Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

22956038 .. 22957432

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGTGGTAAATCAGAAGATGATGAGTACTTGTGATTCAAATAACATGATTCATAAGGATCAAGATGCAAATATGCTTCCTGGGTTTCGCTTTCATCCTACTGATGAAGAGCTTGTGAGGTTTTACCTTCGTAGGAAGGTGGAGAACAAACCCATTCGTTTTGACCTAATCAAGCATATCGATATTTACAAATATGACCCTTGGGATCTTCCAAAAGCTAGCGGTAGTGTTGGGGACAAGGAGTGGTACTTCTTTTGCAGAAGGGGACAGAAATACAAAAATAGCATAAGACCTAATAGGGTGACAAAGTCTGGGTTTTGGAAAGCCACTGGTATTGATAAACCTGTATATTCGGTTGGAGACTTTCACAGCTGCATTGGCTTGAAGAAATCCCTAGTTTACTACAGAGGGAGCGCTGGAAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGTCTTTCAGCTAATTCAAGCAATGATACCTCTGACATCAAAAACAGTACTCAAGAAGCTGAAGTTTGGACACTTTGCCGGATTATGAAGCGCAATAATACTTCGAGTGGAAAGTATACATCAAATTGGCATAAGACAACCTTGAATCCCAAACAAAGTGTGGCTGACTCGAGTTCTAAAACATGCAGTTCTGAGTCAGATGCAACTTTTGGTGCTTTGCCTGCTGAGGATCAATCTGAGAGGAGTCCCCTTGTCCATAATGATCATATTTATGAAGGGAACCAATTCTTCCGAGACCAGCTGAGCTTGAAAGACGAAGTAATCGATCCATACTCTTACATAAGCTTTCCGAATAGTCCAAATGAATATGAGATGTTAACATCGAACGGAAACTGGGATGAGCTCAGACCAATGGTCGACTGTGTTCTAAATCCATCATTTCTATTTAGTTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

306

Amino Acids

35.23

Weight (kDa)

7.61

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	2 cut(s)	575, 876
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	4 cut(s)	69, 216, 696, 779
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	31, 251, 508
AfeI	AGCGCT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	42, 388, 477, 604, 769
AhdI	GACNNNNNGTC	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	2 cut(s)	357, 747
AlwI	GGATC	4 cut(s)	69, 216, 696, 779
Ama87I	CYCGRG	1 cut(s)	628
Aor51HI	AGCGCT	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	419, 552
AsuHPI	GGTGA	1 cut(s)	316
AsuNHI	GCTAGC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	864
BauI	CACGAG	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	864
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	1 cut(s)	901
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	357, 747
BfaI	CTAG	3 cut(s)	222, 398, 916
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	1 cut(s)	376
BlpI	GCTNAGC	1 cut(s)	761
BlsI	GCNGC	1 cut(s)	377
BmcAI	AGTACT	2 cut(s)	31, 508
Bme1390I	CCNGG	1 cut(s)	84
BmeRI	GACNNNNNGTC	1 cut(s)	872
BmeT110I	CYCGRG	1 cut(s)	628
BmiI	GGNNCC	2 cut(s)	430, 740
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	3 cut(s)	58, 438, 649
BmtI	GCTAGC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	862
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	1 cut(s)	495
Bsa29I	ATCGAT	2 cut(s)	183, 783
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	83, 203
Bse1I	ACTGG	2 cut(s)	337, 857
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	2 cut(s)	183, 783
BseDI	CCNNGG	2 cut(s)	83, 203
BseGI	GGATG	3 cut(s)	97, 450, 862
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	5 cut(s)	642, 675, 687, 752, 877
BseNI	ACTGG	2 cut(s)	337, 857
BseRI	GAGGAG	1 cut(s)	715
BseXI	GCAGC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	428
BshVI	ATCGAT	2 cut(s)	183, 783
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	538
BslFI	GGGAC	3 cut(s)	251, 282, 690
BsmAI	GTCTC	2 cut(s)	357, 747
BsmFI	GGGAC	3 cut(s)	251, 282, 690
Bso31I	GGTCTC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	5 cut(s)	61, 208, 688, 721, 784
Bsp1720I	GCTNAGC	1 cut(s)	761
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	5 cut(s)	643, 676, 688, 753, 876
BspDI	ATCGAT	2 cut(s)	183, 783
BspLI	GGNNCC	2 cut(s)	430, 740
BspOI	GCTAGC	1 cut(s)	225
BspPI	GGATC	4 cut(s)	69, 216, 696, 779
BspQI	GCTCTTC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	337, 857
BssECI	CCNNGG	2 cut(s)	83, 203
BssMI	GATC	5 cut(s)	61, 208, 688, 721, 784
BssNAI	GTATAC	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	506, 881
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	223, 681
BstDEI	CTNAG	5 cut(s)	651, 684, 696, 761, 863
BstF5I	GGATG	3 cut(s)	97, 450, 862
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	2 cut(s)	419, 552
BstKTI	GATC	5 cut(s)	64, 211, 691, 724, 787
BstMAI	GTCTC	2 cut(s)	357, 747
BstMBI	GATC	5 cut(s)	61, 208, 688, 721, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 680
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZ17I	GTATAC	1 cut(s)	576
Bsu15I	ATCGAT	2 cut(s)	183, 783
BsuTUI	ATCGAT	2 cut(s)	183, 783
BtsCI	GGATG	3 cut(s)	97, 450, 862
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	223, 681
CfoI	GCGC	2 cut(s)	419, 552
ClaI	ATCGAT	2 cut(s)	183, 783
Csp6I	GTAC	3 cut(s)	30, 250, 507
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	2 cut(s)	49, 642
CviQI	GTAC	3 cut(s)	30, 250, 507
DdeI	CTNAG	5 cut(s)	651, 684, 696, 761, 863
DpnI	GATC	5 cut(s)	63, 210, 690, 723, 786
DpnII	GATC	5 cut(s)	61, 208, 688, 721, 784
DriI	GACNNNNNGTC	1 cut(s)	872
Eam1104I	CTCTTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	747
Eco47III	AGCGCT	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	862
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	2 cut(s)	52, 645
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	3 cut(s)	251, 282, 690
FatI	CATG	2 cut(s)	48, 641
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	2 cut(s)	575, 876
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	3 cut(s)	84, 457, 869
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	3 cut(s)	222, 398, 916
GlaI	GCGC	2 cut(s)	418, 551
GluI	GCNGC	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	420
HapII	CCGG	1 cut(s)	538
HhaI	GCGC	2 cut(s)	419, 552
Hin1II	CATG	2 cut(s)	52, 645
Hin6I	GCGC	2 cut(s)	417, 550
HinP1I	GCGC	2 cut(s)	417, 550
HincII	GTYRAC	2 cut(s)	837, 877
HindII	GTYRAC	2 cut(s)	837, 877
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	6 cut(s)	38, 52, 604, 626, 653, 703
HpaI	GTTAAC	1 cut(s)	837
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	4 cut(s)	403, 576, 837, 877
Hpy188I	TCNGA	8 cut(s)	18, 493, 652, 658, 697, 752, 810, 866
Hpy188III	TCNNGA	2 cut(s)	65, 512
Hpy8I	GTNNAC	4 cut(s)	403, 576, 837, 877
HpyAV	CCTTC	4 cut(s)	133, 140, 258, 728
HpyCH4III	ACNGT	2 cut(s)	506, 881
HpyCH4V	TGCA	6 cut(s)	71, 261, 378, 451, 645, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 680
HpyF3I	CTNAG	5 cut(s)	651, 684, 696, 761, 863
Hsp92II	CATG	2 cut(s)	52, 645
HspAI	GCGC	2 cut(s)	417, 550
Ksp22I	TGATCA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	837
Kzo9I	GATC	5 cut(s)	61, 208, 688, 721, 784
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	3 cut(s)	58, 438, 649
MaeI	CTAG	3 cut(s)	222, 398, 916
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	5 cut(s)	63, 210, 690, 723, 786
MboI	GATC	5 cut(s)	61, 208, 688, 721, 784
MboII	GAAGA	5 cut(s)	31, 122, 203, 400, 739
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	3 cut(s)	472, 583, 743
MlyI	GAGTC	3 cut(s)	620, 662, 712
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	114, 404, 499, 679, 693
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	375, 760
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	381, 680
NdeII	GATC	5 cut(s)	61, 208, 688, 721, 784
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	52, 645
NlaIV	GGNNCC	2 cut(s)	430, 740
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	645
PaeR7I	CTCGAG	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	38, 52, 604
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	3 cut(s)	620, 661, 711
PpsI	GAGTC	3 cut(s)	620, 661, 711
Psp124BI	GAGCTC	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	430, 740
PspXI	VCTCGAGB	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	375, 760
RsaI	GTAC	3 cut(s)	31, 251, 508
RsaNI	GTAC	3 cut(s)	30, 250, 507
RseI	CAYNNNNRTG	1 cut(s)	729
SacI	GAGCTC	1 cut(s)	864
SalI	GTCGAC	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	5 cut(s)	61, 208, 688, 721, 784
ScaI	AGTACT	2 cut(s)	31, 508
SchI	GAGTC	3 cut(s)	620, 662, 712
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	3 cut(s)	58, 438, 649
SfcI	CTRYAG	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	510, 628
SmoI	CTYRAG	2 cut(s)	510, 628
Sse9I	AATT	3 cut(s)	472, 583, 743
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	3 cut(s)	222, 398, 916
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	506, 881
TaqI	TCGA	6 cut(s)	183, 563, 629, 783, 842, 876
TasI	AATT	3 cut(s)	472, 583, 743
TatI	WGTACW	2 cut(s)	29, 506
TfiI	GAWTC	3 cut(s)	38, 52, 604
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	6 cut(s)	44, 86, 123, 560, 747, 837
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	310
XceI	RCATGY	1 cut(s)	645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XhoI	CTCGAG	1 cut(s)	628
XmiI	GTMKAC	2 cut(s)	575, 876
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	3 cut(s)	222, 398, 916
ZrmI	AGTACT	2 cut(s)	31, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.