Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

74063114 .. 74069807

Gene Structure 6694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAGGTGACAAAGGTTAAATTCAAGGATGATGATGAGGAATTAGCAGGTGGGATGCTTCCAGGGTTTCGGTTTCATCCGACCGATGAAGAACTTGTTGGGTTTTATCTGCCGGTTAAGGTGGAGAAGAAAAAGGTTTCTACTAGATTGGATCAACTCATCAGACAGATTGATATCTACAAATATGATCCCTGGGATCTTCCAATTAGCACTGAGGGAGACAAAGAGTGCTACTTCTTCTGCAGAAGAGGGAGAAAATACAGGAACAGCATAAGACCTAACAGAGTCACAGGATCTGGATTTTGGAAAGCCACTGGCATTGACAAACCCATTTATTCAGCTACGGAACCTCTCGAATGCATCGGACTCAAGAAATCGTTAGTGTACTACCGAGGGAGTGCAGGAAAAGGCACCAAAACCGACTGGATGATGAATGAGTTTCGCCTTCCACCTAATGGGAAAAGTTCTACCAACTTCCTCAATGTCAAAGACAATACACAAGAAGCTGAAGTATGGACACTGTGCAGAATATTCAAAAGAATCCCATCTTATAAGAAATATACACCAAATTGGAAGGAAGAACCCACATCAACTAAGCAGAATCCTAATACAACTGATTCAAATTCTAAAACATGCAGCTTGGAGTCTGAGAACTGCAGTACTCATGATCCATATTCGAGCCTCGAAGACTCGGTAGTCATTCAACACATTAATGAAAGAAAGCCAGTTGTGGAACAAGTCCATCGTGGTGAAACAAATTATCACTGGTTTAGTGGAAGGCAGTTGGGCTCTCTAGCTGATGAACATCATCATGAGGTTCATTCATTCGCAACATCTTATAATAGTTCATCCTTCATGAGAAATGAGCTCTCTTTAGATCAAAGCGAAACCGATAATTTCTTTACAGACGGAAGCTGCTGGGATGAGTTGAGACCAGTAGTTCAATTGGCTATGGATTCATCCACCAAGTTCATGACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

327

Amino Acids

37.77

Weight (kDa)

6.33

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 149	9.9e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	552, 840
AarI	CACCTGC	1 cut(s)	38
AasI	GACNNNNNNGTC	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	455
AclWI	GGATC	5 cut(s)	159, 182, 204, 301, 662
AcsI	RAATTY	2 cut(s)	20, 622
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	386, 661
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	25, 535, 621, 704, 944
AjnI	CCWGG	2 cut(s)	61, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	6 cut(s)	341, 506, 639, 797, 868, 915
AluI	AGCT	6 cut(s)	341, 506, 639, 797, 868, 915
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	213, 925
AlwI	GGATC	5 cut(s)	159, 182, 204, 301, 662
AlwNI	CAGNNNCTG	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	636, 915
ApoI	RAATTY	2 cut(s)	20, 622
AseI	ATTAAT	1 cut(s)	711
AsuHPI	GGTGA	2 cut(s)	19, 761
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	791, 870
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	648, 902
BccI	CCATC	2 cut(s)	553, 750
BciT130I	CCWGG	2 cut(s)	63, 193
BcoDI	GTCTC	2 cut(s)	213, 925
BfaI	CTAG	2 cut(s)	144, 794
BfmI	CTRYAG	2 cut(s)	241, 655
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	637, 916
BlsI	GCNGC	2 cut(s)	638, 917
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	63, 193
BmiI	GGNNCC	2 cut(s)	348, 412
BmrFI	CCNGG	2 cut(s)	63, 193
BmsI	GCATC	2 cut(s)	45, 369
BpiI	GAAGAC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	173, 804
BsaI	GGTCTC	1 cut(s)	925
BsaJI	CCNNGG	4 cut(s)	62, 191, 192, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	5 cut(s)	319, 428, 725, 770, 935
Bse8I	GATNNNNATC	2 cut(s)	173, 804
BseBI	CCWGG	2 cut(s)	63, 193
BseDI	CCNNGG	4 cut(s)	62, 191, 192, 391
BseGI	GGATG	7 cut(s)	34, 60, 76, 432, 848, 928, 959
BseJI	GATNNNNATC	2 cut(s)	173, 804
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	204, 639
BseNI	ACTGG	5 cut(s)	319, 428, 725, 770, 935
BseXI	GCAGC	2 cut(s)	648, 902
BseYI	CCCAGC	1 cut(s)	918
BsgI	GTGCAG	2 cut(s)	420, 544
Bsh1285I	CGRYCG	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	213, 925
BsmI	GAATGC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	925
Bsp1286I	GDGCHC	2 cut(s)	791, 870
Bsp143I	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
BspCNI	CTCAG	2 cut(s)	205, 640
BspHI	TCATGA	4 cut(s)	664, 811, 855, 972
BspLI	GGNNCC	2 cut(s)	348, 412
BspMAI	CTGCAG	2 cut(s)	245, 659
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	5 cut(s)	159, 182, 204, 301, 662
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	925
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	5 cut(s)	319, 428, 725, 770, 935
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	4 cut(s)	62, 191, 192, 391
BssMI	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
Bst2UI	CCWGG	2 cut(s)	63, 193
Bst4CI	ACNGT	2 cut(s)	522, 979
Bst6I	CTCTTC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	213, 594, 648
BstF5I	GGATG	7 cut(s)	34, 60, 76, 432, 848, 928, 959
BstKTI	GATC	6 cut(s)	154, 190, 199, 296, 670, 880
BstMAI	GTCTC	2 cut(s)	213, 925
BstMBI	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
BstMCI	CGRYCG	1 cut(s)	84
BstNI	CCWGG	2 cut(s)	63, 193
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	61, 191
BstSFI	CTRYAG	2 cut(s)	241, 655
BstV1I	GCAGC	2 cut(s)	648, 902
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	196, 293
BstYI	RGATCY	2 cut(s)	196, 293
BtsCI	GGATG	7 cut(s)	34, 60, 76, 432, 848, 928, 959
BtsIMutI	CAGTG	4 cut(s)	210, 312, 518, 763
BveI	ACCTGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	4 cut(s)	664, 811, 855, 972
Cfr10I	RCCGGY	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	385, 660
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	5 cut(s)	633, 665, 812, 856, 973
CviQI	GTAC	2 cut(s)	385, 660
DdeI	CTNAG	3 cut(s)	213, 594, 648
DpnI	GATC	6 cut(s)	153, 189, 198, 295, 669, 879
DpnII	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	868
Eco24I	GRGCYC	2 cut(s)	791, 870
Eco31I	GGTCTC	1 cut(s)	925
Eco32I	GATATC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	868
EcoRII	CCWGG	2 cut(s)	61, 191
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	362
EcoT38I	GRGCYC	2 cut(s)	791, 870
FaeI	CATG	5 cut(s)	636, 668, 815, 859, 976
FatI	CATG	5 cut(s)	632, 664, 811, 855, 972
Fnu4HI	GCNGC	2 cut(s)	637, 916
FokI	GGATG	7 cut(s)	41, 63, 67, 439, 835, 935, 946
FriOI	GRGCYC	2 cut(s)	791, 870
Fsp4HI	GCNGC	2 cut(s)	637, 916
FspBI	CTAG	2 cut(s)	144, 794
GluI	GCNGC	2 cut(s)	637, 916
GsaI	CCCAGC	1 cut(s)	922
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	5 cut(s)	636, 668, 815, 859, 976
HinfI	GANTC	8 cut(s)	285, 366, 540, 601, 617, 644, 689, 956
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	19, 761
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	4 cut(s)	81, 164, 365, 649
Hpy188III	TCNNGA	7 cut(s)	297, 353, 370, 665, 812, 856, 973
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	4 cut(s)	455, 568, 771, 862
HpyCH4III	ACNGT	2 cut(s)	522, 979
HpyCH4V	TGCA	6 cut(s)	243, 360, 401, 525, 636, 657
HpyF3I	CTNAG	3 cut(s)	213, 594, 648
Hsp92II	CATG	5 cut(s)	636, 668, 815, 859, 976
Kzo9I	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
Lsp1109I	GCAGC	2 cut(s)	648, 902
LweI	GCATC	2 cut(s)	45, 369
MaeI	CTAG	2 cut(s)	144, 794
MaeIII	GTNAC	2 cut(s)	7, 286
MalI	GATC	6 cut(s)	153, 189, 198, 295, 669, 879
MboI	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
MboII	GAAGA	7 cut(s)	101, 139, 191, 229, 258, 590, 698
MfeI	CAATTG	1 cut(s)	944
MflI	RGATCY	2 cut(s)	196, 293
MhlI	GDGCHC	2 cut(s)	791, 870
MluCI	AATT	8 cut(s)	20, 41, 204, 568, 622, 757, 895, 944
MlyI	GAGTC	4 cut(s)	294, 360, 653, 683
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	8 cut(s)	31, 208, 242, 360, 386, 488, 692, 808
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	3 cut(s)	18, 117, 711
MslI	CAYNNNNRTG	3 cut(s)	711, 747, 810
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	63, 193
MunI	CAATTG	1 cut(s)	944
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	63, 193
NdeII	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
NlaIII	CATG	5 cut(s)	636, 668, 815, 859, 976
NlaIV	GGNNCC	2 cut(s)	348, 412
NmuCI	GTSAC	2 cut(s)	7, 286
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	1 cut(s)	636
PagI	TCATGA	4 cut(s)	664, 811, 855, 972
PaqCI	CACCTGC	1 cut(s)	38
PasI	CCCWGGG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	4 cut(s)	540, 601, 617, 956
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	638, 917
PleI	GAGTC	4 cut(s)	293, 360, 652, 683
PpsI	GAGTC	4 cut(s)	293, 360, 652, 683
PshBI	ATTAAT	1 cut(s)	711
PsiI	TTATAA	2 cut(s)	552, 840
Psp124BI	GAGCTC	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	61, 191
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	2 cut(s)	61, 191
PspN4I	GGNNCC	2 cut(s)	348, 412
PstI	CTGCAG	2 cut(s)	245, 659
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	196, 293
RsaI	GTAC	2 cut(s)	386, 661
RsaNI	GTAC	2 cut(s)	385, 660
RseI	CAYNNNNRTG	3 cut(s)	711, 747, 810
SacI	GAGCTC	1 cut(s)	870
SaqAI	TTAA	3 cut(s)	18, 117, 711
SatI	GCNGC	2 cut(s)	637, 916
Sau3AI	GATC	6 cut(s)	151, 187, 196, 293, 667, 877
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	4 cut(s)	294, 360, 653, 683
ScrFI	CCNGG	2 cut(s)	63, 193
SduI	GDGCHC	2 cut(s)	791, 870
SfaNI	GCATC	2 cut(s)	45, 369
SfcI	CTRYAG	2 cut(s)	241, 655
SmiMI	CAYNNNNRTG	3 cut(s)	711, 747, 810
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	8 cut(s)	20, 41, 204, 568, 622, 757, 895, 944
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	2 cut(s)	144, 794
SstI	GAGCTC	1 cut(s)	870
StyD4I	CCNGG	2 cut(s)	61, 191
TaaI	ACNGT	2 cut(s)	522, 979
TaqI	TCGA	3 cut(s)	354, 677, 684
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	8 cut(s)	20, 41, 204, 568, 622, 757, 895, 944
TatI	WGTACW	2 cut(s)	384, 659
TfiI	GAWTC	4 cut(s)	540, 601, 617, 956
Tru1I	TTAA	3 cut(s)	18, 117, 711
Tru9I	TTAA	3 cut(s)	18, 117, 711
TscAI	CASTG	4 cut(s)	217, 319, 525, 770
TseFI	GTSAC	2 cut(s)	7, 286
TseI	GCWGC	2 cut(s)	636, 915
Tsp45I	GTSAC	2 cut(s)	7, 286
TspGWI	ACGGA	2 cut(s)	359, 924
TspRI	CASTG	4 cut(s)	217, 319, 525, 770
Van91I	CCANNNNNTGG	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	711
XapI	RAATTY	2 cut(s)	20, 622
XceI	RCATGY	1 cut(s)	636
XspI	CTAG	2 cut(s)	144, 794
ZrmI	AGTACT	1 cut(s)	661
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.