RLG00000032435

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002908
Physical Location & Seq
Reverse (-)
15123336 .. 15124875
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032435

Sequence Viewer

Length: 924 bp
ATGGAAGTGCAGAAGATGATGATGAGGGATTCGATTAACAACGCTAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTCAGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAATATGATCCCTGGGATCTACCAAAAGCTAGTGGTTTAGTTGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAGGCAACCGGCATTGACAAACCTGTATATTCGGTTGAAGGAGAATTTCACACTTGCATTGGCTTAAAGAAATCCCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGATTGGATGATGCACGAATTTCGTCTTCCAGCTACTAATGCAAGCACTGGTGCTAATTCTAATATCAATGACATTACTCAAGAAGCTGAAGTTTGGACCCTATGCAGAATTTTGAAACGAAACAGTTCTTCTAGAAAGTATGAAACAAATTGTCAGAAGACAACTTCCAAGCAAAGTGCAGCTGACTCAAGTTCGAAAACATGCAGTTCTGAGTCGGATGGAAGTTTTGGTGCTCCGGCTGCTCAGAAGAATGATCAACTTGAAAGGATCAGTACTCCTAATTTTAACAATGATCATCTGTGGGAAGGGAACAATCATATCTCAGCAGAACAGCTGACCTTAAAAGATGAAGTAGTTGATCCAATGGTGAACTCATACATAAACTTCTGGAATCTAAATGAATATGAGATGTTAAGATCAGATAATCCCAACTGGGATGAGCTGAGTCCAATGATCGACTGCGTTCTAAATCCCTCCCCGCTATATCGATCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

308

Amino Acids

35.46

Weight (kDa)

8.09

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 23 - 151 2.4e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 390
AciI CCGC 1 cut(s) 905
AclWI GGATC 4 cut(s) 179, 201, 701, 779
AcsI RAATTY 3 cut(s) 353, 443, 534
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 3 cut(s) 236, 418, 700
AgsI TTSAA 3 cut(s) 347, 541, 689
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 7 cut(s) 154, 206, 458, 512, 608, 760, 868
AluI AGCT 7 cut(s) 154, 206, 458, 512, 608, 760, 868
Alw21I GWGCWC 2 cut(s) 156, 661
AlwI GGATC 4 cut(s) 179, 201, 701, 779
ApeKI GCWGC 2 cut(s) 605, 665
ApoI RAATTY 3 cut(s) 353, 443, 534
Asp700I GAANNNNTTC 1 cut(s) 550
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 522
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 805
AsuII TTCGAA 1 cut(s) 620
AvaII GGWCC 1 cut(s) 522
AxyI CCTNAGG 1 cut(s) 116
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbsI GAAGAC 2 cut(s) 443, 590
Bbv12I GWGCWC 2 cut(s) 156, 661
BbvI GCAGC 2 cut(s) 617, 652
BccI CCATC 1 cut(s) 638
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 2 cut(s) 679, 718
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 3 cut(s) 207, 386, 558
BfmI CTRYAG 1 cut(s) 394
BisI GCNGC 2 cut(s) 606, 666
BlsI GCNGC 2 cut(s) 607, 667
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 69, 190
Bme18I GGWCC 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 522
BmiI GGNNCC 2 cut(s) 418, 524
BmrFI CCNGG 2 cut(s) 69, 190
BmrI ACTGGG 1 cut(s) 868
BmsI GCATC 2 cut(s) 43, 426
BmuI ACTGGG 1 cut(s) 868
BpiI GAAGAC 2 cut(s) 443, 590
Bpu10I CCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 3 cut(s) 170, 489, 598
BpuMI CCSGG 1 cut(s) 69
Bsa29I ATCGAT 2 cut(s) 913, 917
BsaJI CCNNGG 3 cut(s) 68, 188, 189
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 478, 863
Bse21I CCTNAGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 190
BseCI ATCGAT 2 cut(s) 913, 917
BseDI CCNNGG 3 cut(s) 68, 188, 189
BseGI GGATG 5 cut(s) 55, 82, 438, 649, 868
BseMII CTCAG 5 cut(s) 130, 627, 683, 762, 860
BseNI ACTGG 2 cut(s) 478, 863
BseXI GCAGC 2 cut(s) 617, 652
BsgI GTGCAG 2 cut(s) 29, 624
Bsh1285I CGRYCG 1 cut(s) 917
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 2 cut(s) 913, 917
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 2 cut(s) 156, 661
BsiSI CCGG 3 cut(s) 68, 318, 662
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 156, 661
Bsp143I GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
BspACI CCGC 1 cut(s) 905
BspCNI CTCAG 5 cut(s) 129, 628, 682, 761, 861
BspDI ATCGAT 2 cut(s) 913, 917
BspLI GGNNCC 2 cut(s) 418, 524
BspPI GGATC 4 cut(s) 179, 201, 701, 779
BspT104I TTCGAA 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 2 cut(s) 478, 863
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 68, 188, 189
BssMI GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
BssNAI GTATAC 1 cut(s) 391
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
BstF5I GGATG 5 cut(s) 55, 82, 438, 649, 868
BstKTI GATC 9 cut(s) 187, 196, 682, 696, 721, 787, 845, 882, 917
BstMBI GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
BstMCI CGRYCG 1 cut(s) 917
BstMWI GCNNNNNNNGC 2 cut(s) 464, 665
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 67, 188
BstSFI CTRYAG 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 617, 652
BstV2I GAAGAC 2 cut(s) 443, 590
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 391
Bsu15I ATCGAT 2 cut(s) 913, 917
Bsu36I CCTNAGG 1 cut(s) 116
BsuTUI ATCGAT 2 cut(s) 913, 917
BtsCI GGATG 5 cut(s) 55, 82, 438, 649, 868
BtsIMutI CAGTG 2 cut(s) 87, 471
Cac8I GCNNGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 522
ClaI ATCGAT 2 cut(s) 913, 917
Csp6I GTAC 3 cut(s) 235, 417, 699
CviAII CATG 1 cut(s) 627
CviJI RGCY 9 cut(s) 154, 206, 372, 458, 512, 608, 665, 760, 868
CviKI_1 RGCY 9 cut(s) 154, 206, 372, 458, 512, 608, 665, 760, 868
CviQI GTAC 3 cut(s) 235, 417, 699
DdeI CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
DpnI GATC 9 cut(s) 186, 195, 681, 695, 720, 786, 844, 881, 916
DpnII GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 534
Eco81I CCTNAGG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 1 cut(s) 630
FatI CATG 1 cut(s) 626
FauI CCCGC 1 cut(s) 912
FbaI TGATCA 2 cut(s) 679, 718
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 606, 666
FokI GGATG 5 cut(s) 62, 69, 445, 656, 875
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 606, 666
FspBI CTAG 3 cut(s) 207, 386, 558
GluI GCNGC 2 cut(s) 606, 666
HapII CCGG 3 cut(s) 68, 318, 662
Hin1II CATG 1 cut(s) 630
HinfI GANTC 5 cut(s) 29, 611, 638, 817, 871
HpaII CCGG 3 cut(s) 68, 318, 662
HphI GGTGA 1 cut(s) 805
Hpy166II GTNNAC 2 cut(s) 391, 796
Hpy188I TCNGA 5 cut(s) 582, 637, 643, 672, 847
Hpy188III TCNNGA 5 cut(s) 118, 149, 506, 558, 814
Hpy8I GTNNAC 2 cut(s) 391, 796
HpyAV CCTTC 6 cut(s) 118, 220, 243, 304, 341, 725
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 9 cut(s) 10, 56, 246, 366, 439, 467, 531, 605, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 665
HpyF3I CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
Hsp92II CATG 1 cut(s) 630
KpnI GGTACC 1 cut(s) 420
Ksp22I TGATCA 2 cut(s) 679, 718
Kzo9I GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 2 cut(s) 617, 652
LweI GCATC 2 cut(s) 43, 426
MaeI CTAG 3 cut(s) 207, 386, 558
MaeIII GTNAC 1 cut(s) 289
MalI GATC 9 cut(s) 186, 195, 681, 695, 720, 786, 844, 881, 916
MboI GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
MboII GAAGA 7 cut(s) 25, 56, 107, 443, 546, 595, 685
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 156, 661
MluCI AATT 6 cut(s) 353, 443, 481, 534, 574, 706
MlyI GAGTC 3 cut(s) 605, 647, 880
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 6 cut(s) 18, 99, 114, 125, 392, 910
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 5 cut(s) 36, 374, 711, 767, 839
MspA1I CMGCKG 2 cut(s) 608, 760
MspI CCGG 3 cut(s) 68, 318, 662
MspR9I CCNGG 2 cut(s) 69, 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 464, 665
NciI CCSGG 1 cut(s) 69
NdeII GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
NlaIII CATG 1 cut(s) 630
NlaIV GGNNCC 2 cut(s) 418, 524
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 630
NspV TTCGAA 1 cut(s) 620
PasI CCCWGGG 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 2 cut(s) 29, 817
PkrI GCNGC 2 cut(s) 607, 667
Ple19I CGATCG 1 cut(s) 917
PleI GAGTC 3 cut(s) 605, 646, 879
PpsI GAGTC 3 cut(s) 605, 646, 879
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 418, 524
PspPI GGNCC 1 cut(s) 522
PsuI RGATCY 1 cut(s) 193
PvuI CGATCG 1 cut(s) 917
PvuII CAGCTG 2 cut(s) 608, 760
RsaI GTAC 3 cut(s) 236, 418, 700
RsaNI GTAC 3 cut(s) 235, 417, 699
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 5 cut(s) 36, 374, 711, 767, 839
SatI GCNGC 2 cut(s) 606, 666
Sau3AI GATC 9 cut(s) 184, 193, 679, 693, 718, 784, 842, 879, 914
Sau96I GGNCC 1 cut(s) 522
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 3 cut(s) 605, 647, 880
ScrFI CCNGG 2 cut(s) 69, 190
SduI GDGCHC 2 cut(s) 156, 661
SfaNI GCATC 2 cut(s) 43, 426
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 149, 504, 613
SmoI CTYRAG 3 cut(s) 149, 504, 613
Sse9I AATT 6 cut(s) 353, 443, 481, 534, 574, 706
SsiI CCGC 1 cut(s) 905
SspMI CTAG 3 cut(s) 207, 386, 558
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 67, 188
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 5 cut(s) 32, 620, 882, 913, 917
TasI AATT 6 cut(s) 353, 443, 481, 534, 574, 706
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 2 cut(s) 29, 817
Tru1I TTAA 5 cut(s) 36, 374, 711, 767, 839
Tru9I TTAA 5 cut(s) 36, 374, 711, 767, 839
TscAI CASTG 2 cut(s) 94, 478
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 605, 665
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 5 cut(s) 71, 108, 582, 789, 840
TspRI CASTG 2 cut(s) 94, 478
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 3 cut(s) 353, 443, 534
XbaI TCTAGA 1 cut(s) 557
XceI RCATGY 1 cut(s) 630
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 3 cut(s) 207, 386, 558
ZrmI AGTACT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.