Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

11617690 .. 11620702

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1147600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGGTGACAAAGGCGGTGAGAAATTCATCAGAAAAGATTGAGGATGAAGAGGAAGTGATGCTTCCAGGGTTTAGATTTCATCCAACAGATGAGGAACTTGTTGGGTTTTATCTAAAGAGGAAGGTGGAGAAGAGAGCCATTCGTATGGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTCCCAAGTAAGACCCCTCAAGGCTCCAGATGTTTAGTTAATTATTTTGAGTTACTGATGGTCATCGTGGGGGACAATGAGTGCTACTTCTTTTGCAGAAGAGGAAGAAAATATAGGAACAGCATAAGACCTAACAGAGTCACAAGTTCTGGATTTTGGAAAGCCACTGGGATTGACAAGCCTATATATTCAGTTAAAGATCCCCTCGAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGAATGAGTTTCGCCTTCCTCCTAATGGCCAAGGGAAAAATGCCAAGTTCCTAAGGGCCAAAGTCGACGTTACACAAGAAGAAGCTTTGCTGCGCTCCCCTAGAAGTATACTGTCCTTCGGTTTTGATGTTCTACTATGCAATTTTGCATCATACATGGAGTTGCGTTATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

218

Amino Acids

25.3

Weight (kDa)

9.27

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 165	1.9e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccI	GTMKAC	3 cut(s)	432, 543, 586
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	3 cut(s)	179, 201, 389
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
AlwI	GGATC	3 cut(s)	179, 201, 389
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	3 cut(s)	412, 505, 534
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	19, 31
AvaI	CYCGRG	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	69
BfaI	CTAG	1 cut(s)	579
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	220, 460
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	51, 635
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	2 cut(s)	198, 401
BsaBI	GATNNNNATC	2 cut(s)	170, 257
BsaJI	CCNNGG	4 cut(s)	68, 188, 439, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	367
Bse21I	CCTNAGG	1 cut(s)	530
Bse8I	GATNNNNATC	2 cut(s)	170, 257
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	68, 188, 439, 508
BseGI	GGATG	3 cut(s)	52, 82, 480
BseJI	GATNNNNATC	2 cut(s)	170, 257
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	555
BshFI	GGCC	3 cut(s)	414, 507, 536
BshNI	GGYRCC	1 cut(s)	458
BsiHKCI	CYCGRG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	414, 507, 536
BsoBI	CYCGRG	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	184, 193, 394
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	3 cut(s)	414, 507, 536
BspLI	GGNNCC	2 cut(s)	220, 460
BspPI	GGATC	3 cut(s)	179, 201, 389
BspT107I	GGYRCC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	4 cut(s)	68, 188, 439, 508
BssMI	GATC	3 cut(s)	184, 193, 394
BssNAI	GTATAC	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	188, 508
Bst1107I	GTATAC	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	440, 591
Bst6I	CTCTTC	3 cut(s)	45, 128, 289
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	52, 82, 480
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	3 cut(s)	187, 196, 397
BstMBI	GATC	3 cut(s)	184, 193, 394
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	193, 394
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	193, 394
BstZ17I	GTATAC	1 cut(s)	587
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	414, 507, 536
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	52, 82, 480
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	534
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	1 cut(s)	634
CviJI	RGCY	8 cut(s)	140, 219, 359, 376, 414, 507, 536, 563
CviKI_1	RGCY	8 cut(s)	140, 219, 359, 376, 414, 507, 536, 563
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	3 cut(s)	186, 195, 396
DpnII	GATC	3 cut(s)	184, 193, 394
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	45, 128, 289
EarI	CTCTTC	3 cut(s)	45, 128, 289
Eco130I	CCWWGG	2 cut(s)	188, 508
Eco32I	GATATC	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	188, 508
ErhI	CCWWGG	2 cut(s)	188, 508
FaeI	CATG	1 cut(s)	637
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	633
FblI	GTMKAC	3 cut(s)	432, 543, 586
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	3 cut(s)	59, 69, 487
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	414, 507, 536
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	1 cut(s)	333
HphI	GGTGA	2 cut(s)	19, 31
Hpy166II	GTNNAC	3 cut(s)	433, 544, 587
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	222, 345, 418
Hpy8I	GTNNAC	3 cut(s)	433, 544, 587
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	3 cut(s)	118, 503, 604
HpyCH4III	ACNGT	2 cut(s)	440, 591
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	4 cut(s)	291, 408, 618, 626
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	184, 193, 394
LmnI	GCTCC	2 cut(s)	224, 578
LpnPI	CCDG	6 cut(s)	54, 81, 235, 330, 348, 435
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	51, 635
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	7, 246, 334, 547
MalI	GATC	3 cut(s)	186, 195, 396
MboI	GATC	3 cut(s)	184, 193, 394
MboII	GAAGA	5 cut(s)	62, 145, 306, 312, 569
MflI	RGATCY	2 cut(s)	193, 394
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	3 cut(s)	25, 235, 619
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	9 cut(s)	37, 46, 88, 114, 222, 290, 410, 425, 507
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	3 cut(s)	234, 390, 652
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	184, 193, 394
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	220, 460
NmuCI	GTSAC	2 cut(s)	7, 334
PaeR7I	CTCGAG	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	220, 460
PspPI	GGNCC	1 cut(s)	534
PspXI	VCTCGAGB	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	193, 394
RseI	CAYNNNNRTG	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	234, 390, 652
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	3 cut(s)	184, 193, 394
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	5 cut(s)	9, 129, 328, 549, 565
SfaNI	GCATC	2 cut(s)	51, 635
Sfr274I	CTCGAG	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	3 cut(s)	213, 401, 416
SmoI	CTYRAG	3 cut(s)	213, 401, 416
Sse9I	AATT	3 cut(s)	25, 235, 619
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	188, 508
TaaI	ACNGT	2 cut(s)	440, 591
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	402, 543
TasI	AATT	3 cut(s)	25, 235, 619
Tru1I	TTAA	3 cut(s)	234, 390, 652
Tru9I	TTAA	3 cut(s)	234, 390, 652
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	7, 334
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	2 cut(s)	7, 334
TspDTI	ATGAA	4 cut(s)	18, 63, 71, 494
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	401
XmiI	GTMKAC	3 cut(s)	432, 543, 586
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.