Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

55342392 .. 55343567

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0431900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCACCAAGAAAGCAAGAGAGTGCACTTGAATCTTCCATACTCTTCTGCTTTCTCTTATCTTCAACTCTTCTGGTTTTGGTGCACATATATTCAAATCCCATATCGAAGGGAATGGCCGGGGAGTTTGTGGGAGGGGCTGCTCTGGGAACAGCATTCAGTGCACTGTACGACTGCGTTAAAGAGCTGATTTCCAAGAATCACATATTCAAATCCCTCCTTGTAAACATGAAATCCAGTCTTGAGACTTTAAAACCGCTTATCCAACAAATAGCGCAGTCTAACGAGCTACTGTCTCTCCCAGAGGAGGAGCTGAAAGGCTTGGAAGCAGTAATGGAGGATGGCAAAGATCTTATCAGCAAGAGCTCGAAGATTCGGCAATGGAACATCTACAAGAAGTACGAGTACGCCAACAAACTTGTCGAGTGGGATCAGTCGCTTCGGAGACAGTTGGATGTACTGAAGGTGCAAGAGGCGAGGGACGTGAAGGAGAACACGGTTTTGTTGAGGACTATAGAGGCGGCGGTCAAACGAATCGAAGAGAATGTTGTGGTAAGAAATTATAGCTCTACAGTTGAAGCTCGTGATCTGGAGAGACGTGTTGTTGAGGATCCAGCTAATAAGAGTTTTGGTTCCGAAGAAGACGACGGAGAGGGTTGTTCTGGAAAGACAGAAGTATATGGCACTGCACTTTATAACTTCACTGCCGGTGGAGAGGATGAGTTGAATTTGAGTGCTGGAGATGAGGTTGAAATTGAATATGAAGTCGACGACTGGTTTTATGTGAAGAAGAAACGCCCTGGGAAGGATGGGAAAATGGCTGGTCTAGTCCCAGTCCTCTATGTGAGATATTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

286

Amino Acids

32.14

Weight (kDa)

5.08

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	42 - 173	4.1e-29	Arabidopsis broad-spectrum mildew resistance protein RPW8
SH3_1	PF00018	229 - 271	2.4e-06	SH3 domain
SH3_9	PF14604	230 - 282	8e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	3 cut(s)	257, 521, 524
AclWI	GGATC	3 cut(s)	438, 605, 618
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	4 cut(s)	170, 401, 407, 459
AfiI	CCNNNNNNNGG	2 cut(s)	307, 805
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	8 cut(s)	32, 66, 96, 211, 578, 727, 752, 758
AjiI	CACGTC	2 cut(s)	484, 599
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	7 cut(s)	187, 289, 313, 366, 567, 581, 617
AluI	AGCT	7 cut(s)	187, 289, 313, 366, 567, 581, 617
Alw21I	GWGCWC	4 cut(s)	28, 87, 166, 368
Alw26I	GTCTC	4 cut(s)	239, 300, 439, 589
Alw44I	GTGCAC	3 cut(s)	24, 83, 162
AlwI	GGATC	3 cut(s)	438, 605, 618
AoxI	GGCC	1 cut(s)	117
ApaLI	GTGCAC	3 cut(s)	24, 83, 162
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	121
BaeGI	GKGCMC	3 cut(s)	28, 87, 166
BamHI	GGATCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	4 cut(s)	28, 87, 166, 368
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	335, 803
BciT130I	CCWGG	1 cut(s)	801
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	4 cut(s)	239, 300, 439, 589
BfaI	CTAG	1 cut(s)	827
BfmI	CTRYAG	2 cut(s)	513, 570
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	141, 522
BlsI	GCNGC	2 cut(s)	142, 523
Bme1390I	CCNGG	2 cut(s)	121, 801
BmgBI	CACGTC	2 cut(s)	484, 599
BmiI	GGNNCC	2 cut(s)	612, 634
BmrFI	CCNGG	2 cut(s)	121, 801
BmrI	ACTGGG	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	827
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	2 cut(s)	611, 759
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	120, 799, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 805
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	237, 779, 833
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	120, 799, 800
BseGI	GGATG	4 cut(s)	346, 460, 724, 814
BseLI	CCNNNNNNNGG	2 cut(s)	307, 805
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	237, 779, 833
BseRI	GAGGAG	2 cut(s)	320, 323
BseSI	GKGCMC	3 cut(s)	28, 87, 166
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	4 cut(s)	28, 87, 166, 368
BsiSI	CCGG	2 cut(s)	120, 708
BslFI	GGGAC	2 cut(s)	494, 815
BslI	CCNNNNNNNGG	2 cut(s)	307, 805
BsmAI	GTCTC	4 cut(s)	239, 300, 439, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	494, 815
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	28, 87, 166, 368
Bsp143I	GATC	4 cut(s)	349, 430, 586, 610
BspACI	CCGC	3 cut(s)	257, 521, 524
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	612, 634
BspPI	GGATC	3 cut(s)	438, 605, 618
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	237, 779, 833
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	3 cut(s)	120, 799, 800
BssMI	GATC	4 cut(s)	349, 430, 586, 610
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	5 cut(s)	168, 294, 450, 499, 574
Bst6I	CTCTTC	3 cut(s)	50, 75, 534
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstF5I	GGATG	4 cut(s)	346, 460, 724, 814
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	4 cut(s)	352, 433, 589, 613
BstMAI	GTCTC	4 cut(s)	239, 300, 439, 589
BstMBI	GATC	4 cut(s)	349, 430, 586, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	801
BstSCI	CCNGG	2 cut(s)	119, 799
BstSFI	CTRYAG	2 cut(s)	513, 570
BstSLI	GKGCMC	3 cut(s)	28, 87, 166
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	349, 610
BstYI	RGATCY	2 cut(s)	349, 610
BsuRI	GGCC	1 cut(s)	119
BtrI	CACGTC	2 cut(s)	484, 599
BtsCI	GGATG	4 cut(s)	346, 460, 724, 814
BtsI	GCAGTG	2 cut(s)	684, 702
BtsIMutI	CAGTG	4 cut(s)	164, 166, 684, 702
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	707
Csp6I	GTAC	4 cut(s)	169, 400, 406, 458
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	4 cut(s)	169, 400, 406, 458
DpnI	GATC	4 cut(s)	351, 432, 588, 612
DpnII	GATC	4 cut(s)	349, 430, 586, 610
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	3 cut(s)	50, 75, 534
EarI	CTCTTC	3 cut(s)	50, 75, 534
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	1 cut(s)	232
FaqI	GGGAC	2 cut(s)	494, 815
FatI	CATG	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	2 cut(s)	141, 522
FokI	GGATG	4 cut(s)	353, 467, 731, 821
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	141, 522
FspBI	CTAG	1 cut(s)	827
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	141, 522
GsuI	CTGGAG	2 cut(s)	611, 759
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	120, 708
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	4 cut(s)	32, 199, 373, 534
HpaII	CCGG	2 cut(s)	120, 708
Hpy166II	GTNNAC	5 cut(s)	26, 85, 164, 226, 769
Hpy188I	TCNGA	2 cut(s)	444, 637
Hpy188III	TCNNGA	5 cut(s)	242, 584, 590, 663, 858
Hpy8I	GTNNAC	5 cut(s)	26, 85, 164, 226, 769
Hpy99I	CGWCG	2 cut(s)	650, 773
HpyAV	CCTTC	4 cut(s)	103, 457, 481, 799
HpyCH4III	ACNGT	5 cut(s)	168, 294, 450, 499, 574
HpyCH4IV	ACGT	2 cut(s)	483, 598
HpyCH4V	TGCA	5 cut(s)	26, 85, 164, 469, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	483, 598
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	4 cut(s)	349, 430, 586, 610
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	2 cut(s)	483, 598
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	351, 432, 588, 612
MboI	GATC	4 cut(s)	349, 430, 586, 610
MflI	RGATCY	2 cut(s)	349, 610
MhlI	GDGCHC	4 cut(s)	28, 87, 166, 368
MluCI	AATT	3 cut(s)	559, 727, 753
MmeI	TCCRAC	2 cut(s)	289, 432
MseI	TTAA	2 cut(s)	180, 251
MspI	CCGG	2 cut(s)	120, 708
MspR9I	CCNGG	2 cut(s)	121, 801
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	801
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	4 cut(s)	349, 430, 586, 610
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	612, 634
NmuCI	GTSAC	1 cut(s)	3
PasI	CCCWGGG	1 cut(s)	800
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	4 cut(s)	32, 199, 373, 534
PkrI	GCNGC	2 cut(s)	142, 523
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	2 cut(s)	612, 634
PsuI	RGATCY	2 cut(s)	349, 610
RsaI	GTAC	4 cut(s)	170, 401, 407, 459
RsaNI	GTAC	4 cut(s)	169, 400, 406, 458
SacI	GAGCTC	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	767
SaqAI	TTAA	2 cut(s)	180, 251
SatI	GCNGC	2 cut(s)	141, 522
Sau3AI	GATC	4 cut(s)	349, 430, 586, 610
ScrFI	CCNGG	2 cut(s)	121, 801
SduI	GDGCHC	4 cut(s)	28, 87, 166, 368
SfcI	CTRYAG	2 cut(s)	513, 570
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	559, 727, 753
SsiI	CCGC	3 cut(s)	257, 521, 524
SspMI	CTAG	1 cut(s)	827
SstI	GAGCTC	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	119, 799
TaaI	ACNGT	5 cut(s)	168, 294, 450, 499, 574
TaiI	ACGT	2 cut(s)	486, 601
TaqI	TCGA	5 cut(s)	107, 368, 423, 537, 768
TasI	AATT	3 cut(s)	559, 727, 753
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	4 cut(s)	32, 199, 373, 534
Tru1I	TTAA	2 cut(s)	180, 251
Tru9I	TTAA	2 cut(s)	180, 251
TscAI	CASTG	4 cut(s)	166, 171, 691, 709
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	245, 777
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	4 cut(s)	166, 171, 691, 709
VneI	GTGCAC	3 cut(s)	24, 83, 162
XapI	RAATTY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.