Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

5496176 .. 5498961

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G106100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGTTCAGAATATGATGAGTGATTCAAACAACATTAAGGAAGATACAAATTTGCTTCCTGGGTATCGTTTTCATCCCACTGATGAAGAGCTTGTGAGGTTTTATCTTCGGAGGAAGGTGGAGAACAAACCCATTCGTCTAGAACTCATCAAACTTATTGATATTTACAAATATGACCCTTGGGATCTTCCAAAAGCTAGCGGCATTGTTGGGGGCAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAGTACAGAAATAGCGTAAGACCCAACCGGGTCACAAAATCAGGGTTTTGGAAAGCCACTGGCATTGATAAGCCTGTATATTCTGTTGGTGACTTTCACAGTTGCATTGGCTTAAAGAAATCCCTAGTCTACTACCGGGGAAGTGCCGGAAAGGGTACCAAAACGGACTGGATGATGCACGAATTCCGCCTTCCGGCTAGTTCAAGCAAGGATGACACTTCTAACATCAAGAACTATACTCAAGAAGCTGAAGTTTGGACACTTTGCAGGATTTTGAAGCGAGATAATAATTATTCTTGCAGAAAGTATGCATCAAATTGGCAAAAGGCAACTTCGAATCCAAAGCAAATTGTGGCTGACTCAAGTTCTAAACCATGCAGTCCTGAATCGGATATAAGTTTTGGTGCTTTGGCTGCTAATAAGGATCAATTTGAAAGGAGCCCTATTTTCTATAACGGTCATATGTACGAAGGAAACCGATTTTCCGCAGGTGATCAGCTGAGCTTAAAAGGTGAAGTTGATCCAATGGTGAACTCATACATAAGCTTTTCGAATCCAAAAGAAGATGAGATGTTAACATCAGATGGAAACTGGGATGAGCTAAGACCAATGGTCGACTGTGTTCTAAATCCATCACTGCTATATAGTTGCAGGGTTGGCACGTTGGAAAGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

310

Amino Acids

35.52

Weight (kDa)

8.88

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AccI	GTMKAC	2 cut(s)	381, 867
AciI	CCGC	3 cut(s)	204, 439, 738
AclWI	GGATC	3 cut(s)	195, 684, 767
AcsI	RAATTY	2 cut(s)	52, 434
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	4 cut(s)	230, 257, 409, 719
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	30, 456, 529, 686
AhdI	GACNNNNNGTC	1 cut(s)	863
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	7 cut(s)	94, 200, 500, 751, 756, 798, 853
AluI	AGCT	7 cut(s)	94, 200, 500, 751, 756, 798, 853
AlwI	GGATC	3 cut(s)	195, 684, 767
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	2 cut(s)	52, 434
Asp718I	GGTACC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	281, 389
AsuHPI	GGTGA	4 cut(s)	353, 755, 776, 793
AsuII	TTCGAA	2 cut(s)	587, 803
AsuNHI	GCTAGC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	695
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	2 cut(s)	830, 892
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	281, 389
BfaI	CTAG	4 cut(s)	143, 201, 377, 450
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	2 cut(s)	205, 666
BlpI	GCTNAGC	1 cut(s)	752
BlsI	GCNGC	2 cut(s)	206, 667
Bme1390I	CCNGG	3 cut(s)	63, 281, 389
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	409, 692
BmrFI	CCNGG	3 cut(s)	63, 281, 389
BmrI	ACTGGG	1 cut(s)	853
BmsI	GCATC	2 cut(s)	417, 572
BmtI	GCTAGC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	853
Bpu1102I	GCTNAGC	1 cut(s)	752
Bpu14I	TTCGAA	2 cut(s)	587, 803
BpuEI	CTTGAG	2 cut(s)	477, 598
BpuMI	CCSGG	2 cut(s)	281, 389
BsaJI	CCNNGG	3 cut(s)	62, 182, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	316, 425, 848
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	62, 182, 388
BseGI	GGATG	4 cut(s)	76, 429, 469, 853
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	3 cut(s)	316, 425, 848
BseXI	GCAGC	1 cut(s)	652
BshNI	GGYRCC	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	280, 388, 399, 446
BslI	CCNNNNNNNGG	1 cut(s)	445
Bsp119I	TTCGAA	2 cut(s)	587, 803
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	187, 676, 745, 772
Bsp1720I	GCTNAGC	1 cut(s)	752
BspACI	CCGC	3 cut(s)	204, 439, 738
BspCNI	CTCAG	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	409, 692
BspMI	ACCTGC	1 cut(s)	731
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	3 cut(s)	195, 684, 767
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	2 cut(s)	587, 803
BspT107I	GGYRCC	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	316, 425, 848
BssECI	CCNNGG	3 cut(s)	62, 182, 388
BssMI	GATC	4 cut(s)	187, 676, 745, 772
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	353, 710, 872
Bst6I	CTCTTC	1 cut(s)	84
BstBI	TTCGAA	2 cut(s)	587, 803
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	752, 854
BstF5I	GGATG	4 cut(s)	76, 429, 469, 853
BstKTI	GATC	4 cut(s)	190, 679, 748, 775
BstMBI	GATC	4 cut(s)	187, 676, 745, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	665, 909
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	61, 279, 387
BstV1I	GCAGC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	76, 429, 469, 853
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	3 cut(s)	81, 309, 887
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	202
Csp6I	GTAC	4 cut(s)	229, 256, 408, 718
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	1 cut(s)	627
CviQI	GTAC	4 cut(s)	229, 256, 408, 718
DdeI	CTNAG	2 cut(s)	752, 854
DpnI	GATC	4 cut(s)	189, 678, 747, 774
DpnII	GATC	4 cut(s)	187, 676, 745, 772
DriI	GACNNNNNGTC	1 cut(s)	863
Eam1104I	CTCTTC	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	1 cut(s)	630
FatI	CATG	1 cut(s)	626
FauNDI	CATATG	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	2 cut(s)	381, 867
Fnu4HI	GCNGC	2 cut(s)	205, 666
FokI	GGATG	4 cut(s)	63, 436, 476, 860
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	2 cut(s)	205, 666
FspBI	CTAG	4 cut(s)	143, 201, 377, 450
GluI	GCNGC	2 cut(s)	205, 666
HapII	CCGG	4 cut(s)	280, 388, 399, 446
Hin1II	CATG	1 cut(s)	630
HincII	GTYRAC	2 cut(s)	828, 868
HindII	GTYRAC	2 cut(s)	828, 868
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	5 cut(s)	26, 589, 611, 638, 805
HpaI	GTTAAC	1 cut(s)	828
HpaII	CCGG	4 cut(s)	280, 388, 399, 446
HphI	GGTGA	4 cut(s)	353, 755, 776, 793
Hpy166II	GTNNAC	4 cut(s)	382, 784, 828, 868
Hpy188I	TCNGA	4 cut(s)	12, 114, 643, 835
Hpy188III	TCNNGA	4 cut(s)	143, 481, 494, 635
Hpy8I	GTNNAC	4 cut(s)	382, 784, 828, 868
HpyAV	CCTTC	4 cut(s)	112, 237, 452, 716
HpyCH4III	ACNGT	3 cut(s)	353, 710, 872
HpyCH4IV	ACGT	1 cut(s)	914
HpyCH4V	TGCA	8 cut(s)	240, 357, 430, 519, 552, 563, 630, 903
HpyF10VI	GCNNNNNNNGC	2 cut(s)	665, 909
HpyF3I	CTNAG	2 cut(s)	752, 854
HpySE526I	ACGT	1 cut(s)	914
Hsp92II	CATG	1 cut(s)	630
KpnI	GGTACC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	745
KspAI	GTTAAC	1 cut(s)	828
Kzo9I	GATC	4 cut(s)	187, 676, 745, 772
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	2 cut(s)	417, 572
MaeI	CTAG	4 cut(s)	143, 201, 377, 450
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	2 cut(s)	283, 341
MalI	GATC	4 cut(s)	189, 678, 747, 774
MboI	GATC	4 cut(s)	187, 676, 745, 772
MboII	GAAGA	5 cut(s)	56, 101, 101, 182, 827
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	6 cut(s)	52, 434, 541, 568, 600, 680
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	897
MnlI	CCTC	2 cut(s)	93, 108
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	4 cut(s)	39, 365, 758, 827
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	4 cut(s)	280, 388, 399, 446
MspR9I	CCNGG	3 cut(s)	63, 281, 389
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	665, 909
NciI	CCSGG	2 cut(s)	281, 389
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	4 cut(s)	187, 676, 745, 772
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	630
NlaIV	GGNNCC	2 cut(s)	409, 692
NmuCI	GTSAC	2 cut(s)	283, 341
NsiI	ATGCAT	1 cut(s)	565
NspV	TTCGAA	2 cut(s)	587, 803
PaqCI	CACCTGC	1 cut(s)	731
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	26, 589, 638, 805
PkrI	GCNGC	2 cut(s)	206, 667
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	409, 692
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	751
RsaI	GTAC	4 cut(s)	230, 257, 409, 719
RsaNI	GTAC	4 cut(s)	229, 256, 408, 718
SalI	GTCGAC	1 cut(s)	866
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	39, 365, 758, 827
SatI	GCNGC	2 cut(s)	205, 666
Sau3AI	GATC	4 cut(s)	187, 676, 745, 772
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	63, 281, 389
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	417, 572
SfuI	TTCGAA	2 cut(s)	587, 803
SmlI	CTYRAG	2 cut(s)	492, 613
SmoI	CTYRAG	2 cut(s)	492, 613
Sse9I	AATT	6 cut(s)	52, 434, 541, 568, 600, 680
SsiI	CCGC	3 cut(s)	204, 439, 738
SspMI	CTAG	4 cut(s)	143, 201, 377, 450
StyD4I	CCNGG	3 cut(s)	61, 279, 387
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	353, 710, 872
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	3 cut(s)	587, 803, 867
TasI	AATT	6 cut(s)	52, 434, 541, 568, 600, 680
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	4 cut(s)	26, 589, 638, 805
Tru1I	TTAA	4 cut(s)	39, 365, 758, 827
Tru9I	TTAA	4 cut(s)	39, 365, 758, 827
TscAI	CASTG	3 cut(s)	88, 316, 894
TseFI	GTSAC	2 cut(s)	283, 341
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	2 cut(s)	283, 341
TspDTI	ATGAA	2 cut(s)	65, 102
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	88, 316, 894
XapI	RAATTY	2 cut(s)	52, 434
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	2 cut(s)	381, 867
XspI	CTAG	4 cut(s)	143, 201, 377, 450
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.