Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

69695493 .. 69696026

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATTAAACTTTATAAATCTAATTACTGCTTTGCTTTACTTGAATTGGTGTTGCAGGAAGTATGGACACTGTGCAGAATATTCAAAAGAATCCCATCTTACAAGAAATATACACCAAATTGGAAGGAAGAAGCCACATCAACTAAGCAGAATCCTAATACAACTGATTCAAATTCTAAAACATGCAGCTTGGAGTCTGAGAACTGCAGTACTCATGATCCATATTCGAGCCTCGAAGACTCGGTTGTCATTCAACACATTAATGAAAGAAAGCCAGTTGTGGAACAAGTCCATCGTGGTGAAACAAATTATCACTGGTTTAGTGGAAGGCAGTTGGGCCCTCTAGCTGATGAACATCATCATGAGGTTCATTCATTCGCAACATCTTATAATAGTTCATCCTTCATGAGAAATGAGCTCTCTTTAGATCAAAGCGAAACCGATAATTTCTTTACAGACGGAAGCTGCTGGGATGAGTTGAGACCAGTAGTTCAATTGGCTATGGATTCATCCACGAAGTTCATGACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

177

Amino Acids

20.55

Weight (kDa)

5.58

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 390
AasI	GACNNNNNNGTC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	44, 85, 171, 254, 494
AluBI	AGCT	4 cut(s)	189, 347, 418, 465
AluI	AGCT	4 cut(s)	189, 347, 418, 465
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	337
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	186, 465
ApoI	RAATTY	1 cut(s)	172
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	337, 338
AsuHPI	GGTGA	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	341, 420
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	198, 452
BccI	CCATC	2 cut(s)	103, 300
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	2 cut(s)	187, 466
BlsI	GCNGC	2 cut(s)	188, 467
BmcAI	AGTACT	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	337, 338
BmiI	GGNNCC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	275, 320, 485
Bse8I	GATNNNNATC	1 cut(s)	354
BseGI	GGATG	3 cut(s)	398, 478, 509
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	275, 320, 485
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	198, 452
BseYI	CCCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	341, 420
Bsp143I	GATC	2 cut(s)	217, 427
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	4 cut(s)	214, 361, 405, 522
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	275, 320, 485
BssMI	GATC	2 cut(s)	217, 427
Bst4CI	ACNGT	2 cut(s)	72, 529
BstDEI	CTNAG	2 cut(s)	144, 198
BstF5I	GGATG	3 cut(s)	398, 478, 509
BstKTI	GATC	2 cut(s)	220, 430
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	2 cut(s)	217, 427
BstNSI	RCATGY	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	198, 452
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	398, 478, 509
BtsIMutI	CAGTG	2 cut(s)	68, 313
CciI	TCATGA	4 cut(s)	214, 361, 405, 522
Cfr13I	GGNCC	2 cut(s)	337, 338
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	5 cut(s)	183, 215, 362, 406, 523
CviJI	RGCY	9 cut(s)	134, 189, 231, 274, 339, 347, 418, 465, 500
CviKI_1	RGCY	9 cut(s)	134, 189, 231, 274, 339, 347, 418, 465, 500
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	144, 198
DpnI	GATC	2 cut(s)	219, 429
DpnII	GATC	2 cut(s)	217, 427
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	341, 420
Eco31I	GGTCTC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT38I	GRGCYC	2 cut(s)	341, 420
FaeI	CATG	5 cut(s)	186, 218, 365, 409, 526
FatI	CATG	5 cut(s)	182, 214, 361, 405, 522
Fnu4HI	GCNGC	2 cut(s)	187, 466
FokI	GGATG	3 cut(s)	385, 485, 496
FriOI	GRGCYC	2 cut(s)	341, 420
Fsp4HI	GCNGC	2 cut(s)	187, 466
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	187, 466
GsaI	CCCAGC	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	186, 218, 365, 409, 526
HinfI	GANTC	6 cut(s)	90, 151, 167, 194, 239, 506
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	215, 362, 406, 523
HpyAV	CCTTC	3 cut(s)	118, 321, 412
HpyCH4III	ACNGT	2 cut(s)	72, 529
HpyCH4V	TGCA	4 cut(s)	55, 75, 186, 207
HpyF3I	CTNAG	2 cut(s)	144, 198
Hsp92II	CATG	5 cut(s)	186, 218, 365, 409, 526
Kzo9I	GATC	2 cut(s)	217, 427
LpnPI	CCDG	5 cut(s)	41, 288, 301, 454, 498
Lsp1109I	GCAGC	2 cut(s)	198, 452
MaeI	CTAG	1 cut(s)	344
MalI	GATC	2 cut(s)	219, 429
MboI	GATC	2 cut(s)	217, 427
MboII	GAAGA	2 cut(s)	140, 248
MfeI	CAATTG	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	341, 420
MluCI	AATT	7 cut(s)	22, 44, 118, 172, 307, 445, 494
MlyI	GAGTC	2 cut(s)	203, 233
MnlI	CCTC	3 cut(s)	242, 351, 358
MseI	TTAA	2 cut(s)	6, 261
MslI	CAYNNNNRTG	3 cut(s)	261, 297, 360
MunI	CAATTG	1 cut(s)	494
NdeII	GATC	2 cut(s)	217, 427
NlaIII	CATG	5 cut(s)	186, 218, 365, 409, 526
NlaIV	GGNNCC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	186
PagI	TCATGA	4 cut(s)	214, 361, 405, 522
PfeI	GAWTC	4 cut(s)	90, 151, 167, 506
PkrI	GCNGC	2 cut(s)	188, 467
PleI	GAGTC	2 cut(s)	202, 233
PpsI	GAGTC	2 cut(s)	202, 233
PshBI	ATTAAT	1 cut(s)	261
PsiI	TTATAA	2 cut(s)	15, 390
Psp124BI	GAGCTC	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	339
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	337, 338
PstI	CTGCAG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	3 cut(s)	261, 297, 360
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	6, 261
SatI	GCNGC	2 cut(s)	187, 466
Sau3AI	GATC	2 cut(s)	217, 427
Sau96I	GGNCC	2 cut(s)	337, 338
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	203, 233
SduI	GDGCHC	2 cut(s)	341, 420
SetI	ASST	5 cut(s)	191, 349, 369, 420, 467
SfcI	CTRYAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	3 cut(s)	261, 297, 360
Sse9I	AATT	7 cut(s)	22, 44, 118, 172, 307, 445, 494
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	72, 529
TaqI	TCGA	2 cut(s)	227, 234
TasI	AATT	7 cut(s)	22, 44, 118, 172, 307, 445, 494
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	4 cut(s)	90, 151, 167, 506
Tru1I	TTAA	2 cut(s)	6, 261
Tru9I	TTAA	2 cut(s)	6, 261
TscAI	CASTG	2 cut(s)	75, 320
TseI	GCWGC	2 cut(s)	186, 465
TspDTI	ATGAA	8 cut(s)	279, 359, 363, 366, 387, 394, 498, 511
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	75, 320
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.