Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004002.1

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

35507 .. 37053

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004002.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaggtgacaaaggttaaattcaaggatgatgatgaggaattagcaggtgggatgcttccagggtttcggtttcatccgaccgatgaagaactagttgggttttatctgccggttaaggtggagaagaaaaaggtttctactagattggatcaactcatcagacagattgatatctacaaatatgatccctgggatcttccaattagcactgagggagacaaagagtgctacttcttctgcagaagagggagaaaatacaggaacagcataagacctaacagagtcacaggatctggattttggaaagccactggcattgacaaacccatttattcagctaaggaacctctcgaatgcatcggactcaagaaatcgttagtgtactaccgagggagtgcaggaaaaggcaccaaaaccgactggatgatgaatgagtttcgccttccacctaatgggaaaagttctaccaacttcctcaatgtcaaagacaatacacaagaagctgtaagattacactccttctgtatacttctttttcttaattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

183

Amino Acids

21.16

Weight (kDa)

9.18

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	529
AclWI	GGATC	4 cut(s)	159, 182, 204, 301
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	25
AhlI	ACTAGT	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	61, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	2 cut(s)	341, 506
AluI	AGCT	2 cut(s)	341, 506
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	4 cut(s)	159, 182, 204, 301
AlwNI	CAGNNNCTG	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	410
BciT130I	CCWGG	2 cut(s)	63, 193
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	2 cut(s)	95, 144
BfmI	CTRYAG	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	63, 193
BmiI	GGNNCC	2 cut(s)	348, 412
BmrFI	CCNGG	2 cut(s)	63, 193
BmsI	GCATC	2 cut(s)	45, 369
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	62, 191, 192, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	319, 428
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	63, 193
BseDI	CCNNGG	4 cut(s)	62, 191, 192, 391
BseGI	GGATG	4 cut(s)	34, 60, 76, 432
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	319, 428
BsgI	GTGCAG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	362
Bsp143I	GATC	4 cut(s)	151, 187, 196, 293
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	348, 412
BspMAI	CTGCAG	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	159, 182, 204, 301
BspT107I	GGYRCC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	319, 428
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	4 cut(s)	62, 191, 192, 391
BssMI	GATC	4 cut(s)	151, 187, 196, 293
BssNAI	GTATAC	1 cut(s)	530
Bst1107I	GTATAC	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	63, 193
Bst6I	CTCTTC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	213, 342, 549
BstF5I	GGATG	4 cut(s)	34, 60, 76, 432
BstKTI	GATC	4 cut(s)	154, 190, 199, 296
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	4 cut(s)	151, 187, 196, 293
BstMCI	CGRYCG	1 cut(s)	84
BstNI	CCWGG	2 cut(s)	63, 193
BstSCI	CCNGG	2 cut(s)	61, 191
BstSFI	CTRYAG	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	196, 293
BstYI	RGATCY	2 cut(s)	196, 293
BstZ17I	GTATAC	1 cut(s)	530
BtsCI	GGATG	4 cut(s)	34, 60, 76, 432
BtsIMutI	CAGTG	2 cut(s)	210, 312
BveI	ACCTGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviJI	RGCY	3 cut(s)	311, 341, 506
CviKI_1	RGCY	3 cut(s)	311, 341, 506
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	3 cut(s)	213, 342, 549
DpnI	GATC	4 cut(s)	153, 189, 198, 295
DpnII	GATC	4 cut(s)	151, 187, 196, 293
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	61, 191
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	362
FaiI	YATR	3 cut(s)	186, 272, 530
FblI	GTMKAC	1 cut(s)	529
FokI	GGATG	4 cut(s)	41, 63, 67, 439
FspBI	CTAG	2 cut(s)	95, 144
HapII	CCGG	1 cut(s)	113
HinfI	GANTC	2 cut(s)	285, 366
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	385, 530
Hpy188I	TCNGA	3 cut(s)	81, 164, 365
Hpy188III	TCNNGA	3 cut(s)	297, 353, 370
Hpy8I	GTNNAC	2 cut(s)	385, 530
HpyAV	CCTTC	2 cut(s)	455, 532
HpyCH4V	TGCA	3 cut(s)	243, 360, 401
HpyF3I	CTNAG	3 cut(s)	213, 342, 549
Kzo9I	GATC	4 cut(s)	151, 187, 196, 293
LweI	GCATC	2 cut(s)	45, 369
MaeI	CTAG	2 cut(s)	95, 144
MaeIII	GTNAC	2 cut(s)	7, 286
MalI	GATC	4 cut(s)	153, 189, 198, 295
MboI	GATC	4 cut(s)	151, 187, 196, 293
MboII	GAAGA	5 cut(s)	101, 139, 191, 229, 258
MflI	RGATCY	2 cut(s)	196, 293
MluCI	AATT	4 cut(s)	20, 41, 204, 544
MlyI	GAGTC	2 cut(s)	294, 360
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	31, 208, 242, 360, 386, 488
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	3 cut(s)	18, 117, 543
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	63, 193
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	63, 193
NdeII	GATC	4 cut(s)	151, 187, 196, 293
NlaIV	GGNNCC	2 cut(s)	348, 412
NmuCI	GTSAC	2 cut(s)	7, 286
NsiI	ATGCAT	1 cut(s)	362
PaqCI	CACCTGC	1 cut(s)	38
PasI	CCCWGGG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	455
PleI	GAGTC	2 cut(s)	293, 360
PpsI	GAGTC	2 cut(s)	293, 360
Psp6I	CCWGG	2 cut(s)	61, 191
PspGI	CCWGG	2 cut(s)	61, 191
PspN4I	GGNNCC	2 cut(s)	348, 412
PstI	CTGCAG	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	196, 293
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	3 cut(s)	18, 117, 543
Sau3AI	GATC	4 cut(s)	151, 187, 196, 293
SchI	GAGTC	2 cut(s)	294, 360
ScrFI	CCNGG	2 cut(s)	63, 193
SfaNI	GCATC	2 cut(s)	45, 369
SfcI	CTRYAG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	4 cut(s)	20, 41, 204, 544
SspMI	CTAG	2 cut(s)	95, 144
StyD4I	CCNGG	2 cut(s)	61, 191
TaqI	TCGA	1 cut(s)	354
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	20, 41, 204, 544
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	3 cut(s)	18, 117, 543
Tru9I	TTAA	3 cut(s)	18, 117, 543
TscAI	CASTG	2 cut(s)	217, 319
TseFI	GTSAC	2 cut(s)	7, 286
Tsp45I	GTSAC	2 cut(s)	7, 286
TspDTI	ATGAA	3 cut(s)	65, 102, 446
TspRI	CASTG	2 cut(s)	217, 319
Van91I	CCANNNNNTGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	2 cut(s)	95, 144
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.