Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

30650629 .. 30653701

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGGAAGCAGCAAAGGTAAAACTCAAGGATGGCGATGAGGAATTAGAAGGTGGGATTCTTCCAGGGTTTCGGTTTCATCCAACAGACGAAGAACTTGTTGGGTTTTATCTGCCGGTTAAGGTGGAGAAGAAGAAGATTAGTACTAGAACTTCTACTAGGTTGGATCAACTCATCAGGCAGATTGATATCTACAAGTATGATCCCTGGGATCTTCCAATTAGCACTGTGGGAGACAGAGAGTGCTACTTCTTTTGCAGGAGAGGGAGAAAATACAGAAACAGCGTAAGACCTAACAGAGTCACAGGGTCTGGATTTTGGAAAGCAACCGGCATCGACAAACCCATCTATTCAGCTGAAGAACCTCTCGAGTGCATCGGCCTCAAGAAATCGTTAGTTTACTACCGAGGGAGTGCAGGCAAAGGCACCAAAACTGACTGGATGATGAACGAGTTTCGCCTTCCACCAAATGGGAAAAGTGCCACCAACTTCCTCAATGCCAAAGACAATACAGAAGAAGCTGAAGTTTGGACACTGTGCAGAATATTCAAAAGAATCCCATCTTACAAGAAATACATACCAAATTGGAAGCAGGAAGAAGCCACATCAACCAAGCATAACCCTAACCCTACCGACTTAAATTCAAAAACATGCAGCTTCGAGTCCGAGAACTGCAGTACTCATGATCCATATTCGAGCCTCGAAGATGTCTCTGTAGTCGACATTCAAAAAATTAATGAAAGAAAGCCAGTAGTTGTGGAACAAGTCCATCATGGTGAAACAAATAATCACTGGTTTCATGGATCAGGGCAGTTCGGTTCTCTAGCTGATGGACATCCTCAAGAGGCTAATTCATTCACAACGTCTTATAATGGTTCATCCTTCATGAGAAATGAGCTCTCTTTACGTTCAAGCGAAACCGATGATTTCTTTACAGATGGAAGCTGCTGGGATGAGTTGAGACCAGTAGTTCAATTGGCGAATGGCTGTGGATACATCCACCAAGTTTATGACGACTGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

342

Amino Acids

38.98

Weight (kDa)

5.91

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	22 - 154	8.6e-39	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	720
AclWI	GGATC	5 cut(s)	174, 197, 219, 680, 811
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	2 cut(s)	378, 543
AfaI	GTAC	2 cut(s)	145, 679
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	550, 645, 728, 912, 974
AjnI	CCWGG	2 cut(s)	64, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	6 cut(s)	356, 521, 657, 827, 898, 945
AluI	AGCT	6 cut(s)	356, 521, 657, 827, 898, 945
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	3 cut(s)	228, 715, 955
AlwI	GGATC	5 cut(s)	174, 197, 219, 680, 811
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	11, 654, 945
ApoI	RAATTY	1 cut(s)	640
AseI	ATTAAT	1 cut(s)	735
AsuHPI	GGTGA	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	900
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	3 cut(s)	23, 666, 932
BccI	CCATC	6 cut(s)	26, 353, 568, 777, 824, 932
BciT130I	CCWGG	2 cut(s)	66, 208
BciVI	GTATCC	1 cut(s)	986
BcoDI	GTCTC	3 cut(s)	228, 715, 955
BfaI	CTAG	3 cut(s)	147, 159, 824
BfmI	CTRYAG	2 cut(s)	673, 714
BfuI	GTATCC	1 cut(s)	986
BisI	GCNGC	3 cut(s)	12, 655, 946
BlsI	GCNGC	3 cut(s)	13, 656, 947
BmcAI	AGTACT	2 cut(s)	145, 679
Bme1390I	CCNGG	2 cut(s)	66, 208
BmeT110I	CYCGRG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	66, 208
BmsI	GCATC	2 cut(s)	342, 384
BpuEI	CTTGAG	3 cut(s)	11, 368, 825
BsaBI	GATNNNNATC	2 cut(s)	188, 834
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	4 cut(s)	65, 206, 207, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	2 cut(s)	115, 329
Bse1I	ACTGG	4 cut(s)	443, 749, 797, 965
Bse8I	GATNNNNATC	2 cut(s)	188, 834
BseBI	CCWGG	2 cut(s)	66, 208
BseDI	CCNNGG	4 cut(s)	65, 206, 207, 406
BseGI	GGATG	7 cut(s)	37, 79, 447, 835, 878, 958, 996
BseJI	GATNNNNATC	2 cut(s)	188, 834
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseNI	ACTGG	4 cut(s)	443, 749, 797, 965
BseXI	GCAGC	3 cut(s)	23, 666, 932
BseYI	CCCAGC	1 cut(s)	948
BsgI	GTGCAG	2 cut(s)	435, 559
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	900
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	116, 330
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	3 cut(s)	228, 715, 955
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	955
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp143I	GATC	5 cut(s)	166, 202, 211, 685, 803
BspANI	GGCC	1 cut(s)	381
BspHI	TCATGA	2 cut(s)	682, 885
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	677
BspPI	GGATC	5 cut(s)	174, 197, 219, 680, 811
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	955
BsrFI	RCCGGY	2 cut(s)	115, 329
BsrI	ACTGG	4 cut(s)	443, 749, 797, 965
BssAI	RCCGGY	2 cut(s)	115, 329
BssECI	CCNNGG	4 cut(s)	65, 206, 207, 406
BssMI	GATC	5 cut(s)	166, 202, 211, 685, 803
Bst2UI	CCWGG	2 cut(s)	66, 208
Bst4CI	ACNGT	3 cut(s)	229, 537, 1019
BstC8I	GCNNGC	1 cut(s)	418
BstF5I	GGATG	7 cut(s)	37, 79, 447, 835, 878, 958, 996
BstKTI	GATC	5 cut(s)	169, 205, 214, 688, 806
BstMAI	GTCTC	3 cut(s)	228, 715, 955
BstMBI	GATC	5 cut(s)	166, 202, 211, 685, 803
BstNI	CCWGG	2 cut(s)	66, 208
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	64, 206
BstSFI	CTRYAG	2 cut(s)	673, 714
BstV1I	GCAGC	3 cut(s)	23, 666, 932
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	986
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	7 cut(s)	37, 79, 447, 835, 878, 958, 996
BtsIMutI	CAGTG	3 cut(s)	225, 533, 790
Cac8I	GCNNGC	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	2 cut(s)	682, 885
Cfr10I	RCCGGY	2 cut(s)	115, 329
Csp6I	GTAC	2 cut(s)	144, 678
CviAII	CATG	5 cut(s)	651, 683, 773, 800, 886
CviQI	GTAC	2 cut(s)	144, 678
DpnI	GATC	5 cut(s)	168, 204, 213, 687, 805
DpnII	GATC	5 cut(s)	166, 202, 211, 685, 803
Ecl136II	GAGCTC	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	378, 543
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	898
EcoRII	CCWGG	2 cut(s)	64, 206
EcoRV	GATATC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	900
FaeI	CATG	5 cut(s)	654, 686, 776, 803, 889
FatI	CATG	5 cut(s)	650, 682, 772, 799, 885
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	3 cut(s)	12, 655, 946
FokI	GGATG	7 cut(s)	44, 66, 454, 822, 865, 965, 983
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	3 cut(s)	12, 655, 946
FspBI	CTAG	3 cut(s)	147, 159, 824
GluI	GCNGC	3 cut(s)	12, 655, 946
GsaI	CCCAGC	1 cut(s)	952
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	116, 330
Hin1II	CATG	5 cut(s)	654, 686, 776, 803, 889
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	58, 300, 555, 662
HpaII	CCGG	2 cut(s)	116, 330
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	2 cut(s)	400, 721
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	6 cut(s)	312, 368, 385, 683, 842, 886
Hpy8I	GTNNAC	2 cut(s)	400, 721
HpyAV	CCTTC	3 cut(s)	44, 470, 892
HpyCH4III	ACNGT	3 cut(s)	229, 537, 1019
HpyCH4IV	ACGT	2 cut(s)	863, 907
HpyCH4V	TGCA	6 cut(s)	258, 375, 416, 540, 654, 675
HpySE526I	ACGT	2 cut(s)	863, 907
Hsp92II	CATG	5 cut(s)	654, 686, 776, 803, 889
Kzo9I	GATC	5 cut(s)	166, 202, 211, 685, 803
Lsp1109I	GCAGC	3 cut(s)	23, 666, 932
LweI	GCATC	2 cut(s)	342, 384
MaeI	CTAG	3 cut(s)	147, 159, 824
MaeII	ACGT	2 cut(s)	863, 907
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	168, 204, 213, 687, 805
MboI	GATC	5 cut(s)	166, 202, 211, 685, 803
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	7 cut(s)	44, 219, 583, 640, 732, 850, 974
MlyI	GAGTC	2 cut(s)	309, 671
MmeI	TCCRAC	2 cut(s)	107, 144
MnlI	CCTC	9 cut(s)	34, 257, 375, 392, 401, 503, 710, 838, 849
MseI	TTAA	3 cut(s)	120, 638, 735
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	116, 330
MspR9I	CCNGG	2 cut(s)	66, 208
MunI	CAATTG	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	66, 208
NdeII	GATC	5 cut(s)	166, 202, 211, 685, 803
NlaIII	CATG	5 cut(s)	654, 686, 776, 803, 889
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	2 cut(s)	682, 885
PasI	CCCWGGG	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	58, 555
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	13, 656, 947
PleI	GAGTC	2 cut(s)	308, 670
PpsI	GAGTC	2 cut(s)	308, 670
PshBI	ATTAAT	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	870
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	64, 206
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	2 cut(s)	64, 206
PspN4I	GGNNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	145, 679
RsaNI	GTAC	2 cut(s)	144, 678
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	900
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	120, 638, 735
SatI	GCNGC	3 cut(s)	12, 655, 946
Sau3AI	GATC	5 cut(s)	166, 202, 211, 685, 803
ScaI	AGTACT	2 cut(s)	145, 679
SchI	GAGTC	2 cut(s)	309, 671
ScrFI	CCNGG	2 cut(s)	66, 208
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	2 cut(s)	342, 384
SfcI	CTRYAG	2 cut(s)	673, 714
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	4 cut(s)	26, 368, 383, 840
SmoI	CTYRAG	4 cut(s)	26, 368, 383, 840
Sse9I	AATT	7 cut(s)	44, 219, 583, 640, 732, 850, 974
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	147, 159, 824
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	64, 206
TaaI	ACNGT	3 cut(s)	229, 537, 1019
TaiI	ACGT	2 cut(s)	866, 910
TaqI	TCGA	6 cut(s)	336, 369, 660, 695, 702, 720
TasI	AATT	7 cut(s)	44, 219, 583, 640, 732, 850, 974
TatI	WGTACW	2 cut(s)	143, 677
TfiI	GAWTC	2 cut(s)	58, 555
Tru1I	TTAA	3 cut(s)	120, 638, 735
Tru9I	TTAA	3 cut(s)	120, 638, 735
TscAI	CASTG	3 cut(s)	232, 540, 797
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	11, 654, 945
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	7 cut(s)	68, 461, 753, 788, 843, 867, 874
TspRI	CASTG	3 cut(s)	232, 540, 797
Van91I	CCANNNNNTGG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	654
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	3 cut(s)	147, 159, 824
ZrmI	AGTACT	2 cut(s)	145, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.