Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

4344115 .. 4347461

Gene Structure 3347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCTTGGACAATGGCAAGTTCATCAGGTTGGTTCCATAAGGTGAAATGCAGCAAGGATCTTCATTGTTTCTCACTCTGCAATCCAATACCATCAAGCCATGATACAACTTTTGCCGCTCGGATGTCATATCCCTCAATAAAAGGGGGACCTCAAAAGGGTAAACGTGGTACCGGAAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGAATTGAGAAAATTAGACAGGCATACATTGAAAAAGAAGATAGTAAGAAGTCGAAGCAAGTGCAACGAGAATGTATGCAGCCAAAGATGGGCAAAACAGATATTGATTATCAGGTTCTTCATGATGCCTTTTTCAAGTACCAAACTATGCCAGAGCTCACAACACTTGGTGATCTGTACCATGAAGGGAAAGAGTTTGAGGTAAAATTAAGAGAGATGAAGCCAGAATTGCTGTCATATGAACTGAAAGAAGCACTTGGTATGCCAGATGGTGCTCCTCCGCCATGTCTCATTAAATATGCAGAGATATGGTCCCCCTCATTATATCCACATTTGAAAATCCCTGGACTGAATGCTCCCATCCCCACCGGAGCTAGCTTTGGTAATCATCAACAAGATCAGCCTAATTATGAGGAAGAGCCAGTTGCTATTGGGGTGATTTGGAGAGAGAGGAAGAAGAGGAAGAACCGATGGAGGGCGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

234

Amino Acids

26.74

Weight (kDa)

9.14

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	53 - 137	4.4e-32	Domain of unknown function (DUF382)
PSP	PF04046	146 - 191	3.2e-11	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	2 cut(s)	117, 497
AclWI	GGATC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	172, 356, 395
AfiI	CCNNNNNNNGG	3 cut(s)	158, 305, 691
AgsI	TTSAA	3 cut(s)	248, 352, 553
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	4 cut(s)	193, 373, 590, 594
AluI	AGCT	4 cut(s)	193, 373, 590, 594
Alw21I	GWGCWC	2 cut(s)	375, 493
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	66
ApeKI	GCWGC	3 cut(s)	51, 209, 295
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	149, 528
AsuHPI	GGTGA	3 cut(s)	55, 398, 664
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	149, 528
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	375, 493
BbvI	GCAGC	3 cut(s)	63, 196, 307
BccI	CCATC	5 cut(s)	100, 298, 479, 584, 681
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	591, 703
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	4 cut(s)	52, 117, 210, 296
BlsI	GCNGC	4 cut(s)	53, 118, 211, 297
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	2 cut(s)	149, 528
BmgT120I	GGNCC	2 cut(s)	149, 528
BmiI	GGNNCC	4 cut(s)	35, 150, 172, 530
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	5, 559
BsaWI	WCCGGW	2 cut(s)	173, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 305, 691
Bse1I	ACTGG	2 cut(s)	220, 638
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	5, 559
BseGI	GGATG	2 cut(s)	129, 576
BseLI	CCNNNNNNNGG	3 cut(s)	158, 305, 691
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	220, 638
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	3 cut(s)	63, 196, 307
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	375, 493
BsiSI	CCGG	2 cut(s)	174, 585
BslFI	GGGAC	2 cut(s)	162, 514
BslI	CCNNNNNNNGG	3 cut(s)	158, 305, 691
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	162, 514
BsmI	GAATGC	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	375, 493
Bsp143I	GATC	4 cut(s)	58, 388, 613, 699
BspACI	CCGC	2 cut(s)	117, 497
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	35, 150, 172, 530
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	220, 638
BssECI	CCNNGG	2 cut(s)	5, 559
BssMI	GATC	4 cut(s)	58, 388, 613, 699
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	627, 668
BstC8I	GCNNGC	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	129, 576
BstKTI	GATC	4 cut(s)	61, 391, 616, 702
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	58, 388, 613, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstV1I	GCAGC	3 cut(s)	63, 196, 307
BstX2I	RGATCY	2 cut(s)	58, 699
BstYI	RGATCY	2 cut(s)	58, 699
BtsCI	GGATG	2 cut(s)	129, 576
Cac8I	GCNNGC	1 cut(s)	592
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	149, 528
Csp6I	GTAC	3 cut(s)	171, 355, 394
CviAII	CATG	4 cut(s)	101, 338, 398, 501
CviJI	RGCY	9 cut(s)	99, 193, 298, 373, 439, 590, 594, 619, 637
CviKI_1	RGCY	9 cut(s)	99, 193, 298, 373, 439, 590, 594, 619, 637
CviQI	GTAC	3 cut(s)	171, 355, 394
DpnI	GATC	4 cut(s)	60, 390, 615, 701
DpnII	GATC	4 cut(s)	58, 388, 613, 699
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	627, 668
EarI	CTCTTC	2 cut(s)	627, 668
EciI	GGCGGA	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	149, 528
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	4 cut(s)	104, 341, 401, 504
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	162, 514
FatI	CATG	4 cut(s)	100, 337, 397, 500
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	52, 117, 210, 296
FokI	GGATG	2 cut(s)	136, 563
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	52, 117, 210, 296
FspBI	CTAG	2 cut(s)	591, 703
GluI	GCNGC	4 cut(s)	52, 117, 210, 296
HapII	CCGG	2 cut(s)	174, 585
Hin1II	CATG	4 cut(s)	104, 341, 401, 504
HpaII	CCGG	2 cut(s)	174, 585
HphI	GGTGA	3 cut(s)	55, 398, 664
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	197, 338
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	6 cut(s)	51, 81, 212, 280, 295, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	104, 341, 401, 504
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	58, 388, 613, 699
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	3 cut(s)	496, 577, 587
Lsp1109I	GCAGC	3 cut(s)	63, 196, 307
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	591, 703
MaeII	ACGT	1 cut(s)	166
MalI	GATC	4 cut(s)	60, 390, 615, 701
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	4 cut(s)	58, 388, 613, 699
MboII	GAAGA	7 cut(s)	53, 266, 326, 644, 682, 685, 691
MflI	RGATCY	2 cut(s)	58, 699
MhlI	GDGCHC	2 cut(s)	375, 493
MluCI	AATT	5 cut(s)	219, 228, 422, 443, 622
MnlI	CCTC	9 cut(s)	145, 162, 409, 504, 544, 622, 660, 669, 684
MseI	TTAA	2 cut(s)	425, 510
MspI	CCGG	2 cut(s)	174, 585
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	4 cut(s)	58, 388, 613, 699
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	4 cut(s)	104, 341, 401, 504
NlaIV	GGNNCC	4 cut(s)	35, 150, 172, 530
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	627
PctI	GAATGC	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	53, 118, 211, 297
PpuMI	RGGWCCY	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	4 cut(s)	35, 150, 172, 530
PspPI	GGNCC	2 cut(s)	149, 528
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	58, 699
RsaI	GTAC	3 cut(s)	172, 356, 395
RsaNI	GTAC	3 cut(s)	171, 355, 394
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	425, 510
SatI	GCNGC	4 cut(s)	52, 117, 210, 296
Sau3AI	GATC	4 cut(s)	58, 388, 613, 699
Sau96I	GGNCC	2 cut(s)	149, 528
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	375, 493
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	2 cut(s)	149, 528
Sse9I	AATT	5 cut(s)	219, 228, 422, 443, 622
SsiI	CCGC	2 cut(s)	117, 497
SspMI	CTAG	2 cut(s)	591, 703
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	269
TasI	AATT	5 cut(s)	219, 228, 422, 443, 622
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	425, 510
Tru9I	TTAA	2 cut(s)	425, 510
TseI	GCWGC	3 cut(s)	51, 209, 295
TspDTI	ATGAA	7 cut(s)	12, 53, 193, 326, 414, 449, 471
VpaK11BI	GGWCC	2 cut(s)	149, 528
XspI	CTAG	2 cut(s)	591, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.