FvH4_3g11860

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002908
Physical Location & Seq
Reverse (-)
7002398 .. 7004540
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11860.t1

Sequence Viewer

Length: 933 bp
ATGGAAGTACAGAAGATGATGATGATGAGGGATTTGAGTAACAACAGTACTAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTCCGGAGGAAGGTGGAGAACAAACCTATTCGGCTTGAGCTCATCAAACTTCTTGACATCTACAAGTATGATCCGTGGGATCTTCCAAAAGCTAGTGGTTTAGTCGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAAGCCACCGGCATTGACAAACCTGTATATTCGGTCGGCGGAGAGTTTCAGACTTGCATTGGCTTAAAGAAATCGCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGATTGGATGATGCACGAGTTTCGTCTTCCGGCTACTAATCCAAGCACTGGTGCTCATTCTAATATCAAGGACATTACTGAAGAAGCTGAAGTTTGGACCCTTTGCAGGATTTTGAAACGAAACAACTCTTCTAGAAAGTATGAAACAAATTGGCACAAGACAACTTCCAAGCAAAGTGCAGCCGACTCAAGTTCGAAAACATGCAGTACTGAGTCAGAAGAAAGTTTTGGTGCTTCAGCTGCTCAGAAGAGTGATCCACTTGAAAGGAGCAGTACTCCTCGTTTTAACAATGATCATCTGTGCGATGGTAACAATCAACTCTCAGGCGGCCAGCTGATGACCTTAAAGGATGAAGTAGTTGATCCAATGGTGAACTCATGCATAAACTTTTGGAATCCAAATGAATATGAAATGTTAAGACCAGACAATCCCAACTGGGATGAGCTGAGTCCAATGATCGATTGTGTTCTAAATCCCTCCCCCCTATATCGATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

311

Amino Acids

35.72

Weight (kDa)

8.53

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 25 - 153 2.6e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 1 cut(s) 396
AccIII TCCGGA 1 cut(s) 123
AciI CCGC 2 cut(s) 354, 759
AclWI GGATC 4 cut(s) 185, 207, 680, 788
AcoI YGGCCR 1 cut(s) 760
AcuI CTGAAG 3 cut(s) 531, 540, 651
AfaI GTAC 6 cut(s) 9, 49, 242, 424, 640, 706
AfiI CCNNNNNNNGG 3 cut(s) 130, 479, 537
AgsI TTSAA 2 cut(s) 547, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 6 cut(s) 160, 212, 518, 671, 766, 877
AluI AGCT 6 cut(s) 160, 212, 518, 671, 766, 877
Alw21I GWGCWC 2 cut(s) 162, 487
AlwI GGATC 4 cut(s) 185, 207, 680, 788
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 1 cut(s) 760
ApeKI GCWGC 2 cut(s) 611, 671
Asp718I GGTACC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 528
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 814
AsuII TTCGAA 1 cut(s) 626
AvaII GGWCC 1 cut(s) 528
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 2 cut(s) 162, 487
BbvI GCAGC 2 cut(s) 623, 658
BccI CCATC 1 cut(s) 731
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BclI TGATCA 1 cut(s) 724
BcnI CCSGG 1 cut(s) 75
BfaI CTAG 3 cut(s) 213, 392, 564
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 3 cut(s) 612, 672, 760
BlsI GCNGC 3 cut(s) 613, 673, 761
BmcAI AGTACT 3 cut(s) 49, 640, 706
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 528
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 2 cut(s) 424, 530
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 877
BmsI GCATC 2 cut(s) 49, 432
BmuI ACTGGG 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 449
BplI GAGNNNNNCTC 2 cut(s) 691, 723
Bpu14I TTCGAA 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 176, 604
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 2 cut(s) 891, 922
BsaJI CCNNGG 2 cut(s) 74, 194
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 479, 537
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 484, 872
BseAI TCCGGA 1 cut(s) 123
BseCI ATCGAT 2 cut(s) 891, 922
BseDI CCNNGG 2 cut(s) 74, 194
BseGI GGATG 5 cut(s) 61, 88, 444, 787, 877
BseLI CCNNNNNNNGG 3 cut(s) 130, 479, 537
BseMII CTCAG 4 cut(s) 633, 689, 768, 869
BseNI ACTGG 2 cut(s) 484, 872
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 2 cut(s) 623, 658
BsgI GTGCAG 1 cut(s) 630
Bsh1285I CGRYCG 2 cut(s) 351, 926
BshFI GGCC 1 cut(s) 762
BshNI GGYRCC 1 cut(s) 422
BshVI ATCGAT 2 cut(s) 891, 922
BsiEI CGRYCG 2 cut(s) 351, 926
BsiHKAI GWGCWC 2 cut(s) 162, 487
BsiSI CCGG 4 cut(s) 74, 124, 324, 461
BslI CCNNNNNNNGG 3 cut(s) 130, 479, 537
BsnI GGCC 1 cut(s) 762
Bsp119I TTCGAA 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 162, 487
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
BspACI CCGC 2 cut(s) 354, 759
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 4 cut(s) 634, 688, 767, 870
BspDI ATCGAT 2 cut(s) 891, 922
BspEI TCCGGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 424, 530
BspPI GGATC 4 cut(s) 185, 207, 680, 788
BspT104I TTCGAA 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 2 cut(s) 484, 872
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 74, 194
BssMI GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
BssNAI GTATAC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 446
Bst1107I GTATAC 1 cut(s) 397
Bst2BI CACGAG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 565, 674
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 1 cut(s) 764
BstDEI CTNAG 5 cut(s) 51, 642, 675, 754, 878
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 5 cut(s) 61, 88, 444, 787, 877
BstKTI GATC 7 cut(s) 193, 202, 688, 727, 796, 891, 926
BstMBI GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
BstMCI CGRYCG 2 cut(s) 351, 926
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 623, 658
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 397
Bsu15I ATCGAT 2 cut(s) 891, 922
BsuRI GGCC 1 cut(s) 762
BsuTUI ATCGAT 2 cut(s) 891, 922
BtgI CCRYGG 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 5 cut(s) 61, 88, 444, 787, 877
BtsIMutI CAGTG 2 cut(s) 93, 477
Cac8I GCNNGC 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 528
ClaI ATCGAT 2 cut(s) 891, 922
Csp6I GTAC 6 cut(s) 8, 48, 241, 423, 639, 705
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 2 cut(s) 633, 810
CviQI GTAC 6 cut(s) 8, 48, 241, 423, 639, 705
DdeI CTNAG 5 cut(s) 51, 642, 675, 754, 878
DpnI GATC 7 cut(s) 192, 201, 687, 726, 795, 890, 925
DpnII GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 2 cut(s) 565, 674
EarI CTCTTC 2 cut(s) 565, 674
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 3 cut(s) 531, 540, 651
EcoICRI GAGCTC 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 815
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 2 cut(s) 636, 813
FatI CATG 2 cut(s) 632, 809
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 612, 672, 760
FokI GGATG 5 cut(s) 68, 75, 451, 794, 884
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 612, 672, 760
FspBI CTAG 3 cut(s) 213, 392, 564
GluI GCNGC 3 cut(s) 612, 672, 760
HaeIII GGCC 1 cut(s) 762
HapII CCGG 4 cut(s) 74, 124, 324, 461
Hin1II CATG 2 cut(s) 636, 813
HinfI GANTC 4 cut(s) 617, 644, 826, 880
HpaII CCGG 4 cut(s) 74, 124, 324, 461
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 2 cut(s) 397, 805
Hpy188I TCNGA 3 cut(s) 366, 649, 678
Hpy188III TCNNGA 3 cut(s) 124, 173, 564
Hpy8I GTNNAC 2 cut(s) 397, 805
HpyAV CCTTC 3 cut(s) 124, 226, 249
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 8 cut(s) 62, 252, 372, 445, 537, 611, 636, 813
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 5 cut(s) 51, 642, 675, 754, 878
Hsp92II CATG 2 cut(s) 636, 813
Kpn2I TCCGGA 1 cut(s) 123
KpnI GGTACC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
LmnI GCTCC 1 cut(s) 699
Lsp1109I GCAGC 2 cut(s) 623, 658
LweI GCATC 2 cut(s) 49, 432
MaeI CTAG 3 cut(s) 213, 392, 564
MaeIII GTNAC 3 cut(s) 38, 295, 740
MalI GATC 7 cut(s) 192, 201, 687, 726, 795, 890, 925
MboI GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
MboII GAAGA 9 cut(s) 25, 62, 113, 194, 449, 524, 552, 662, 691
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 162, 487
MluCI AATT 1 cut(s) 580
MlyI GAGTC 3 cut(s) 611, 653, 889
MnlI CCTC 7 cut(s) 21, 105, 120, 131, 398, 720, 919
Mph1103I ATGCAT 1 cut(s) 815
MroI TCCGGA 1 cut(s) 123
MseI TTAA 4 cut(s) 380, 717, 776, 848
MspA1I CMGCKG 2 cut(s) 671, 766
MspI CCGG 4 cut(s) 74, 124, 324, 461
MspR9I CCNGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 671
NciI CCSGG 1 cut(s) 75
NdeII GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
NlaIII CATG 2 cut(s) 636, 813
NlaIV GGNNCC 2 cut(s) 424, 530
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 815
NspI RCATGY 1 cut(s) 636
NspV TTCGAA 1 cut(s) 626
PfeI GAWTC 1 cut(s) 826
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 3 cut(s) 613, 673, 761
Ple19I CGATCG 1 cut(s) 926
PleI GAGTC 3 cut(s) 611, 652, 888
PpsI GAGTC 3 cut(s) 611, 652, 888
Psp124BI GAGCTC 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 424, 530
PspPI GGNCC 1 cut(s) 528
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 926
PvuII CAGCTG 2 cut(s) 671, 766
RsaI GTAC 6 cut(s) 9, 49, 242, 424, 640, 706
RsaNI GTAC 6 cut(s) 8, 48, 241, 423, 639, 705
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 380, 717, 776, 848
SatI GCNGC 3 cut(s) 612, 672, 760
Sau3AI GATC 7 cut(s) 190, 199, 685, 724, 793, 888, 923
Sau96I GGNCC 1 cut(s) 528
ScaI AGTACT 3 cut(s) 49, 640, 706
SchI GAGTC 3 cut(s) 611, 653, 889
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 2 cut(s) 162, 487
SfaNI GCATC 2 cut(s) 49, 432
SfcI CTRYAG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 626
SinI GGWCC 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 155, 619
SmoI CTYRAG 2 cut(s) 155, 619
Sse9I AATT 1 cut(s) 580
SsiI CCGC 2 cut(s) 354, 759
SspMI CTAG 3 cut(s) 213, 392, 564
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 626, 891, 922
TaqII GACCGA 1 cut(s) 337
TasI AATT 1 cut(s) 580
TatI WGTACW 4 cut(s) 7, 47, 638, 704
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 1 cut(s) 826
Tru1I TTAA 4 cut(s) 380, 717, 776, 848
Tru9I TTAA 4 cut(s) 380, 717, 776, 848
TscAI CASTG 2 cut(s) 100, 484
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 611, 671
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 6 cut(s) 77, 114, 588, 798, 849, 855
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 100, 484
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 563
XceI RCATGY 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 213, 392, 564
ZrmI AGTACT 3 cut(s) 49, 640, 706
Zsp2I ATGCAT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.