Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

17165004 .. 17165431

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAGGTGACAAAGGTTAAATTCAAGGATGATGATGATGAGGAATTAGCAGGTGGGATGCTTCCAGGGTTTCGGTTTCATCCGACCGATGAAGAACTTGTTGGGTTTTATCTGCCGGTTAAGGTGGAGAAGAAAAAGATTAGTACTAGAACTTCTACTAGATTGGATCAACTCATCAGACAGATTGATATCTACAAATATGATCCCTGGGATCTTCCAAAGTCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

76

Amino Acids

8.91

Weight (kDa)

5.32

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	22 - 75	5.1e-13	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AclWI	GGATC	3 cut(s)	174, 197, 219
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	64, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AlwI	GGATC	3 cut(s)	174, 197, 219
ApoI	RAATTY	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
BciT130I	CCWGG	2 cut(s)	66, 208
BfaI	CTAG	2 cut(s)	147, 159
BfuAI	ACCTGC	1 cut(s)	41
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	66, 208
BmrFI	CCNGG	2 cut(s)	66, 208
BmsI	GCATC	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	65, 206, 207
Bse118I	RCCGGY	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	66, 208
BseDI	CCNNGG	3 cut(s)	65, 206, 207
BseGI	GGATG	3 cut(s)	34, 63, 79
BseJI	GATNNNNATC	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	166, 202, 211
BspHI	TCATGA	1 cut(s)	227
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	174, 197, 219
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	65, 206, 207
BssMI	GATC	3 cut(s)	166, 202, 211
Bst2UI	CCWGG	2 cut(s)	66, 208
BstF5I	GGATG	3 cut(s)	34, 63, 79
BstKTI	GATC	3 cut(s)	169, 205, 214
BstMBI	GATC	3 cut(s)	166, 202, 211
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	2 cut(s)	66, 208
BstSCI	CCNGG	2 cut(s)	64, 206
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	34, 63, 79
BveI	ACCTGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	228
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	3 cut(s)	168, 204, 213
DpnII	GATC	3 cut(s)	166, 202, 211
Eco32I	GATATC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	64, 206
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	1 cut(s)	231
FaiI	YATR	2 cut(s)	201, 229
FatI	CATG	1 cut(s)	227
FokI	GGATG	3 cut(s)	41, 66, 70
FspBI	CTAG	2 cut(s)	147, 159
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	1 cut(s)	231
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	84, 179
Hpy188III	TCNNGA	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	166, 202, 211
LpnPI	CCDG	6 cut(s)	36, 51, 78, 129, 193, 220
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	147, 159
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	168, 204, 213
MboI	GATC	3 cut(s)	166, 202, 211
MboII	GAAGA	3 cut(s)	104, 142, 206
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	20, 44
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	2 cut(s)	18, 120
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	66, 208
MvaI	CCWGG	2 cut(s)	66, 208
NdeII	GATC	3 cut(s)	166, 202, 211
NlaIII	CATG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	41
PasI	CCCWGGG	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	64, 206
PspGI	CCWGG	2 cut(s)	64, 206
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	18, 120
Sau3AI	GATC	3 cut(s)	166, 202, 211
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	66, 208
SetI	ASST	4 cut(s)	9, 18, 55, 126
SfaNI	GCATC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	20, 44
SspMI	CTAG	2 cut(s)	147, 159
StyD4I	CCNGG	2 cut(s)	64, 206
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	20, 44
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	18, 120
Tru9I	TTAA	2 cut(s)	18, 120
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	68, 105
XapI	RAATTY	1 cut(s)	20
XspI	CTAG	2 cut(s)	147, 159
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.