MD05G1258300.v1.1

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002908
Physical Location & Seq
Forward (+)
39453635 .. 39455028
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1258300.v1.1.491

Sequence Viewer

Length: 903 bp
ATGGAGGAGGTCGATCAGAAGATGATGAGTGCTAGTGATTCAAATAACATGATTTATAAGGATCAAGATGCAAATATGCTTCCTGGGTATCGCTTTCACCCTACTGATGAAGAGCTAGTGAGGTTTTACCTTCGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGACCTAATCAAGCATGTTGATATTTACAAATATGACCCTTGGGATCTTCCAAAAGCGAGTGGGGACAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAGGAAATACAGAAATAGCATAAGACCTAATAGGGTTACAAAATCTGGGTTTTGGAAAGCTACTGGCATTGACAAGCCTGTATATTCGGTTGGAGACTTTCACAATTGCATTGGCTTGAAGAAATCCTTAGTCTACTACAGAGGAAGTGCCGGAAAAGGTACCAAAACTGATTGGATGATGCACGAGTTTCGTCTTCCAGCTAGTTCAAACACTGATACTTCTATCAAGAACAGTACTCAAGAAGCTGAAGTTTGGACACTTTGCCGGATTTTGAAGCGAGATCATACTTCGTGTGGAAAGTATACATCAAATTGGCGTATGACAACCTTGAATCCCAAGCAAAGTGTGGCTGGCTCAAGTTCTAAAACATGCAGTTCTGAGTCAGATGCAACTTTTGGTGCTTTGGCTGCTAACGATCAATCTGAGAGGAGTCCTCTTTTCAATAATGTTCATACGTATGAAGGGAACCAATTCTCCCTAGGCCGGCTGAGCTTAAATGACGACGTAAACAATCCAAACTCGTGCATAAGCTTTCCGAATACTCCAAATGAAGAGATGTTAACATCGAATGGAAACTGGGATGAGCTCAGACCAATGGTTGACTGTGTTCTTAATCCGTCACTGCTATACAGTTATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

301

Amino Acids

34.48

Weight (kDa)

8.55

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 28 - 152 2.9e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccI GTMKAC 2 cut(s) 393, 563
AclWI GGATC 2 cut(s) 69, 216
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 3 cut(s) 242, 421, 496
AfiI CCNNNNNNNGG 1 cut(s) 744
AgsI TTSAA 6 cut(s) 42, 379, 468, 535, 592, 703
AjnI CCWGG 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 7 cut(s) 115, 320, 461, 506, 753, 792, 847
AluI AGCT 7 cut(s) 115, 320, 461, 506, 753, 792, 847
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 69, 216
AoxI GGCC 1 cut(s) 742
ApeKI GCWGC 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 731
Asp718I GGTACC 1 cut(s) 419
AspA2I CCTAGG 1 cut(s) 739
AsuHPI GGTGA 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 739
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 849
BauI CACGAG 2 cut(s) 443, 781
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 849
BbvI GCAGC 1 cut(s) 655
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 4 cut(s) 33, 116, 462, 740
BfmI CTRYAG 1 cut(s) 397
BisI GCNGC 1 cut(s) 669
BlnI CCTAGG 1 cut(s) 739
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 1 cut(s) 670
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 421, 728
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 3 cut(s) 58, 429, 637
BmuI ACTGGG 1 cut(s) 847
BpiI GAAGAC 1 cut(s) 446
BplI GAGNNNNNCTC 2 cut(s) 679, 711
Bpu1102I GCTNAGC 1 cut(s) 749
BpuEI CTTGAG 2 cut(s) 483, 601
BsaAI YACGTR 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 83, 203, 739
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 2 cut(s) 328, 842
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 3 cut(s) 83, 203, 739
BseGI GGATG 2 cut(s) 441, 847
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMII CTCAG 4 cut(s) 630, 675, 740, 862
BseNI ACTGG 2 cut(s) 328, 842
BseRI GAGGAG 2 cut(s) 20, 703
BseXI GCAGC 1 cut(s) 655
BshFI GGCC 1 cut(s) 744
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 849
BsiSI CCGG 3 cut(s) 411, 526, 745
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 5 cut(s) 13, 61, 208, 541, 676
Bsp1720I GCTNAGC 1 cut(s) 749
BspANI GGCC 1 cut(s) 744
BspCNI CTCAG 4 cut(s) 631, 676, 741, 861
BspLI GGNNCC 2 cut(s) 421, 728
BspPI GGATC 2 cut(s) 69, 216
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 419
BsrFI RCCGGY 1 cut(s) 744
BsrI ACTGG 2 cut(s) 328, 842
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 3 cut(s) 83, 203, 739
BssMI GATC 5 cut(s) 13, 61, 208, 541, 676
BssNAI GTATAC 1 cut(s) 564
BssSI CACGAG 2 cut(s) 443, 781
BssT1I CCWWGG 2 cut(s) 203, 739
Bst1107I GTATAC 1 cut(s) 564
Bst2BI CACGAG 2 cut(s) 443, 781
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 494, 866, 893
Bst6I CTCTTC 2 cut(s) 105, 807
BstBAI YACGTR 1 cut(s) 717
BstC8I GCNNGC 2 cut(s) 613, 746
BstDEI CTNAG 5 cut(s) 388, 639, 684, 749, 848
BstF5I GGATG 2 cut(s) 441, 847
BstKTI GATC 5 cut(s) 16, 64, 211, 544, 679
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 5 cut(s) 13, 61, 208, 541, 676
BstMWI GCNNNNNNNGC 2 cut(s) 668, 750
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 182, 633
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 397
BstSNI TACGTA 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 744
BtsCI GGATG 2 cut(s) 441, 847
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 471, 881
Cac8I GCNNGC 2 cut(s) 613, 746
Cfr10I RCCGGY 1 cut(s) 744
Csp6I GTAC 3 cut(s) 241, 420, 495
CviAII CATG 3 cut(s) 49, 179, 630
CviQI GTAC 3 cut(s) 241, 420, 495
DdeI CTNAG 5 cut(s) 388, 639, 684, 749, 848
DpnI GATC 5 cut(s) 15, 63, 210, 543, 678
DpnII GATC 5 cut(s) 13, 61, 208, 541, 676
Eam1104I CTCTTC 2 cut(s) 105, 807
EarI CTCTTC 2 cut(s) 105, 807
Ecl136II GAGCTC 1 cut(s) 847
Eco105I TACGTA 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 203, 739
Eco24I GRGCYC 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 203, 739
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 2 cut(s) 203, 739
FaeI CATG 3 cut(s) 52, 182, 633
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 48, 178, 629
FblI GTMKAC 2 cut(s) 393, 563
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 2 cut(s) 448, 854
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 1 cut(s) 669
FspBI CTAG 4 cut(s) 33, 116, 462, 740
GluI GCNGC 1 cut(s) 669
HaeIII GGCC 1 cut(s) 744
HapII CCGG 3 cut(s) 411, 526, 745
Hin1II CATG 3 cut(s) 52, 182, 633
HincII GTYRAC 2 cut(s) 822, 862
HindII GTYRAC 2 cut(s) 822, 862
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 4 cut(s) 38, 592, 641, 691
HpaI GTTAAC 1 cut(s) 822
HpaII CCGG 3 cut(s) 411, 526, 745
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 5 cut(s) 394, 564, 769, 822, 862
Hpy188I TCNGA 7 cut(s) 18, 135, 640, 646, 685, 798, 851
Hpy188III TCNNGA 4 cut(s) 65, 164, 487, 500
Hpy8I GTNNAC 5 cut(s) 394, 564, 769, 822, 862
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 5 cut(s) 133, 140, 249, 255, 716
HpyCH4III ACNGT 3 cut(s) 494, 866, 893
HpyCH4IV ACGT 2 cut(s) 716, 765
HpyCH4V TGCA 7 cut(s) 71, 252, 369, 442, 633, 650, 786
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 750
HpyF3I CTNAG 5 cut(s) 388, 639, 684, 749, 848
HpySE526I ACGT 2 cut(s) 716, 765
Hsp92II CATG 3 cut(s) 52, 182, 633
KpnI GGTACC 1 cut(s) 423
KroI GCCGGC 1 cut(s) 744
KroNI GCCGGC 1 cut(s) 746
KspAI GTTAAC 1 cut(s) 822
Kzo9I GATC 5 cut(s) 13, 61, 208, 541, 676
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 3 cut(s) 58, 429, 637
MaeI CTAG 4 cut(s) 33, 116, 462, 740
MaeII ACGT 2 cut(s) 716, 765
MaeIII GTNAC 2 cut(s) 295, 879
MalI GATC 5 cut(s) 15, 63, 210, 543, 678
MboI GATC 5 cut(s) 13, 61, 208, 541, 676
MboII GAAGA 6 cut(s) 31, 122, 203, 391, 446, 824
MfeI CAATTG 1 cut(s) 364
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 3 cut(s) 364, 571, 731
MlyI GAGTC 2 cut(s) 650, 700
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 5 cut(s) 114, 129, 395, 681, 705
MroNI GCCGGC 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 3 cut(s) 755, 821, 873
MslI CAYNNNNRTG 1 cut(s) 717
MspI CCGG 3 cut(s) 411, 526, 745
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 668, 750
NaeI GCCGGC 1 cut(s) 746
NdeII GATC 5 cut(s) 13, 61, 208, 541, 676
NgoMIV GCCGGC 1 cut(s) 744
NlaIII CATG 3 cut(s) 52, 182, 633
NlaIV GGNNCC 2 cut(s) 421, 728
NmuCI GTSAC 1 cut(s) 879
NspI RCATGY 2 cut(s) 182, 633
PciSI GCTCTTC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 746
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 2 cut(s) 38, 592
PkrI GCNGC 1 cut(s) 670
PleI GAGTC 2 cut(s) 649, 699
PpsI GAGTC 2 cut(s) 649, 699
Ppu21I YACGTR 1 cut(s) 717
PsiI TTATAA 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 421, 728
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 3 cut(s) 242, 421, 496
RsaNI GTAC 3 cut(s) 241, 420, 495
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 849
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 755, 821, 873
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 5 cut(s) 13, 61, 208, 541, 676
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 2 cut(s) 650, 700
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 3 cut(s) 58, 429, 637
SfcI CTRYAG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 2 cut(s) 498, 616
SmoI CTYRAG 2 cut(s) 498, 616
SnaBI TACGTA 1 cut(s) 717
Sse9I AATT 3 cut(s) 364, 571, 731
SspMI CTAG 4 cut(s) 33, 116, 462, 740
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 2 cut(s) 203, 739
TaaI ACNGT 3 cut(s) 494, 866, 893
TaiI ACGT 2 cut(s) 719, 768
TaqI TCGA 2 cut(s) 12, 827
TasI AATT 3 cut(s) 364, 571, 731
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 2 cut(s) 38, 592
Tru1I TTAA 3 cut(s) 755, 821, 873
Tru9I TTAA 3 cut(s) 755, 821, 873
TscAI CASTG 2 cut(s) 478, 888
TseFI GTSAC 1 cut(s) 879
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 879
TspDTI ATGAA 4 cut(s) 123, 701, 735, 825
TspGWI ACGGA 1 cut(s) 867
TspRI CASTG 2 cut(s) 478, 888
XceI RCATGY 2 cut(s) 182, 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmaJI CCTAGG 1 cut(s) 739
XmiI GTMKAC 2 cut(s) 393, 563
XmnI GAANNNNTTC 1 cut(s) 731
XspI CTAG 4 cut(s) 33, 116, 462, 740
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.