Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

10588550 .. 10589708

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGTGGCAAAGGTGGTGAGAAATTCATCAGAAAAGGATAAGGATGAAGAGGAAGTGATGCTTCCAGGGTTTAGATTTCATCCAACAGATGAGGAGCTTGTAGGGTTTTATCTAAAGAGGAAGGTGGAGAAGAGAGCCATTAGTATGGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGTTAGCAGTTTGGGGGACAAAGAGTGCTACTTCTTCTGCAGAAGAGGAAGAAAATATAGGAACAGCATAAGACCTAACAGAGTCACAGGTTCTGGATTTTGGAAAGCCACTGGGATTGACAAGGCCATATATTCAGTTAAAGATCGCCCACGAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

139

Amino Acids

16.52

Weight (kDa)

9.26

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 113	2e-32	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	179, 201
AcsI	RAATTY	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AlwI	GGATC	2 cut(s)	179, 201
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	327, 365
ApoI	RAATTY	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	31
BauI	CACGAG	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	68, 188, 392
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	68, 188, 392
BseGI	GGATG	2 cut(s)	52, 82
BseJI	GATNNNNATC	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	329, 367
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	329, 367
Bsp143I	GATC	3 cut(s)	184, 193, 346
BspANI	GGCC	2 cut(s)	329, 367
BspMAI	CTGCAG	1 cut(s)	245
BspPI	GGATC	2 cut(s)	179, 201
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	68, 188, 392
BssMI	GATC	3 cut(s)	184, 193, 346
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	45, 128, 241
BstC8I	GCNNGC	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	52, 82
BstKTI	GATC	3 cut(s)	187, 196, 349
BstMBI	GATC	3 cut(s)	184, 193, 346
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	329, 367
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	52, 82
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviJI	RGCY	5 cut(s)	100, 140, 311, 329, 367
CviKI_1	RGCY	5 cut(s)	100, 140, 311, 329, 367
DpnI	GATC	3 cut(s)	186, 195, 348
DpnII	GATC	3 cut(s)	184, 193, 346
Eam1104I	CTCTTC	3 cut(s)	45, 128, 241
EarI	CTCTTC	3 cut(s)	45, 128, 241
Eco130I	CCWWGG	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaiI	YATR	6 cut(s)	149, 183, 261, 272, 332, 334
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	385
FokI	GGATG	2 cut(s)	59, 69
HaeIII	GGCC	2 cut(s)	329, 367
HinfI	GANTC	1 cut(s)	285
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	297, 371
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	243, 361
Kzo9I	GATC	3 cut(s)	184, 193, 346
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	54, 81, 276, 282, 300, 388
LweI	GCATC	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	186, 195, 348
MboI	GATC	3 cut(s)	184, 193, 346
MboII	GAAGA	6 cut(s)	62, 145, 188, 229, 258, 264
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	46, 88, 114, 242, 378
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	184, 193, 346
NmuCI	GTSAC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	184, 193, 346
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	6 cut(s)	9, 18, 102, 129, 280, 295
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	393
TasI	AATT	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	18, 63, 71
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.