pycom09g06780

Transcription factor JUNGBRUNNEN 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
5012092 .. 5015758
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06780.2

Sequence Viewer

Length: 1014 bp
ATGCATGTGTGGACAGAAGAGAGAGAGCTAAGCGCAGAGAAAAATAATAGAATTGTGAGAGAGAGAGAGAGAGAGAGAGATATGGAGGTGACAAAGGCGGTGAGATATTCATCAGAAAAGGTTGAGGATGAAGAGGAAGTGATGCTTCCAGGGTTTAGATTTTATCCAACAGATGAGGAGCTTGTTGGGTTTTATCTAAAGAGGAAGGTGGAGAAGAGAGCCATTCGTATGGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGATCGATCTCCCAAAAGCTAGCAGCGTGGGGGACAATGAGTGCTACTTCTTTTGCAGAAGAGGAAGAAAATATAGGAACAGTGTAAGACCTAACAGAGTCACAGGTTCTGGATTTTGGAAAGCCACTGGGATTGACAAGCCTATAAATTCAGTTAAAGATCCACTCGAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGAATGAGTTTCGCCTTCCTCCTAATGGCCATGGCAAAAATGCCAAGTTCCTAAAGGCCAAAGTCGACGTTACACAAGAAGAAGCTGAGGTCTGGACACTCTGCCGAATTTTCAAACGAATCCCATCTTATAAAAAGTACACACCAGACTTCAAAGAATCCACGACCAGACAAAACCCTACTGATTCAAGTTCTAAAACATGCAGCTTCGAATCTGGGATCTACTGCAGTGAGCTACACGTCGGTCTCGAAGATTCGGTCTTTCAACGCATTGAAAGATCAAAACCAATTCATGTGGATGAACAAGTTGACGAAACAAATCACTGGCTTGGAGGGGAGTTGGACCCTATCTATGACCCAACTCATTTTGCAACAACTTATTCAAGCTTTAGGAACCCGAGCGACGGCGATTTCTTTACTAATGGAAACTGGGATGAGCTGAGACCAGTGGTTCAGCTGGCTGTTGATCCATCGTCCCAAGTTTATGACTGTAGAATGTAG

Protein Analysis

338

Amino Acids

39.36

Weight (kDa)

6.64

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 494
AccI GTMKAC 2 cut(s) 468, 579
AciI CCGC 1 cut(s) 98
AclWI GGATC 5 cut(s) 260, 281, 425, 740, 974
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 2 cut(s) 418, 621
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 539, 917
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 6 cut(s) 628, 667, 702, 779, 788, 897
AjiI CACGTC 1 cut(s) 754
AjnI CCWGG 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 439
AluBI AGCT 9 cut(s) 28, 181, 290, 599, 720, 748, 900, 952, 970
AluI AGCT 9 cut(s) 28, 181, 290, 599, 720, 748, 900, 952, 970
Alw26I GTCTC 2 cut(s) 764, 949
AlwI GGATC 5 cut(s) 260, 281, 425, 740, 974
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 2 cut(s) 437, 910
AoxI GGCC 3 cut(s) 448, 541, 570
ApeKI GCWGC 2 cut(s) 294, 717
ApoI RAATTY 2 cut(s) 418, 621
ArsI GACNNNNNNTTYG 2 cut(s) 756, 788
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 856
AsuHPI GGTGA 2 cut(s) 100, 112
AsuII TTCGAA 1 cut(s) 723
AsuNHI GCTAGC 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 437, 910
AvaII GGWCC 1 cut(s) 856
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 494
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 306, 729
BccI CCATC 2 cut(s) 646, 991
BceAI ACGGC 1 cut(s) 934
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 764, 949
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 2 cut(s) 739, 1003
BisI GCNGC 2 cut(s) 295, 718
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 2 cut(s) 296, 719
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 856
BmeT110I CYCGRG 2 cut(s) 437, 910
BmgBI CACGTC 1 cut(s) 754
BmgT120I GGNCC 1 cut(s) 856
BmiI GGNNCC 3 cut(s) 496, 858, 908
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 2 cut(s) 408, 952
BmsI GCATC 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 294
BmuI ACTGGG 2 cut(s) 408, 952
Bpu10I CCTNAGC 1 cut(s) 600
Bpu1102I GCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 276
BsaBI GATNNNNATC 2 cut(s) 109, 251
BsaI GGTCTC 2 cut(s) 764, 949
BsaJI CCNNGG 4 cut(s) 149, 269, 475, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 917
Bse1I ACTGG 4 cut(s) 403, 842, 947, 959
Bse8I GATNNNNATC 2 cut(s) 109, 251
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 4 cut(s) 149, 269, 475, 544
BseGI GGATG 4 cut(s) 133, 516, 817, 952
BseJI GATNNNNATC 2 cut(s) 109, 251
BseLI CCNNNNNNNGG 2 cut(s) 539, 917
BseMII CTCAG 2 cut(s) 591, 944
BseNI ACTGG 4 cut(s) 403, 842, 947, 959
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 306, 729
BshFI GGCC 3 cut(s) 450, 543, 572
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 437, 910
BslFI GGGAC 2 cut(s) 317, 973
BslI CCNNNNNNNGG 2 cut(s) 539, 917
BsmAI GTCTC 2 cut(s) 764, 949
BsmFI GGGAC 2 cut(s) 317, 973
BsnI GGCC 3 cut(s) 450, 543, 572
Bso31I GGTCTC 2 cut(s) 764, 949
BsoBI CYCGRG 2 cut(s) 437, 910
Bsp119I TTCGAA 1 cut(s) 723
Bsp143I GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
Bsp1720I GCTNAGC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 1 cut(s) 98
BspANI GGCC 3 cut(s) 450, 543, 572
BspCNI CTCAG 2 cut(s) 592, 945
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 496, 858, 908
BspMAI CTGCAG 1 cut(s) 743
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 5 cut(s) 260, 281, 425, 740, 974
BspT104I TTCGAA 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 764, 949
BsrI ACTGG 4 cut(s) 403, 842, 947, 959
BssECI CCNNGG 4 cut(s) 149, 269, 475, 544
BssMI GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
BssT1I CCWWGG 2 cut(s) 269, 544
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 353, 476, 1004
Bst6I CTCTTC 4 cut(s) 12, 126, 209, 325
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 3 cut(s) 292, 487, 972
BstDEI CTNAG 3 cut(s) 29, 600, 953
BstDSI CCRYGG 2 cut(s) 475, 544
BstF5I GGATG 4 cut(s) 133, 516, 817, 952
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 7 cut(s) 268, 276, 280, 433, 735, 794, 982
BstMAI GTCTC 2 cut(s) 764, 949
BstMBI GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 8, 717
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 739, 1003
BstV1I GCAGC 2 cut(s) 306, 729
BstX2I RGATCY 2 cut(s) 430, 732
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 430, 732
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 3 cut(s) 450, 543, 572
BsuTUI ATCGAT 1 cut(s) 276
BtgI CCRYGG 2 cut(s) 475, 544
BtrI CACGTC 1 cut(s) 754
BtsCI GGATG 4 cut(s) 133, 516, 817, 952
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 5 cut(s) 358, 396, 748, 835, 966
Cac8I GCNNGC 3 cut(s) 292, 487, 972
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 856
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 652
CspCI CAANNNNNGTGG 4 cut(s) 385, 420, 789, 824
CviAII CATG 4 cut(s) 5, 545, 714, 806
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 3 cut(s) 29, 600, 953
DpnI GATC 7 cut(s) 267, 275, 279, 432, 734, 793, 981
DpnII GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 4 cut(s) 12, 126, 209, 325
EarI CTCTTC 4 cut(s) 12, 126, 209, 325
Eco130I CCWWGG 2 cut(s) 269, 544
Eco31I GGTCTC 2 cut(s) 764, 949
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 856
Eco88I CYCGRG 2 cut(s) 437, 910
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 269, 544
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 269, 544
FaeI CATG 4 cut(s) 8, 548, 717, 809
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 317, 973
FatI CATG 4 cut(s) 4, 544, 713, 805
FblI GTMKAC 2 cut(s) 468, 579
Fnu4HI GCNGC 2 cut(s) 295, 718
FokI GGATG 4 cut(s) 140, 523, 824, 959
Fsp4HI GCNGC 2 cut(s) 295, 718
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 295, 718
HaeIII GGCC 3 cut(s) 450, 543, 572
HhaI GCGC 1 cut(s) 35
Hin1II CATG 4 cut(s) 8, 548, 717, 809
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 2 cut(s) 580, 823
HindII GTYRAC 2 cut(s) 580, 823
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 6 cut(s) 369, 633, 671, 698, 725, 767
HphI GGTGA 2 cut(s) 100, 112
Hpy166II GTNNAC 5 cut(s) 12, 469, 580, 654, 823
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 4 cut(s) 381, 454, 607, 761
Hpy8I GTNNAC 5 cut(s) 12, 469, 580, 654, 823
Hpy99I CGWCG 3 cut(s) 584, 758, 920
HpyAV CCTTC 2 cut(s) 199, 539
HpyCH4III ACNGT 3 cut(s) 353, 476, 1004
HpyCH4IV ACGT 2 cut(s) 582, 753
HpyCH4V TGCA 6 cut(s) 4, 327, 444, 717, 741, 884
HpyF3I CTNAG 3 cut(s) 29, 600, 953
HpySE526I ACGT 2 cut(s) 582, 753
Hsp92II CATG 4 cut(s) 8, 548, 717, 809
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 306, 729
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 291
MaeII ACGT 2 cut(s) 582, 753
MaeIII GTNAC 3 cut(s) 88, 370, 583
MalI GATC 7 cut(s) 267, 275, 279, 432, 734, 793, 981
MboI GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
MboII GAAGA 7 cut(s) 29, 143, 226, 342, 348, 605, 776
MflI RGATCY 2 cut(s) 430, 732
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 4 cut(s) 51, 418, 621, 801
MluNI TGGCCA 1 cut(s) 543
MlyI GAGTC 1 cut(s) 378
MmeI TCCRAC 2 cut(s) 191, 834
Mox20I TGGCCA 1 cut(s) 543
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 543
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 3 cut(s) 227, 439, 810
Msp20I TGGCCA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 970
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 544
NdeII GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 4 cut(s) 8, 548, 717, 809
NlaIV GGNNCC 3 cut(s) 496, 858, 908
NmuCI GTSAC 2 cut(s) 88, 370
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 717
NspV TTCGAA 1 cut(s) 723
OliI CACNNNNGTG 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PfeI GAWTC 5 cut(s) 633, 671, 698, 725, 767
PkrI GCNGC 2 cut(s) 296, 719
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PsiI TTATAA 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 496, 858, 908
PspPI GGNCC 1 cut(s) 856
PspXI VCTCGAGB 1 cut(s) 437
PstI CTGCAG 1 cut(s) 743
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 430, 732
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 3 cut(s) 227, 439, 810
SalI GTCGAC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 295, 718
Sau3AI GATC 7 cut(s) 265, 273, 277, 430, 732, 791, 979
Sau96I GGNCC 1 cut(s) 856
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 2 cut(s) 739, 1003
Sfr274I CTCGAG 1 cut(s) 437
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 1 cut(s) 856
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 3 cut(s) 227, 439, 810
SmlI CTYRAG 2 cut(s) 437, 452
SmoI CTYRAG 2 cut(s) 437, 452
Sse9I AATT 4 cut(s) 51, 418, 621, 801
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 269, 544
TaaI ACNGT 3 cut(s) 353, 476, 1004
TaiI ACGT 2 cut(s) 585, 756
TaqI TCGA 5 cut(s) 276, 438, 579, 723, 762
TaqII GACCGA 2 cut(s) 746, 760
TasI AATT 4 cut(s) 51, 418, 621, 801
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 5 cut(s) 633, 671, 698, 725, 767
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 5 cut(s) 358, 403, 748, 842, 966
TseFI GTSAC 2 cut(s) 88, 370
TseI GCWGC 2 cut(s) 294, 717
Tsp45I GTSAC 2 cut(s) 88, 370
TspDTI ATGAA 5 cut(s) 99, 144, 530, 794, 828
TspRI CASTG 5 cut(s) 358, 403, 748, 842, 966
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 2 cut(s) 418, 621
XceI RCATGY 2 cut(s) 8, 717
XhoI CTCGAG 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 468, 579
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.