)	28, 156, 175, 184, 797
MboII	GAAGA	8 cut(s)	47, 50, 98, 98, 123, 179, 220, 484
MflI	RGATCY	2 cut(s)	184, 797
MluCI	AATT	1 cut(s)	419
MlyI	GAGTC	3 cut(s)	443, 510, 767
MmeI	TCCRAC	3 cut(s)	101, 187, 621
MnlI	CCTC	5 cut(s)	233, 437, 442, 463, 737
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	2 cut(s)	560, 693
MspI	CCGG	4 cut(s)	282, 320, 384, 548
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	464, 652
NdeII	GATC	5 cut(s)	28, 156, 175, 184, 797
NlaIII	CATG	4 cut(s)	35, 238, 419, 631
NlaIV	GGNNCC	2 cut(s)	394, 674
NmuCI	GTSAC	2 cut(s)	277, 502
NsiI	ATGCAT	1 cut(s)	417
NspV	TTCGAA	1 cut(s)	109
PagI	TCATGA	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PfeI	GAWTC	4 cut(s)	489, 593, 623, 661
PflMI	CCANNNNNTGG	1 cut(s)	59
PinAI	ACCGGT	3 cut(s)	281, 319, 547
PkrI	GCNGC	4 cut(s)	203, 587, 642, 645
PleI	GAGTC	3 cut(s)	443, 509, 767
PpsI	GAGTC	3 cut(s)	443, 509, 767
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	394, 674
PsuI	RGATCY	2 cut(s)	184, 797
RsaI	GTAC	3 cut(s)	173, 224, 616
RsaNI	GTAC	3 cut(s)	172, 223, 615
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	560, 693
SatI	GCNGC	4 cut(s)	202, 586, 641, 644
Sau3AI	GATC	5 cut(s)	28, 156, 175, 184, 797
SchI	GAGTC	3 cut(s)	443, 510, 767
ScrFI	CCNGG	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	3 cut(s)	424, 641, 644
SspMI	CTAG	1 cut(s)	826
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	4 cut(s)	341, 614, 619, 755
TaqI	TCGA	4 cut(s)	109, 141, 159, 265
TasI	AATT	1 cut(s)	419
TauI	GCSGC	2 cut(s)	643, 646
TfiI	GAWTC	4 cut(s)	489, 593, 623, 661
Tru1I	TTAA	2 cut(s)	560, 693
Tru9I	TTAA	2 cut(s)	560, 693
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	277, 502
TseI	GCWGC	2 cut(s)	201, 585
Tsp45I	GTSAC	2 cut(s)	277, 502
TspDTI	ATGAA	6 cut(s)	48, 62, 99, 432, 754, 804
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XspI	CTAG	1 cut(s)	826
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.