Rh5DG140000

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002908
Physical Location & Seq
Reverse (-)
14085779 .. 14087383
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG140000.1

Sequence Viewer

Length: 963 bp
ATGATCAGAAGGCACCAAGAGGAAGAAGCTAAACAGAAAATGGAAGTGCAGAAGATGATGATGAGGGATTCGATTAACAACACTAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTCAGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAATATGATCCCTGGGATCTTCCAAAAGCTAGTGGTTTAGTTGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAAGCAACCGGCATTGACAAACCTGTATATTCGGTTGAAGGAGAATTTCACACTTGCATTGGCTTAAAGAAATCCCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGATTGGATGATGCACGAATTTCGTCTTCCAGCTACTAATGCAAGCACTGGTGCTGATTCTAATATCAATGACATTACTCAAGAAGCTGAAGTTTGGACCCTATGCAGAATTTTGAAACGAAACAATTCTTCTAGAAAGTATGAAACAAATTGGCAGAAGACAACTTCCAAGCAAAGTGCAGCTGATTCAAGTTCGAAAACATGCAGTTCTGAGTCGGATGGAAGTTTTGGTGCTCCGGCTGCTCAGAAGAATGATCAACTTGAAAGGATCAGTACTCCTAATTTTAACAATGATCATCTGTGCGAAGGGAACAATCATATCTCAGCAGGCCAGCTGACCTTAAAAGATGAAGTAGTTGATCCAATGGTGAACTCATACATAAACTTCTGGAATCTAAATGAATATGAGATGTTAAGATCAGATAATCCCAACTGGGATGAGCTGAGTCCAATGATCGACTGCGTTCTAAATCCCTCCCCGCTATATCGATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

320

Amino Acids

37.1

Weight (kDa)

8.37

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 36 - 164 2.7e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 12, 455
AccI GTMKAC 1 cut(s) 429
AciI CCGC 1 cut(s) 944
AclWI GGATC 4 cut(s) 218, 240, 740, 818
AcsI RAATTY 3 cut(s) 392, 482, 573
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 3 cut(s) 275, 457, 739
AgsI TTSAA 4 cut(s) 386, 580, 654, 728
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 8 cut(s) 29, 193, 245, 497, 551, 647, 799, 907
AluI AGCT 8 cut(s) 29, 193, 245, 497, 551, 647, 799, 907
Alw21I GWGCWC 2 cut(s) 195, 700
AlwI GGATC 4 cut(s) 218, 240, 740, 818
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 2 cut(s) 644, 704
ApoI RAATTY 3 cut(s) 392, 482, 573
Asp700I GAANNNNTTC 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 844
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 561
AxyI CCTNAGG 1 cut(s) 155
BanI GGYRCC 2 cut(s) 12, 455
BanII GRGCYC 1 cut(s) 195
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbsI GAAGAC 2 cut(s) 482, 629
Bbv12I GWGCWC 2 cut(s) 195, 700
BbvI GCAGC 2 cut(s) 656, 691
BccI CCATC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 3 cut(s) 3, 718, 757
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 3 cut(s) 246, 425, 597
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 2 cut(s) 645, 705
BlsI GCNGC 2 cut(s) 646, 706
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 108, 229
Bme18I GGWCC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 3 cut(s) 14, 457, 563
BmrFI CCNGG 2 cut(s) 108, 229
BmrI ACTGGG 1 cut(s) 907
BmsI GCATC 2 cut(s) 82, 465
BmuI ACTGGG 1 cut(s) 907
BpiI GAAGAC 2 cut(s) 482, 629
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 209, 528
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 952
BsaJI CCNNGG 3 cut(s) 107, 227, 228
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 517, 902
Bse21I CCTNAGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 3 cut(s) 107, 227, 228
BseGI GGATG 5 cut(s) 94, 121, 477, 688, 907
BseMII CTCAG 5 cut(s) 169, 666, 722, 801, 899
BseNI ACTGG 2 cut(s) 517, 902
BseXI GCAGC 2 cut(s) 656, 691
BsgI GTGCAG 2 cut(s) 68, 663
Bsh1285I CGRYCG 1 cut(s) 956
BshFI GGCC 1 cut(s) 795
BshNI GGYRCC 2 cut(s) 12, 455
BshVI ATCGAT 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 956
BsiHKAI GWGCWC 2 cut(s) 195, 700
BsiSI CCGG 3 cut(s) 107, 357, 701
BsnI GGCC 1 cut(s) 795
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 195, 700
BspACI CCGC 1 cut(s) 944
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 5 cut(s) 168, 667, 721, 800, 900
BspDI ATCGAT 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 14, 457, 563
BspPI GGATC 4 cut(s) 218, 240, 740, 818
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 2 cut(s) 12, 455
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 517, 902
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 107, 227, 228
BssNAI GTATAC 1 cut(s) 430
Bst1107I GTATAC 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 508, 793, 797
BstDEI CTNAG 6 cut(s) 84, 155, 675, 708, 787, 908
BstF5I GGATG 5 cut(s) 94, 121, 477, 688, 907
BstMCI CGRYCG 1 cut(s) 956
BstMWI GCNNNNNNNGC 2 cut(s) 503, 704
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 106, 227
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 656, 691
BstV2I GAAGAC 2 cut(s) 482, 629
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 795
BsuTUI ATCGAT 1 cut(s) 952
BtsCI GGATG 5 cut(s) 94, 121, 477, 688, 907
BtsIMutI CAGTG 2 cut(s) 126, 510
Cac8I GCNNGC 3 cut(s) 508, 793, 797
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 561
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 3 cut(s) 274, 456, 738
CviAII CATG 1 cut(s) 666
CviQI GTAC 3 cut(s) 274, 456, 738
DdeI CTNAG 6 cut(s) 84, 155, 675, 708, 787, 908
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 573
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 669
FatI CATG 1 cut(s) 665
FauI CCCGC 1 cut(s) 951
FbaI TGATCA 3 cut(s) 3, 718, 757
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 645, 705
FokI GGATG 5 cut(s) 101, 108, 484, 695, 914
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 645, 705
FspBI CTAG 3 cut(s) 246, 425, 597
GluI GCNGC 2 cut(s) 645, 705
HaeIII GGCC 1 cut(s) 795
HapII CCGG 3 cut(s) 107, 357, 701
Hin1II CATG 1 cut(s) 669
HinfI GANTC 6 cut(s) 68, 521, 650, 677, 856, 910
HpaII CCGG 3 cut(s) 107, 357, 701
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 2 cut(s) 430, 835
Hpy188I TCNGA 5 cut(s) 8, 676, 682, 711, 886
Hpy188III TCNNGA 5 cut(s) 157, 188, 545, 597, 853
Hpy8I GTNNAC 2 cut(s) 430, 835
HpyAV CCTTC 6 cut(s) 3, 157, 259, 282, 380, 764
HpyCH4V TGCA 9 cut(s) 49, 95, 285, 405, 478, 506, 570, 644, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 704
HpyF3I CTNAG 6 cut(s) 84, 155, 675, 708, 787, 908
Hsp92II CATG 1 cut(s) 669
KpnI GGTACC 1 cut(s) 459
Ksp22I TGATCA 3 cut(s) 3, 718, 757
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 2 cut(s) 656, 691
LweI GCATC 2 cut(s) 82, 465
MaeI CTAG 3 cut(s) 246, 425, 597
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 9 cut(s) 35, 64, 95, 146, 227, 482, 585, 634, 724
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 195, 700
MluCI AATT 6 cut(s) 392, 482, 573, 589, 613, 745
MlyI GAGTC 2 cut(s) 686, 919
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 7 cut(s) 13, 57, 138, 153, 164, 431, 949
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 5 cut(s) 75, 413, 750, 806, 878
MspA1I CMGCKG 2 cut(s) 647, 799
MspI CCGG 3 cut(s) 107, 357, 701
MspR9I CCNGG 2 cut(s) 108, 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 503, 704
NciI CCSGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 669
NlaIV GGNNCC 3 cut(s) 14, 457, 563
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 669
NspV TTCGAA 1 cut(s) 659
PasI CCCWGGG 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 4 cut(s) 68, 521, 650, 856
PkrI GCNGC 2 cut(s) 646, 706
Ple19I CGATCG 1 cut(s) 956
PleI GAGTC 2 cut(s) 685, 918
PpsI GAGTC 2 cut(s) 685, 918
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 14, 457, 563
PspPI GGNCC 1 cut(s) 561
PsuI RGATCY 1 cut(s) 232
PvuI CGATCG 1 cut(s) 956
PvuII CAGCTG 2 cut(s) 647, 799
RsaI GTAC 3 cut(s) 275, 457, 739
RsaNI GTAC 3 cut(s) 274, 456, 738
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 5 cut(s) 75, 413, 750, 806, 878
SatI GCNGC 2 cut(s) 645, 705
Sau96I GGNCC 1 cut(s) 561
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 2 cut(s) 686, 919
ScrFI CCNGG 2 cut(s) 108, 229
SduI GDGCHC 2 cut(s) 195, 700
SfaNI GCATC 2 cut(s) 82, 465
SfcI CTRYAG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 188, 543
SmoI CTYRAG 2 cut(s) 188, 543
Sse9I AATT 6 cut(s) 392, 482, 573, 589, 613, 745
SsiI CCGC 1 cut(s) 944
SspMI CTAG 3 cut(s) 246, 425, 597
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 106, 227
TaqI TCGA 4 cut(s) 71, 659, 921, 952
TasI AATT 6 cut(s) 392, 482, 573, 589, 613, 745
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 4 cut(s) 68, 521, 650, 856
Tru1I TTAA 5 cut(s) 75, 413, 750, 806, 878
Tru9I TTAA 5 cut(s) 75, 413, 750, 806, 878
TscAI CASTG 2 cut(s) 133, 517
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 644, 704
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 110, 147, 621, 828, 879
TspRI CASTG 2 cut(s) 133, 517
VpaK11BI GGWCC 1 cut(s) 561
XapI RAATTY 3 cut(s) 392, 482, 573
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 3 cut(s) 246, 425, 597
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.