Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

25902060 .. 25903652

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTGTCATAAATACGAAAACACCAAGAGAAAGAAGCTAAAGAGAAAAATGGAGGAGGTCGATCAGAAGATGATGAGTGCTAGTGATTCAAATAACATGATTTATAAGAATCAAGATGCCAATATGCTTCCTGGGTATCGCTTTCACCCTACTGATGAAGAGCTGGTGAGGTTTTACCTTCGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGACCTAATCAAGCATGTCGATATTTACAAATATGACCCTTGGGATCTTCCAAAAGAGAGTGGGGACAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAGGAAATACAGAAATAGCATAAGACCTAATAGGGTTACAAAATCTGGGTTTTGGAAAGCTACTGGCATTGACAAGCCTGTATATTCGGTTGGAGACTTTCACAATTGCATTGGCTTGAAGAAATCCTTAGTCTACTACAGAGGAAGTGCTGGAAAAGGTACCAAAACTGATTGGATGATGCACGAGTTTCGTCTTCCAGCTAGTTCAAACAATGATACTTCTATCAAGAACAATACTCAAGAAGCTGAAGTTTGGACACTTTGCCGGATTTTGAAGCGAGATCATACTTCGTGTGGAAAGTATACATCAAATAATTGGCGTATGACAACCTTGAATCCCAAGCAAAGTGTGGCTTCTAAAACATGCAGTTCTGAGTCAGATGCAACTTTTGGTGCTTTGGCTGCTAACGATCAATCTGAGAGGAGTCCTCTATTCAATAATGTTCATACGTATGAAGGGAACCAATTCTCCCTAGGCTGGCTGAGCTTAAATGACGACGTAAACAATCCAAACTCGTGCATGAGCTTTCCGAATACTCCGAATGAAGAGATGTTAACATCGAATGGAAACTGGGATGAGCTCAGACCAATGGTTGACTGTGTTCTTAATCCGTCACTGCTATACAGTTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

315

Amino Acids

36.58

Weight (kDa)

9.09

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccI	GTMKAC	2 cut(s)	441, 611
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	290, 469
AfiI	CCNNNNNNNGG	1 cut(s)	786
AgsI	TTSAA	6 cut(s)	90, 427, 516, 583, 643, 745
AjnI	CCWGG	1 cut(s)	130
AloI	GAACNNNNNNTCC	2 cut(s)	761, 793
AluBI	AGCT	8 cut(s)	37, 163, 368, 509, 554, 795, 834, 889
AluI	AGCT	8 cut(s)	37, 163, 368, 509, 554, 795, 834, 889
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	710
Asp700I	GAANNNNTTC	1 cut(s)	773
Asp718I	GGTACC	1 cut(s)	467
AspA2I	CCTAGG	1 cut(s)	781
AsuHPI	GGTGA	2 cut(s)	137, 178
AvrII	CCTAGG	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	891
BauI	CACGAG	2 cut(s)	491, 823
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	1 cut(s)	697
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	3 cut(s)	81, 510, 782
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	1 cut(s)	711
BlnI	CCTAGG	1 cut(s)	781
BlpI	GCTNAGC	1 cut(s)	791
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	469, 770
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	3 cut(s)	106, 477, 679
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
Bpu1102I	GCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	131, 251, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	786
Bse1I	ACTGG	2 cut(s)	376, 884
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	131, 251, 781
BseGI	GGATG	2 cut(s)	489, 889
BseLI	CCNNNNNNNGG	1 cut(s)	786
BseMII	CTCAG	4 cut(s)	672, 717, 782, 904
BseNI	ACTGG	2 cut(s)	376, 884
BseRI	GAGGAG	2 cut(s)	68, 745
BseXI	GCAGC	1 cut(s)	697
BshNI	GGYRCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	786
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	61, 256, 589, 718
Bsp1720I	GCTNAGC	1 cut(s)	791
BspCNI	CTCAG	4 cut(s)	673, 718, 783, 903
BspLI	GGNNCC	2 cut(s)	469, 770
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	376, 884
BssECI	CCNNGG	3 cut(s)	131, 251, 781
BssMI	GATC	4 cut(s)	61, 256, 589, 718
BssNAI	GTATAC	1 cut(s)	612
BssSI	CACGAG	2 cut(s)	491, 823
BssT1I	CCWWGG	2 cut(s)	251, 781
Bst1107I	GTATAC	1 cut(s)	612
Bst2BI	CACGAG	2 cut(s)	491, 823
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	908, 935
Bst6I	CTCTTC	2 cut(s)	153, 849
BstBAI	YACGTR	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	5 cut(s)	436, 681, 726, 791, 890
BstF5I	GGATG	2 cut(s)	489, 889
BstKTI	GATC	4 cut(s)	64, 259, 592, 721
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	4 cut(s)	61, 256, 589, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	710, 792
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	230, 675
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	445
BstSNI	TACGTA	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZ17I	GTATAC	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	489, 889
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	1 cut(s)	923
Cac8I	GCNNGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	289, 468
CviAII	CATG	4 cut(s)	97, 227, 672, 829
CviQI	GTAC	2 cut(s)	289, 468
DdeI	CTNAG	5 cut(s)	436, 681, 726, 791, 890
DpnI	GATC	4 cut(s)	63, 258, 591, 720
DpnII	GATC	4 cut(s)	61, 256, 589, 718
Eam1104I	CTCTTC	2 cut(s)	153, 849
EarI	CTCTTC	2 cut(s)	153, 849
Ecl136II	GAGCTC	1 cut(s)	889
Eco105I	TACGTA	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	251, 781
Eco24I	GRGCYC	1 cut(s)	891
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	251, 781
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	251, 781
FaeI	CATG	4 cut(s)	100, 230, 675, 832
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 646, 678
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	96, 226, 671, 828
FblI	GTMKAC	2 cut(s)	441, 611
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	2 cut(s)	496, 896
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	3 cut(s)	81, 510, 782
GluI	GCNGC	1 cut(s)	711
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	4 cut(s)	100, 230, 675, 832
HincII	GTYRAC	2 cut(s)	864, 904
HindII	GTYRAC	2 cut(s)	864, 904
HinfI	GANTC	5 cut(s)	86, 109, 643, 683, 733
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	2 cut(s)	137, 178
Hpy166II	GTNNAC	5 cut(s)	442, 612, 811, 864, 904
Hpy188I	TCNGA	8 cut(s)	66, 183, 682, 688, 727, 840, 849, 893
Hpy188III	TCNNGA	4 cut(s)	113, 212, 535, 548
Hpy8I	GTNNAC	5 cut(s)	442, 612, 811, 864, 904
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	5 cut(s)	181, 188, 297, 303, 758
HpyCH4III	ACNGT	2 cut(s)	908, 935
HpyCH4IV	ACGT	2 cut(s)	758, 807
HpyCH4V	TGCA	6 cut(s)	300, 417, 490, 675, 692, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	710, 792
HpyF3I	CTNAG	5 cut(s)	436, 681, 726, 791, 890
HpySE526I	ACGT	2 cut(s)	758, 807
Hsp92II	CATG	4 cut(s)	100, 230, 675, 832
KpnI	GGTACC	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	4 cut(s)	61, 256, 589, 718
LguI	GCTCTTC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	3 cut(s)	106, 477, 679
MaeI	CTAG	3 cut(s)	81, 510, 782
MaeII	ACGT	2 cut(s)	758, 807
MaeIII	GTNAC	2 cut(s)	343, 921
MalI	GATC	4 cut(s)	63, 258, 591, 720
MboI	GATC	4 cut(s)	61, 256, 589, 718
MboII	GAAGA	6 cut(s)	79, 170, 251, 439, 494, 866
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	891
MluCI	AATT	3 cut(s)	412, 622, 773
MlyI	GAGTC	2 cut(s)	692, 742
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	46, 49, 162, 177, 443, 723, 747
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	3 cut(s)	797, 863, 915
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	710, 792
NdeII	GATC	4 cut(s)	61, 256, 589, 718
NlaIII	CATG	4 cut(s)	100, 230, 675, 832
NlaIV	GGNNCC	2 cut(s)	469, 770
NmuCI	GTSAC	1 cut(s)	921
NspI	RCATGY	2 cut(s)	230, 675
PciSI	GCTCTTC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	3 cut(s)	86, 109, 643
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	2 cut(s)	691, 741
PpsI	GAGTC	2 cut(s)	691, 741
Ppu21I	YACGTR	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	469, 770
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	290, 469
RsaNI	GTAC	2 cut(s)	289, 468
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	891
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	797, 863, 915
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	4 cut(s)	61, 256, 589, 718
SchI	GAGTC	2 cut(s)	692, 742
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	891
SfaNI	GCATC	3 cut(s)	106, 477, 679
SfcI	CTRYAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	759
Sse9I	AATT	3 cut(s)	412, 622, 773
SspMI	CTAG	3 cut(s)	81, 510, 782
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	251, 781
TaaI	ACNGT	2 cut(s)	908, 935
TaiI	ACGT	2 cut(s)	761, 810
TaqI	TCGA	3 cut(s)	60, 231, 869
TasI	AATT	3 cut(s)	412, 622, 773
TfiI	GAWTC	3 cut(s)	86, 109, 643
Tru1I	TTAA	3 cut(s)	797, 863, 915
Tru9I	TTAA	3 cut(s)	797, 863, 915
TscAI	CASTG	1 cut(s)	930
TseFI	GTSAC	1 cut(s)	921
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	1 cut(s)	921
TspDTI	ATGAA	4 cut(s)	171, 743, 777, 867
TspGWI	ACGGA	1 cut(s)	909
TspRI	CASTG	1 cut(s)	930
XceI	RCATGY	2 cut(s)	230, 675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	781
XmiI	GTMKAC	2 cut(s)	441, 611
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	3 cut(s)	81, 510, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.