Rh5CG150800

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002908
Physical Location & Seq
Reverse (-)
13860077 .. 13862059
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG150800.1

Sequence Viewer

Length: 966 bp
ATGATCAGAAGGCACCAAGAGGAAGAAGCTAAACAGAAAATGGAAGTGCAGAAGATGATGATGAGGGATTCGATTAACAACACCAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTGAGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAATATGATCCCTGGGATCTTCCAAAAGCTAGTGGTTTAGTTGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAAGCAACCGGCATTGACAAACCTGTGTATTCGGTTGAAGGAGAATTTCACACTTGCATTGGCTTAAAGAAATCCCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGATTGGATGATGCACGAATTTCGTCTTCCAGCTACTAATGCAAGCACTGGTGCTAATTCTAATATCAATGACATTACTCAAGAAGCTGAAGTTTGGACCCTATGCAGAATTTTGAAACGAACCAATTCTTCTAGAAAGTATGAAACAAATTGGCAGAAGACAACTTCCAAGCAAAGTGCAGCTGATTCAAGTTCGAAAACATGCAGTTCTGAGTCGGATGGAAGTTTTGGTGCTCCGGCTGCTCAGAAGAATGATCAACTTGAAAGGATCAGCACTCCTAATTTTAACAATGATCATCTGTGCGAAGGGAACAATCATATCTCAGCAGGCCAGCTGACCTTAAAAGATGAAGTAGTTGATCCAATGGTGAACAGCTCATACATAAACTTCTGGAATCTAAATGAATATGAGATGTTAAGATCAGATAATCCCAACTGGGATGAGCTGAGTCCAATGATCGACTGCGTTCTAAATCCCTCCCCGCTATATCGATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

321

Amino Acids

37.17

Weight (kDa)

8.57

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 36 - 164 2.7e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 12, 455
AccI GTMKAC 1 cut(s) 429
AciI CCGC 1 cut(s) 947
AclWI GGATC 4 cut(s) 218, 240, 740, 818
AcsI RAATTY 3 cut(s) 392, 482, 573
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 2 cut(s) 275, 457
AgsI TTSAA 4 cut(s) 386, 580, 654, 728
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 9 cut(s) 29, 193, 245, 497, 551, 647, 799, 840, 910
AluI AGCT 9 cut(s) 29, 193, 245, 497, 551, 647, 799, 840, 910
Alw21I GWGCWC 2 cut(s) 195, 700
AlwI GGATC 4 cut(s) 218, 240, 740, 818
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 2 cut(s) 644, 704
ApoI RAATTY 3 cut(s) 392, 482, 573
Asp700I GAANNNNTTC 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 844
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 561
AxyI CCTNAGG 1 cut(s) 155
BanI GGYRCC 2 cut(s) 12, 455
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbsI GAAGAC 2 cut(s) 482, 629
Bbv12I GWGCWC 2 cut(s) 195, 700
BbvI GCAGC 2 cut(s) 656, 691
BccI CCATC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 3 cut(s) 3, 718, 757
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 3 cut(s) 246, 425, 597
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 2 cut(s) 645, 705
BlsI GCNGC 2 cut(s) 646, 706
Bme1390I CCNGG 2 cut(s) 108, 229
Bme18I GGWCC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 3 cut(s) 14, 457, 563
BmrFI CCNGG 2 cut(s) 108, 229
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 2 cut(s) 82, 465
BmuI ACTGGG 1 cut(s) 910
BpiI GAAGAC 2 cut(s) 482, 629
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 209, 528
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 955
BsaJI CCNNGG 4 cut(s) 84, 107, 227, 228
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 517, 905
Bse21I CCTNAGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 84, 107, 227, 228
BseGI GGATG 5 cut(s) 94, 121, 477, 688, 910
BseMII CTCAG 5 cut(s) 146, 666, 722, 801, 902
BseNI ACTGG 2 cut(s) 517, 905
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 656, 691
BsgI GTGCAG 2 cut(s) 68, 663
Bsh1285I CGRYCG 1 cut(s) 959
BshFI GGCC 1 cut(s) 795
BshNI GGYRCC 2 cut(s) 12, 455
BshVI ATCGAT 1 cut(s) 955
BsiEI CGRYCG 1 cut(s) 959
BsiHKAI GWGCWC 2 cut(s) 195, 700
BsiSI CCGG 3 cut(s) 107, 357, 701
BsnI GGCC 1 cut(s) 795
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 195, 700
BspACI CCGC 1 cut(s) 947
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 5 cut(s) 147, 667, 721, 800, 903
BspDI ATCGAT 1 cut(s) 955
BspLI GGNNCC 3 cut(s) 14, 457, 563
BspPI GGATC 4 cut(s) 218, 240, 740, 818
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 2 cut(s) 12, 455
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 517, 905
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 4 cut(s) 84, 107, 227, 228
BssNAI GTATAC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 508, 793, 797
BstDEI CTNAG 5 cut(s) 155, 675, 708, 787, 911
BstF5I GGATG 5 cut(s) 94, 121, 477, 688, 910
BstMCI CGRYCG 1 cut(s) 959
BstMWI GCNNNNNNNGC 2 cut(s) 503, 704
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 106, 227
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 656, 691
BstV2I GAAGAC 2 cut(s) 482, 629
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 955
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 795
BsuTUI ATCGAT 1 cut(s) 955
BtsCI GGATG 5 cut(s) 94, 121, 477, 688, 910
BtsIMutI CAGTG 2 cut(s) 126, 510
Cac8I GCNNGC 3 cut(s) 508, 793, 797
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 561
ClaI ATCGAT 1 cut(s) 955
Csp6I GTAC 2 cut(s) 274, 456
CviAII CATG 1 cut(s) 666
CviQI GTAC 2 cut(s) 274, 456
DdeI CTNAG 5 cut(s) 155, 675, 708, 787, 911
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 573
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 669
FatI CATG 1 cut(s) 665
FauI CCCGC 1 cut(s) 954
FbaI TGATCA 3 cut(s) 3, 718, 757
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 645, 705
FokI GGATG 5 cut(s) 101, 108, 484, 695, 917
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 645, 705
FspBI CTAG 3 cut(s) 246, 425, 597
GluI GCNGC 2 cut(s) 645, 705
HaeIII GGCC 1 cut(s) 795
HapII CCGG 3 cut(s) 107, 357, 701
Hin1II CATG 1 cut(s) 669
HinfI GANTC 5 cut(s) 68, 650, 677, 859, 913
HpaII CCGG 3 cut(s) 107, 357, 701
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 2 cut(s) 430, 835
Hpy188I TCNGA 5 cut(s) 8, 676, 682, 711, 889
Hpy188III TCNNGA 4 cut(s) 188, 545, 597, 856
Hpy8I GTNNAC 2 cut(s) 430, 835
HpyAV CCTTC 6 cut(s) 3, 157, 259, 282, 380, 764
HpyCH4V TGCA 9 cut(s) 49, 95, 285, 405, 478, 506, 570, 644, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 704
HpyF3I CTNAG 5 cut(s) 155, 675, 708, 787, 911
Hsp92II CATG 1 cut(s) 669
KpnI GGTACC 1 cut(s) 459
Ksp22I TGATCA 3 cut(s) 3, 718, 757
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 2 cut(s) 656, 691
LweI GCATC 2 cut(s) 82, 465
MaeI CTAG 3 cut(s) 246, 425, 597
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 9 cut(s) 35, 64, 95, 146, 227, 482, 585, 634, 724
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 195, 700
MluCI AATT 7 cut(s) 392, 482, 520, 573, 589, 613, 745
MlyI GAGTC 2 cut(s) 686, 922
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 7 cut(s) 13, 57, 138, 150, 153, 431, 952
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 5 cut(s) 75, 413, 750, 806, 881
MspA1I CMGCKG 2 cut(s) 647, 799
MspI CCGG 3 cut(s) 107, 357, 701
MspR9I CCNGG 2 cut(s) 108, 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 503, 704
NciI CCSGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 669
NlaIV GGNNCC 3 cut(s) 14, 457, 563
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 669
NspV TTCGAA 1 cut(s) 659
PasI CCCWGGG 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 68, 650, 859
PkrI GCNGC 2 cut(s) 646, 706
Ple19I CGATCG 1 cut(s) 959
PleI GAGTC 2 cut(s) 685, 921
PpsI GAGTC 2 cut(s) 685, 921
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 14, 457, 563
PspPI GGNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PsuI RGATCY 1 cut(s) 232
PvuI CGATCG 1 cut(s) 959
PvuII CAGCTG 2 cut(s) 647, 799
RsaI GTAC 2 cut(s) 275, 457
RsaNI GTAC 2 cut(s) 274, 456
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 5 cut(s) 75, 413, 750, 806, 881
SatI GCNGC 2 cut(s) 645, 705
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 2 cut(s) 686, 922
ScrFI CCNGG 2 cut(s) 108, 229
SduI GDGCHC 2 cut(s) 195, 700
SfaNI GCATC 2 cut(s) 82, 465
SfcI CTRYAG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 188, 543
SmoI CTYRAG 2 cut(s) 188, 543
Sse9I AATT 7 cut(s) 392, 482, 520, 573, 589, 613, 745
SsiI CCGC 1 cut(s) 947
SspMI CTAG 3 cut(s) 246, 425, 597
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 106, 227
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 4 cut(s) 71, 659, 924, 955
TasI AATT 7 cut(s) 392, 482, 520, 573, 589, 613, 745
TfiI GAWTC 3 cut(s) 68, 650, 859
Tru1I TTAA 5 cut(s) 75, 413, 750, 806, 881
Tru9I TTAA 5 cut(s) 75, 413, 750, 806, 881
TscAI CASTG 2 cut(s) 133, 517
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 644, 704
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 110, 147, 621, 828, 882
TspRI CASTG 2 cut(s) 133, 517
VpaK11BI GGWCC 1 cut(s) 561
XapI RAATTY 3 cut(s) 392, 482, 573
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 3 cut(s) 246, 425, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.