Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

11568160 .. 11572398

Gene Structure 4239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1147500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGACGTGACAAAGGCGGTGAGAAATTCAACAGAGAAGGTTGAGGATGAAGAGGAAGTGATGCTTCCAGGGTTTAGATTTCATCCAACAGATGAGGAGCTTGTTGGGTTTTATCTAAAGAGGAAGGTGGAGAAGAGAGCCATTCGTATGGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTCCCAACTAGCAGCGTGGGGGACAATGAGTGCTACTTCTTTTGCAGAAGAGGAAGAAAATATAGGAACAGCATAAGACCTAACAGAGTCACAGATTCTGGATTTTGGAAAGCCACTGGGATTGACAAGCCTATATATTCTGTTAAAGATCCCCTCAAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGAATGAGTTTCGCCTTCCTCCTAATGGCCATGGGAAAAATGCCAAGTTCCTAAAGGCCAAAGTCGACGTTACACAAGAAGAAGCTGAGGTCTGGACACTCTGCCGAATTTTCAAACGAATCCCATCTTATAAAAAGTACACACCAGACTGCAAAGAATCCACGACCAGACAAAACCCTACTGATTCAAGTTCTAAAACATGCAGCTTCGAATCTGGGAGCTACTGCAGTGAGCTACACTTTGGTCTCGAAGATTCGGTCATTCAACGCATTGAAAGATCAAAACCAGTTCGTGTGGATGAACAAGTTGACGAAACAAATCACTGGCTTGGAGGGGAGTTCGACCCTATATATGACCCGACTCCATTTGCAACAACTTATTCAAGCTTTAGGAACCCGAGCGAGGGCGATTTCTTTACTAATGGAAACTGGGATGAGCTGAGACCAGTGGTTCAGCTGGCTGTTGATCCGTCGTCCCAAGTTTATGACTGTAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

309

Amino Acids

35.7

Weight (kDa)

7.51

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 148	3.5e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	407
AccI	GTMKAC	2 cut(s)	381, 492
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	4 cut(s)	179, 201, 338, 887
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	25, 534
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	452, 829, 830
AgsI	TTSAA	6 cut(s)	30, 541, 615, 692, 701, 810
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	8 cut(s)	100, 512, 633, 648, 661, 813, 865, 883
AluI	AGCT	8 cut(s)	100, 512, 633, 648, 661, 813, 865, 883
Alw26I	GTCTC	2 cut(s)	677, 862
AlwI	GGATC	4 cut(s)	179, 201, 338, 887
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	823
AoxI	GGCC	3 cut(s)	361, 454, 483
ApeKI	GCWGC	2 cut(s)	207, 630
ApoI	RAATTY	2 cut(s)	25, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	636
AvaI	CYCGRG	1 cut(s)	823
BalI	TGGCCA	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	219, 642
BccI	CCATC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	677, 862
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	2 cut(s)	652, 916
BisI	GCNGC	2 cut(s)	208, 631
BlsI	GCNGC	2 cut(s)	209, 632
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	823
BmgBI	CACGTC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	409, 821
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	2 cut(s)	321, 865
BmsI	GCATC	1 cut(s)	51
BmuI	ACTGGG	2 cut(s)	321, 865
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	335, 350
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	677, 862
BsaJI	CCNNGG	4 cut(s)	68, 188, 388, 457
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 829, 830
Bse1I	ACTGG	5 cut(s)	316, 713, 755, 860, 872
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	68, 188, 388, 457
BseGI	GGATG	5 cut(s)	52, 82, 429, 730, 865
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	452, 829, 830
BseMII	CTCAG	2 cut(s)	504, 857
BseNI	ACTGG	5 cut(s)	316, 713, 755, 860, 872
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	219, 642
BshFI	GGCC	3 cut(s)	363, 456, 485
BshNI	GGYRCC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	823
BslFI	GGGAC	2 cut(s)	230, 886
BslI	CCNNNNNNNGG	3 cut(s)	452, 829, 830
BsmAI	GTCTC	2 cut(s)	677, 862
BsmFI	GGGAC	2 cut(s)	230, 886
BsnI	GGCC	3 cut(s)	363, 456, 485
Bso31I	GGTCTC	2 cut(s)	677, 862
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	184, 193, 343, 704, 892
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	3 cut(s)	363, 456, 485
BspCNI	CTCAG	2 cut(s)	505, 858
BspLI	GGNNCC	2 cut(s)	409, 821
BspMAI	CTGCAG	1 cut(s)	656
BspPI	GGATC	4 cut(s)	179, 201, 338, 887
BspT104I	TTCGAA	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	2 cut(s)	677, 862
BsrI	ACTGG	5 cut(s)	316, 713, 755, 860, 872
BssECI	CCNNGG	4 cut(s)	68, 188, 388, 457
BssMI	GATC	5 cut(s)	184, 193, 343, 704, 892
BssT1I	CCWWGG	2 cut(s)	188, 457
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	389, 917
Bst6I	CTCTTC	3 cut(s)	45, 128, 238
BstBI	TTCGAA	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	400, 885
BstDEI	CTNAG	2 cut(s)	513, 866
BstDSI	CCRYGG	2 cut(s)	388, 457
BstF5I	GGATG	5 cut(s)	52, 82, 429, 730, 865
BstKTI	GATC	5 cut(s)	187, 196, 346, 707, 895
BstMAI	GTCTC	2 cut(s)	677, 862
BstMBI	GATC	5 cut(s)	184, 193, 343, 704, 892
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	652, 916
BstV1I	GCAGC	2 cut(s)	219, 642
BstX2I	RGATCY	2 cut(s)	193, 343
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	193, 343
BsuRI	GGCC	3 cut(s)	363, 456, 485
BtgI	CCRYGG	2 cut(s)	388, 457
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	5 cut(s)	52, 82, 429, 730, 865
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	4 cut(s)	309, 661, 748, 879
Cac8I	GCNNGC	2 cut(s)	400, 885
CaiI	CAGNNNCTG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	565
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	2 cut(s)	458, 627
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	513, 866
DpnI	GATC	5 cut(s)	186, 195, 345, 706, 894
DpnII	GATC	5 cut(s)	184, 193, 343, 704, 892
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	3 cut(s)	45, 128, 238
EarI	CTCTTC	3 cut(s)	45, 128, 238
Eco130I	CCWWGG	2 cut(s)	188, 457
Eco31I	GGTCTC	2 cut(s)	677, 862
Eco32I	GATATC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	188, 457
ErhI	CCWWGG	2 cut(s)	188, 457
FaeI	CATG	2 cut(s)	461, 630
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	230, 886
FatI	CATG	2 cut(s)	457, 626
FblI	GTMKAC	2 cut(s)	381, 492
Fnu4HI	GCNGC	2 cut(s)	208, 631
FokI	GGATG	5 cut(s)	59, 69, 436, 737, 872
Fsp4HI	GCNGC	2 cut(s)	208, 631
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	208, 631
HaeIII	GGCC	3 cut(s)	363, 456, 485
Hin1II	CATG	2 cut(s)	461, 630
HincII	GTYRAC	2 cut(s)	493, 736
HindII	GTYRAC	2 cut(s)	493, 736
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	8 cut(s)	282, 290, 546, 584, 611, 638, 680, 787
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	4 cut(s)	382, 493, 567, 736
Hpy188III	TCNNGA	4 cut(s)	294, 367, 520, 674
Hpy8I	GTNNAC	4 cut(s)	382, 493, 567, 736
Hpy99I	CGWCG	2 cut(s)	497, 901
HpyAV	CCTTC	3 cut(s)	31, 118, 452
HpyCH4III	ACNGT	2 cut(s)	389, 917
HpyCH4IV	ACGT	2 cut(s)	6, 495
HpyCH4V	TGCA	6 cut(s)	240, 357, 579, 630, 654, 797
HpyF3I	CTNAG	2 cut(s)	513, 866
HpySE526I	ACGT	2 cut(s)	6, 495
Hsp92II	CATG	2 cut(s)	461, 630
Kzo9I	GATC	5 cut(s)	184, 193, 343, 704, 892
LmnI	GCTCC	2 cut(s)	97, 645
Lsp1109I	GCAGC	2 cut(s)	219, 642
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	6, 495
MaeIII	GTNAC	3 cut(s)	7, 283, 496
MalI	GATC	5 cut(s)	186, 195, 345, 706, 894
MboI	GATC	5 cut(s)	184, 193, 343, 704, 892
MboII	GAAGA	6 cut(s)	62, 145, 255, 261, 518, 689
MflI	RGATCY	2 cut(s)	193, 343
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	2 cut(s)	25, 534
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	2 cut(s)	291, 781
MmeI	TCCRAC	1 cut(s)	110
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	883
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	5 cut(s)	184, 193, 343, 704, 892
NlaIII	CATG	2 cut(s)	461, 630
NlaIV	GGNNCC	2 cut(s)	409, 821
NmuCI	GTSAC	2 cut(s)	7, 283
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	636
PfeI	GAWTC	6 cut(s)	290, 546, 584, 611, 638, 680
PkrI	GCNGC	2 cut(s)	209, 632
PleI	GAGTC	2 cut(s)	290, 781
PpsI	GAGTC	2 cut(s)	290, 781
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	409, 821
PstI	CTGCAG	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	193, 343
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	208, 631
Sau3AI	GATC	5 cut(s)	184, 193, 343, 704, 892
SchI	GAGTC	2 cut(s)	291, 781
ScrFI	CCNGG	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	2 cut(s)	652, 916
SfuI	TTCGAA	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	350, 365
SmoI	CTYRAG	2 cut(s)	350, 365
Sse9I	AATT	2 cut(s)	25, 534
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	188, 457
TaaI	ACNGT	2 cut(s)	389, 917
TaiI	ACGT	2 cut(s)	9, 498
TaqI	TCGA	4 cut(s)	492, 636, 675, 768
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	2 cut(s)	25, 534
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	6 cut(s)	290, 546, 584, 611, 638, 680
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	4 cut(s)	316, 661, 755, 879
TseFI	GTSAC	2 cut(s)	7, 283
TseI	GCWGC	2 cut(s)	207, 630
Tsp45I	GTSAC	2 cut(s)	7, 283
TspDTI	ATGAA	4 cut(s)	63, 71, 443, 741
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	4 cut(s)	316, 661, 755, 879
XapI	RAATTY	2 cut(s)	25, 534
XceI	RCATGY	1 cut(s)	630
XmiI	GTMKAC	2 cut(s)	381, 492
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.