MD10G1238200.v1.1

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0002908
Physical Location & Seq
Forward (+)
33437479 .. 33439002
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1238200.v1.1.491

Sequence Viewer

Length: 894 bp
ATGATGAGTACTTGTGATTCAAATAACATGGTTCATAAGGATCAAGATGCAAATATGCTTCCTGGGTATCGCTTTCATCCTACTGATGAAGAGCTTGTGAGGTTTTACCTTCGTAGGAAGGTGGAGAACAAACCCATTCGTCTTGACCTAATCAAGCATATCGATATTTACAAATATGACCCTTGGGATCTTCCAACTAGTGGTAGTGTTGGGGACAAGGAGTGGTACTTCTTTTGCAGAAGGGGACAGAAATACAAAAATAGCATAAGACCTAATAGGGTGACAAAGTCTGGGTTTTGGAAAGCCACTGGTATTGATAAACCTGTATATTCGGATGGAGACTTTCGCAGCTGCATTGGCTTGAAGAAATCCCTAGTTTACTATAGAGGGAGTGCTGGAAAAGGCACCAAAACCGATTGGATGATGCACGAGTTCCGTCTTTCAGCTAATTCAAGCAATAATACCTCTGACATCAAAAATAGTACTCAAGAAGCTGAAGTTTGGACACTTTGCCGGATTATGAAGCGCAATAATACTTCGAATGGAAAGTATACATCAAATTGGCATAAGACAACCTTGAATCCCAAACAAAGTGTGGCTGACTCGAGTTCTAAAACATGCAGTTCTGAGTCAGATACAACTTTTGGTGCTTTGGCTGCTAAGGATCAATTTGAGAGGAGTCCTCTTTTCCGTAATGATCATATGTATGAAGGGAACCAGTTCTTCCCAGGCCAGCTGAGCTTGAAAGACGAAGTAATCGATCCAGACTCTTACATAAGCTTTCCGAAATCTCCAAATGAATATGAGATGTTAACATCGAACGGAAACTGGGATGAGCTCAGACCAATGGTCGACTGTGTTCTAAATTCATCACTTCTATTTGGTTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

298

Amino Acids

34.26

Weight (kDa)

8.58

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 21 - 147 8.4e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 2 cut(s) 551, 852
AclWI GGATC 4 cut(s) 48, 195, 672, 755
AcsI RAATTY 1 cut(s) 865
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 3 cut(s) 10, 227, 484
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 5 cut(s) 21, 364, 453, 580, 745
AhdI GACNNNNNGTC 1 cut(s) 848
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 2 cut(s) 61, 727
AluBI AGCT 9 cut(s) 94, 351, 446, 494, 736, 741, 780, 838, 891
AluI AGCT 9 cut(s) 94, 351, 446, 494, 736, 741, 780, 838, 891
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 4 cut(s) 48, 195, 672, 755
Ama87I CYCGRG 1 cut(s) 604
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 3 cut(s) 348, 351, 656
ApoI RAATTY 1 cut(s) 865
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 528
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 604
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 840
BauI CACGAG 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 3 cut(s) 338, 360, 643
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 63, 729
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 333
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 3 cut(s) 198, 374, 892
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 3 cut(s) 349, 352, 657
BlpI GCTNAGC 1 cut(s) 737
BlsI GCNGC 3 cut(s) 350, 353, 658
BmcAI AGTACT 2 cut(s) 10, 484
Bme1390I CCNGG 2 cut(s) 63, 729
BmeRI GACNNNNNGTC 1 cut(s) 848
BmeT110I CYCGRG 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 406, 716
BmrFI CCNGG 2 cut(s) 63, 729
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 37, 414
BmuI ACTGGG 1 cut(s) 838
BplI GAGNNNNNCTC 2 cut(s) 667, 699
Bpu10I CCTNAGC 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 471
Bsa29I ATCGAT 2 cut(s) 162, 759
BsaJI CCNNGG 3 cut(s) 62, 182, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 313, 718, 833
BseBI CCWGG 2 cut(s) 63, 729
BseCI ATCGAT 2 cut(s) 162, 759
BseDI CCNNGG 3 cut(s) 62, 182, 727
BseGI GGATG 4 cut(s) 76, 340, 426, 838
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 3 cut(s) 618, 728, 853
BseNI ACTGG 3 cut(s) 313, 718, 833
BseRI GAGGAG 1 cut(s) 691
BseXI GCAGC 3 cut(s) 338, 360, 643
BshFI GGCC 1 cut(s) 732
BshNI GGYRCC 1 cut(s) 404
BshVI ATCGAT 2 cut(s) 162, 759
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 227, 258
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 227, 258
BsnI GGCC 1 cut(s) 732
BsoBI CYCGRG 1 cut(s) 604
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 840
Bsp143I GATC 5 cut(s) 40, 187, 664, 697, 760
Bsp1720I GCTNAGC 1 cut(s) 737
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 3 cut(s) 619, 729, 852
BspDI ATCGAT 2 cut(s) 162, 759
BspLI GGNNCC 2 cut(s) 406, 716
BspPI GGATC 4 cut(s) 48, 195, 672, 755
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 3 cut(s) 313, 718, 833
BssECI CCNNGG 3 cut(s) 62, 182, 727
BssMI GATC 5 cut(s) 40, 187, 664, 697, 760
BssNAI GTATAC 1 cut(s) 552
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 182
Bst1107I GTATAC 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 63, 729
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 734
BstDEI CTNAG 4 cut(s) 627, 660, 737, 839
BstF5I GGATG 4 cut(s) 76, 340, 426, 838
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 5 cut(s) 43, 190, 667, 700, 763
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 5 cut(s) 40, 187, 664, 697, 760
BstMWI GCNNNNNNNGC 3 cut(s) 357, 656, 738
BstNI CCWGG 2 cut(s) 63, 729
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 61, 727
BstSFI CTRYAG 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 338, 360, 643
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 552
Bsu15I ATCGAT 2 cut(s) 162, 759
BsuRI GGCC 1 cut(s) 732
BsuTUI ATCGAT 2 cut(s) 162, 759
BtsCI GGATG 4 cut(s) 76, 340, 426, 838
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 734
CfoI GCGC 1 cut(s) 528
ClaI ATCGAT 2 cut(s) 162, 759
Csp6I GTAC 3 cut(s) 9, 226, 483
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 2 cut(s) 28, 618
CviQI GTAC 3 cut(s) 9, 226, 483
DdeI CTNAG 4 cut(s) 627, 660, 737, 839
DpnI GATC 5 cut(s) 42, 189, 666, 699, 762
DpnII GATC 5 cut(s) 40, 187, 664, 697, 760
DriI GACNNNNNGTC 1 cut(s) 848
Eam1104I CTCTTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 840
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 838
EcoRII CCWGG 2 cut(s) 61, 727
EcoT14I CCWWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 31, 621
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 227, 258
FatI CATG 2 cut(s) 27, 617
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 2 cut(s) 551, 852
Fnu4HI GCNGC 3 cut(s) 349, 352, 657
FokI GGATG 4 cut(s) 63, 347, 433, 845
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 3 cut(s) 349, 352, 657
FspBI CTAG 3 cut(s) 198, 374, 892
GlaI GCGC 1 cut(s) 527
GluI GCNGC 3 cut(s) 349, 352, 657
HaeIII GGCC 1 cut(s) 732
HapII CCGG 1 cut(s) 514
HhaI GCGC 1 cut(s) 528
Hin1II CATG 2 cut(s) 31, 621
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 2 cut(s) 813, 853
HindII GTYRAC 2 cut(s) 813, 853
HindIII AAGCTT 1 cut(s) 778
HinfI GANTC 6 cut(s) 17, 580, 602, 629, 679, 767
HpaI GTTAAC 1 cut(s) 813
HpaII CCGG 1 cut(s) 514
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 4 cut(s) 379, 552, 813, 853
Hpy188I TCNGA 6 cut(s) 334, 469, 628, 634, 786, 842
Hpy188III TCNNGA 4 cut(s) 44, 143, 488, 764
Hpy8I GTNNAC 4 cut(s) 379, 552, 813, 853
HpyAV CCTTC 4 cut(s) 112, 119, 234, 704
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4V TGCA 5 cut(s) 50, 237, 354, 427, 621
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 656, 738
HpyF3I CTNAG 4 cut(s) 627, 660, 737, 839
Hsp92II CATG 2 cut(s) 31, 621
HspAI GCGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 813
Kzo9I GATC 5 cut(s) 40, 187, 664, 697, 760
LguI GCTCTTC 1 cut(s) 84
Lsp1109I GCAGC 3 cut(s) 338, 360, 643
LweI GCATC 2 cut(s) 37, 414
MaeI CTAG 3 cut(s) 198, 374, 892
MaeIII GTNAC 1 cut(s) 280
MalI GATC 5 cut(s) 42, 189, 666, 699, 762
MboI GATC 5 cut(s) 40, 187, 664, 697, 760
MboII GAAGA 4 cut(s) 101, 182, 376, 715
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 840
MluCI AATT 4 cut(s) 448, 559, 668, 865
MlyI GAGTC 4 cut(s) 596, 638, 688, 761
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 5 cut(s) 93, 380, 475, 669, 693
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 1 cut(s) 812
MslI CAYNNNNRTG 1 cut(s) 705
MspA1I CMGCKG 2 cut(s) 351, 736
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 2 cut(s) 63, 729
MvaI CCWGG 2 cut(s) 63, 729
MwoI GCNNNNNNNGC 3 cut(s) 357, 656, 738
NdeI CATATG 1 cut(s) 702
NdeII GATC 5 cut(s) 40, 187, 664, 697, 760
NlaIII CATG 2 cut(s) 31, 621
NlaIV GGNNCC 2 cut(s) 406, 716
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 1 cut(s) 621
NspV TTCGAA 1 cut(s) 539
PaeR7I CTCGAG 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 17, 580
PflFI GACNNNGTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 3 cut(s) 350, 353, 658
PleI GAGTC 4 cut(s) 596, 637, 687, 761
PpsI GAGTC 4 cut(s) 596, 637, 687, 761
Psp124BI GAGCTC 1 cut(s) 840
Psp6I CCWGG 2 cut(s) 61, 727
PspGI CCWGG 2 cut(s) 61, 727
PspN4I GGNNCC 2 cut(s) 406, 716
PspXI VCTCGAGB 1 cut(s) 604
PsuI RGATCY 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 2 cut(s) 351, 736
RsaI GTAC 3 cut(s) 10, 227, 484
RsaNI GTAC 3 cut(s) 9, 226, 483
RseI CAYNNNNRTG 1 cut(s) 705
SacI GAGCTC 1 cut(s) 840
SalI GTCGAC 1 cut(s) 851
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 3 cut(s) 349, 352, 657
Sau3AI GATC 5 cut(s) 40, 187, 664, 697, 760
ScaI AGTACT 2 cut(s) 10, 484
SchI GAGTC 4 cut(s) 596, 638, 688, 761
ScrFI CCNGG 2 cut(s) 63, 729
SduI GDGCHC 1 cut(s) 840
SfaNI GCATC 2 cut(s) 37, 414
SfcI CTRYAG 1 cut(s) 382
Sfr274I CTCGAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 539
SlaI CTCGAG 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 486, 604
SmoI CTYRAG 2 cut(s) 486, 604
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 4 cut(s) 448, 559, 668, 865
SspMI CTAG 3 cut(s) 198, 374, 892
SstI GAGCTC 1 cut(s) 840
StyD4I CCNGG 2 cut(s) 61, 727
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 857
TaqI TCGA 6 cut(s) 162, 539, 605, 759, 818, 852
TasI AATT 4 cut(s) 448, 559, 668, 865
TatI WGTACW 2 cut(s) 8, 482
TfiI GAWTC 2 cut(s) 17, 580
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 348, 351, 656
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 7 cut(s) 23, 65, 102, 536, 723, 813, 858
TspGWI ACGGA 3 cut(s) 425, 680, 837
TspRI CASTG 1 cut(s) 313
Tth111I GACNNNGTC 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 865
XceI RCATGY 1 cut(s) 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 604
XmiI GTMKAC 2 cut(s) 551, 852
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 3 cut(s) 198, 374, 892
ZrmI AGTACT 2 cut(s) 10, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.