Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

19470346 .. 19473006

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGACGTGGCGAAGGTGATGAGAAATTCTTCAGATCAGAAGGTTAAGGAGGATGATGAGGAAATCATGCTTCCAGGGTTTAGATTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTATTTAAAGAAGAAGGTGGAGAAGAAACCCATTAGCATGGAGCTCATTAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGTAAGCACTGTGGGGGATAAAGAGTGCTACTTCTTTTGCAGAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAACAGAGTGACGGGTTCTGGATTTTGGAAAGCGACTGGCATTGACAAGCCCATATATTCAGTGAAAGAGCCCCTCGAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGAATGAGTTTCGCCTTCCACCTCACGGCCATGGGAAAACTACCAACTTCCTCAATGCTAAGGACATTACACAAGAAGCTGAAGTTTGGACACTCTGCAGAATTTTCAAACGAATCCCATCTTACAAAAAGTACACACCAGATGACTGGAAAGAAGGCAACACCAAACAAAACCCTACCGATTCAAGTTCTAAAACATGCAGCTTCGAATCTGAGAACTACTGCGGCGAGCCACACGTGAGCCCTCAAGAGTCGGTCGTCATGCAACGCATTGAAAGATCATCATCAAAACCAGTTCGTGTGGACGAACAAGTTGATGAAACAAATCAGTGGTTTAAATTTGTAGAGGAGACTCCATATGCAACATCTTATTCAAGCTTGAGGGATATTCCAAGCGACAACGATTTCTTTATAAATGGAAACTGGGATGAGCTGAGACCAGTGGTGCAGCTGGCTGTTGATCCATCTTTCCCAAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

306

Amino Acids

35.41

Weight (kDa)

7.55

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	848
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	3 cut(s)	185, 207, 890
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	25, 537, 773
AcuI	CTGAAG	2 cut(s)	15, 537
AcvI	CACGTG	1 cut(s)	673
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	544, 621, 710, 810
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	7 cut(s)	106, 160, 515, 639, 813, 868, 886
AluI	AGCT	7 cut(s)	106, 160, 515, 639, 813, 868, 886
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	779, 865
AlwI	GGATC	3 cut(s)	185, 207, 890
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	281, 370, 463
ApeKI	GCWGC	2 cut(s)	636, 883
ApoI	RAATTY	3 cut(s)	25, 537, 773
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	642
AvaI	CYCGRG	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	162, 357, 680
BbrPI	CACGTG	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	648, 895
BccI	CCATC	2 cut(s)	562, 907
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	779, 865
BfmI	CTRYAG	1 cut(s)	532
BisI	GCNGC	3 cut(s)	637, 661, 884
BlsI	GCNGC	3 cut(s)	638, 662, 885
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	868
BmuI	ACTGGG	1 cut(s)	868
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	359, 666, 835
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	2 cut(s)	176, 718
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	74, 194, 397, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	5 cut(s)	325, 587, 728, 863, 875
Bse8I	GATNNNNATC	2 cut(s)	176, 718
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	74, 194, 397, 466
BseGI	GGATG	4 cut(s)	58, 88, 438, 868
BseJI	GATNNNNATC	2 cut(s)	176, 718
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	639, 860
BseNI	ACTGG	5 cut(s)	325, 587, 728, 863, 875
BseRI	GAGGAG	2 cut(s)	116, 797
BseXI	GCAGC	2 cut(s)	648, 895
BsgI	GTGCAG	1 cut(s)	902
Bsh1285I	CGRYCG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	283, 372, 465
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	779, 865
BsnI	GGCC	3 cut(s)	283, 372, 465
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	3 cut(s)	162, 357, 680
Bsp143I	GATC	5 cut(s)	34, 190, 199, 713, 895
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	283, 372, 465
BspCNI	CTCAG	2 cut(s)	640, 861
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	3 cut(s)	185, 207, 890
BspT104I	TTCGAA	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	865
BsrI	ACTGG	5 cut(s)	325, 587, 728, 863, 875
BssECI	CCNNGG	4 cut(s)	74, 194, 397, 466
BssMI	GATC	5 cut(s)	34, 190, 199, 713, 895
BssT1I	CCWWGG	2 cut(s)	194, 466
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	220, 398
Bst6I	CTCTTC	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	3 cut(s)	409, 665, 888
BstDEI	CTNAG	3 cut(s)	495, 648, 869
BstDSI	CCRYGG	2 cut(s)	397, 466
BstF5I	GGATG	4 cut(s)	58, 88, 438, 868
BstKTI	GATC	5 cut(s)	37, 193, 202, 716, 898
BstMAI	GTCTC	2 cut(s)	779, 865
BstMBI	GATC	5 cut(s)	34, 190, 199, 713, 895
BstMCI	CGRYCG	1 cut(s)	693
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	648, 895
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	2 cut(s)	154, 582
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	283, 372, 465
BtgI	CCRYGG	2 cut(s)	397, 466
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	4 cut(s)	58, 88, 438, 868
BtsIMutI	CAGTG	4 cut(s)	216, 351, 770, 882
Cac8I	GCNNGC	3 cut(s)	409, 665, 888
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	67, 154, 467, 633, 697
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	3 cut(s)	495, 648, 869
DpnI	GATC	5 cut(s)	36, 192, 201, 715, 897
DpnII	GATC	5 cut(s)	34, 190, 199, 713, 895
DraI	TTTAAA	2 cut(s)	123, 772
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	194, 466
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	3 cut(s)	162, 357, 680
Eco31I	GGTCTC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	15, 537
Eco72I	CACGTG	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	194, 466
EcoT38I	GRGCYC	3 cut(s)	162, 357, 680
ErhI	CCWWGG	2 cut(s)	194, 466
FaeI	CATG	5 cut(s)	70, 157, 470, 636, 700
FatI	CATG	5 cut(s)	66, 153, 466, 632, 696
FauNDI	CATATG	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	637, 661, 884
FokI	GGATG	4 cut(s)	65, 75, 445, 875
FriOI	GRGCYC	3 cut(s)	162, 357, 680
Fsp4HI	GCNGC	3 cut(s)	637, 661, 884
GluI	GCNGC	3 cut(s)	637, 661, 884
HaeIII	GGCC	3 cut(s)	283, 372, 465
Hin1II	CATG	5 cut(s)	70, 157, 470, 636, 700
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	5 cut(s)	549, 617, 644, 686, 787
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	391, 570, 739
Hpy188I	TCNGA	3 cut(s)	34, 39, 649
Hpy188III	TCNNGA	3 cut(s)	303, 376, 683
Hpy8I	GTNNAC	3 cut(s)	391, 570, 739
HpyAV	CCTTC	5 cut(s)	7, 34, 124, 461, 584
HpyCH4III	ACNGT	2 cut(s)	220, 398
HpyCH4IV	ACGT	2 cut(s)	6, 672
HpyCH4V	TGCA	7 cut(s)	249, 366, 534, 636, 700, 797, 883
HpyF3I	CTNAG	3 cut(s)	495, 648, 869
HpySE526I	ACGT	2 cut(s)	6, 672
Hsp92II	CATG	5 cut(s)	70, 157, 470, 636, 700
Kzo9I	GATC	5 cut(s)	34, 190, 199, 713, 895
LmnI	GCTCC	2 cut(s)	103, 157
Lsp1109I	GCAGC	2 cut(s)	648, 895
MaeII	ACGT	2 cut(s)	6, 672
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	5 cut(s)	36, 192, 201, 715, 897
MboI	GATC	5 cut(s)	34, 190, 199, 713, 895
MboII	GAAGA	5 cut(s)	21, 139, 151, 194, 264
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	3 cut(s)	162, 357, 680
MluCI	AATT	3 cut(s)	25, 537, 773
MlyI	GAGTC	2 cut(s)	695, 781
MmeI	TCCRAC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	4 cut(s)	45, 122, 165, 771
MslI	CAYNNNNRTG	2 cut(s)	152, 465
MspA1I	CMGCKG	1 cut(s)	886
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	5 cut(s)	34, 190, 199, 713, 895
NlaIII	CATG	5 cut(s)	70, 157, 470, 636, 700
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	636
NspV	TTCGAA	1 cut(s)	642
PaeR7I	CTCGAG	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	549, 617, 644
PkrI	GCNGC	3 cut(s)	638, 662, 885
PleI	GAGTC	2 cut(s)	694, 781
PmaCI	CACGTG	1 cut(s)	673
PmlI	CACGTG	1 cut(s)	673
PpsI	GAGTC	2 cut(s)	694, 781
Ppu21I	YACGTR	1 cut(s)	673
PsiI	TTATAA	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	418
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	2 cut(s)	152, 465
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	45, 122, 165, 771
SatI	GCNGC	3 cut(s)	637, 661, 884
Sau3AI	GATC	5 cut(s)	34, 190, 199, 713, 895
SchI	GAGTC	2 cut(s)	695, 781
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	3 cut(s)	162, 357, 680
SfcI	CTRYAG	1 cut(s)	532
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	642
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	152, 465
SmlI	CTYRAG	4 cut(s)	359, 374, 681, 814
SmoI	CTYRAG	4 cut(s)	359, 374, 681, 814
Sse9I	AATT	3 cut(s)	25, 537, 773
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	660
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	194, 466
TaaI	ACNGT	2 cut(s)	220, 398
TaiI	ACGT	2 cut(s)	9, 675
TaqI	TCGA	2 cut(s)	360, 642
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	25, 537, 773
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	3 cut(s)	549, 617, 644
Tru1I	TTAA	4 cut(s)	45, 122, 165, 771
Tru9I	TTAA	4 cut(s)	45, 122, 165, 771
TscAI	CASTG	4 cut(s)	223, 351, 770, 882
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	636, 883
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	77, 452, 768
TspRI	CASTG	4 cut(s)	223, 351, 770, 882
XapI	RAATTY	3 cut(s)	25, 537, 773
XceI	RCATGY	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.