RchiOBHm_Chr5g0019291

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002908
Physical Location & Seq
Reverse (-)
13694428 .. 13696061
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29942

Sequence Viewer

Length: 963 bp
ATGATCAGAAGGCACCAAGAGGAAGAAGCTAAACAGAAAATGGAAGTGCAGAAGATGATGATGAGGGATTCGATTAACAACACCAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTGAGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAATATGATCCCTGGGATCTTCCAACTAGTGGTTTAGTTGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAAGCAACCGGCATTGACAAACCTGTGTATTCGGTTGAAGGAGAATTTCACACTTGCATTGGCTTAAAGAAATCCCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGATTGGATGATGCACGAATTTCGTCTTCCAGCTACTAATGCAAGCACTGGTGCTAATTCTAATATCAATGACATTACTCAAGAAGCTGAAGTTTGGACCCTATGCAGAATTTTGAAACGAACCAATTCTTCTAGAAAGTATGAAACAAATTGGCAGAAGACAACTTCCAAGCAAAGTGCAGCTGATTCAAGTTCGAAAACATGCAGTTCTGAGTCGGATGGAAGTTTTGGTGCTCCGGCTGCTCAGAAGAATGATCAACTTGAAAGGATCAGCACTCCTAATTTTAACAATGATCATCTGTGCGAAGGGAACAATCATATCTCAGCAGGCCAGCTGACCTTAAAAGATGAAGTAGTTGATCCAATGGTGAACAGCTCATACATAAACTTCTGGAATCTAAATGAATATGAGATGTTAAGATCAGATAATCCCAACTGGGATGAGCTGAGTCCAATGATCGACTGCGTTCTAAATCCCTCCCCGCTATATCGATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

320

Amino Acids

37.08

Weight (kDa)

8.38

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 36 - 163 1.6e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 12, 452
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 426
AciI CCGC 1 cut(s) 944
AclWI GGATC 4 cut(s) 218, 240, 737, 815
AcsI RAATTY 3 cut(s) 389, 479, 570
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 272, 454
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 4 cut(s) 383, 577, 651, 725
AhlI ACTAGT 1 cut(s) 242
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 8 cut(s) 29, 193, 494, 548, 644, 796, 837, 907
AluI AGCT 8 cut(s) 29, 193, 494, 548, 644, 796, 837, 907
Alw21I GWGCWC 2 cut(s) 195, 697
AlwI GGATC 4 cut(s) 218, 240, 737, 815
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 2 cut(s) 641, 701
ApoI RAATTY 3 cut(s) 389, 479, 570
Asp700I GAANNNNTTC 1 cut(s) 586
Asp718I GGTACC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 841
AsuII TTCGAA 1 cut(s) 656
AvaII GGWCC 1 cut(s) 558
AxyI CCTNAGG 1 cut(s) 155
BanI GGYRCC 2 cut(s) 12, 452
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BbsI GAAGAC 2 cut(s) 479, 626
Bbv12I GWGCWC 2 cut(s) 195, 697
BbvI GCAGC 2 cut(s) 653, 688
BccI CCATC 1 cut(s) 674
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 3 cut(s) 3, 715, 754
BcnI CCSGG 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 3 cut(s) 243, 422, 594
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 2 cut(s) 642, 702
BlsI GCNGC 2 cut(s) 643, 703
Bme1390I CCNGG 2 cut(s) 108, 229
Bme18I GGWCC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 3 cut(s) 14, 454, 560
BmrFI CCNGG 2 cut(s) 108, 229
BmrI ACTGGG 1 cut(s) 907
BmsI GCATC 2 cut(s) 82, 462
BmuI ACTGGG 1 cut(s) 907
BpiI GAAGAC 2 cut(s) 479, 626
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 209, 525
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 952
BsaJI CCNNGG 4 cut(s) 84, 107, 227, 228
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 514, 902
Bse21I CCTNAGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 4 cut(s) 84, 107, 227, 228
BseGI GGATG 5 cut(s) 94, 121, 474, 685, 907
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 5 cut(s) 146, 663, 719, 798, 899
BseNI ACTGG 2 cut(s) 514, 902
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 653, 688
BsgI GTGCAG 2 cut(s) 68, 660
Bsh1285I CGRYCG 1 cut(s) 956
BshFI GGCC 1 cut(s) 792
BshNI GGYRCC 2 cut(s) 12, 452
BshVI ATCGAT 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 956
BsiHKAI GWGCWC 2 cut(s) 195, 697
BsiSI CCGG 3 cut(s) 107, 354, 698
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 1 cut(s) 792
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 195, 697
BspACI CCGC 1 cut(s) 944
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 5 cut(s) 147, 664, 718, 797, 900
BspDI ATCGAT 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 14, 454, 560
BspPI GGATC 4 cut(s) 218, 240, 737, 815
BspT104I TTCGAA 1 cut(s) 656
BspT107I GGYRCC 2 cut(s) 12, 452
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 2 cut(s) 514, 902
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 84, 107, 227, 228
BssNAI GTATAC 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 3 cut(s) 505, 790, 794
BstDEI CTNAG 5 cut(s) 155, 672, 705, 784, 908
BstF5I GGATG 5 cut(s) 94, 121, 474, 685, 907
BstMCI CGRYCG 1 cut(s) 956
BstMWI GCNNNNNNNGC 2 cut(s) 500, 701
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 106, 227
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 653, 688
BstV2I GAAGAC 2 cut(s) 479, 626
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 792
BsuTUI ATCGAT 1 cut(s) 952
BtsCI GGATG 5 cut(s) 94, 121, 474, 685, 907
BtsIMutI CAGTG 2 cut(s) 126, 507
Cac8I GCNNGC 3 cut(s) 505, 790, 794
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 558
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 2 cut(s) 271, 453
CviAII CATG 1 cut(s) 663
CviQI GTAC 2 cut(s) 271, 453
DdeI CTNAG 5 cut(s) 155, 672, 705, 784, 908
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 558
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 570
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 666
FatI CATG 1 cut(s) 662
FauI CCCGC 1 cut(s) 951
FbaI TGATCA 3 cut(s) 3, 715, 754
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 642, 702
FokI GGATG 5 cut(s) 101, 108, 481, 692, 914
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 642, 702
FspBI CTAG 3 cut(s) 243, 422, 594
GluI GCNGC 2 cut(s) 642, 702
HaeIII GGCC 1 cut(s) 792
HapII CCGG 3 cut(s) 107, 354, 698
Hin1II CATG 1 cut(s) 666
HinfI GANTC 5 cut(s) 68, 647, 674, 856, 910
HpaII CCGG 3 cut(s) 107, 354, 698
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 2 cut(s) 427, 832
Hpy188I TCNGA 5 cut(s) 8, 673, 679, 708, 886
Hpy188III TCNNGA 4 cut(s) 188, 542, 594, 853
Hpy8I GTNNAC 2 cut(s) 427, 832
HpyAV CCTTC 6 cut(s) 3, 157, 256, 279, 377, 761
HpyCH4V TGCA 9 cut(s) 49, 95, 282, 402, 475, 503, 567, 641, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 701
HpyF3I CTNAG 5 cut(s) 155, 672, 705, 784, 908
Hsp92II CATG 1 cut(s) 666
KpnI GGTACC 1 cut(s) 456
Ksp22I TGATCA 3 cut(s) 3, 715, 754
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 2 cut(s) 653, 688
LweI GCATC 2 cut(s) 82, 462
MaeI CTAG 3 cut(s) 243, 422, 594
MaeIII GTNAC 1 cut(s) 325
MboII GAAGA 9 cut(s) 35, 64, 95, 146, 227, 479, 582, 631, 721
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 195, 697
MluCI AATT 7 cut(s) 389, 479, 517, 570, 586, 610, 742
MlyI GAGTC 2 cut(s) 683, 919
MmeI TCCRAC 2 cut(s) 263, 657
MnlI CCTC 7 cut(s) 13, 57, 138, 150, 153, 428, 949
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 5 cut(s) 75, 410, 747, 803, 878
MspA1I CMGCKG 2 cut(s) 644, 796
MspI CCGG 3 cut(s) 107, 354, 698
MspR9I CCNGG 2 cut(s) 108, 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 500, 701
NciI CCSGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 666
NlaIV GGNNCC 3 cut(s) 14, 454, 560
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 666
NspV TTCGAA 1 cut(s) 656
PasI CCCWGGG 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 3 cut(s) 68, 647, 856
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 2 cut(s) 643, 703
Ple19I CGATCG 1 cut(s) 956
PleI GAGTC 2 cut(s) 682, 918
PpsI GAGTC 2 cut(s) 682, 918
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 14, 454, 560
PspPI GGNCC 1 cut(s) 558
PsrI GAACNNNNNNTAC 2 cut(s) 824, 856
PsuI RGATCY 1 cut(s) 232
PvuI CGATCG 1 cut(s) 956
PvuII CAGCTG 2 cut(s) 644, 796
RsaI GTAC 2 cut(s) 272, 454
RsaNI GTAC 2 cut(s) 271, 453
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 5 cut(s) 75, 410, 747, 803, 878
SatI GCNGC 2 cut(s) 642, 702
Sau96I GGNCC 1 cut(s) 558
SchI GAGTC 2 cut(s) 683, 919
ScrFI CCNGG 2 cut(s) 108, 229
SduI GDGCHC 2 cut(s) 195, 697
SfaNI GCATC 2 cut(s) 82, 462
SfcI CTRYAG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 188, 540
SmoI CTYRAG 2 cut(s) 188, 540
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 7 cut(s) 389, 479, 517, 570, 586, 610, 742
SsiI CCGC 1 cut(s) 944
SspMI CTAG 3 cut(s) 243, 422, 594
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 106, 227
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 4 cut(s) 71, 656, 921, 952
TasI AATT 7 cut(s) 389, 479, 517, 570, 586, 610, 742
TfiI GAWTC 3 cut(s) 68, 647, 856
Tru1I TTAA 5 cut(s) 75, 410, 747, 803, 878
Tru9I TTAA 5 cut(s) 75, 410, 747, 803, 878
TscAI CASTG 2 cut(s) 133, 514
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 641, 701
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 110, 147, 618, 825, 879
TspRI CASTG 2 cut(s) 133, 514
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 558
XapI RAATTY 3 cut(s) 389, 479, 570
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 3 cut(s) 243, 422, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.