Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

12049725 .. 12051915

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1134400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGGTGGCAAAGGTCGTGAGAAATTCATCAGAAAAGGATAAGGATGAAGAGGAAGTGATGCTTCCAGGGTTTAGATTTCATCCAACAGATGAGGAGCTTGTTGGGTTTTATCTAAAGAGGAAGGTGGAGAAGAGAGCTATTAGTATGGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGTTAGCAGTGCGGGGGACAAAGAGTGCTACTTCTTCTGCAGAAGAGGAAGAAAATATAGGAACAGCATAAGACCTAACAGAGTCACAGGTTCTGGATTTTGGAAAGCCACCGGGATTGACAAGGCCATATATTCAGTTAAAGATCCCCACGAGTGCATTGGCCTCAAGAAATCATTAGTCTACTACCGTGGGAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGAATGAGTTTCGCCTTCCTCCTAATGGCCATGGAAAAACTACCAAGTTCCCAAATGCCAAAGTCGACGTTACACAAGAAGAAGCTGAAGTTTGGACACTCTGCAGAATTTTCAAGCGAATCCCATCTTATAAAAAGTACACACCAGACTGCATAGAATCCACAACCAAACAAAACCCTACTGATTCAAGTTCTAAAACATGCAGCTTCGAATCTGGGAGCTACTGCAGTGAGCTACACTTCGGACTCGAAGATTCAGTCATCCAACGCATTGAAAGACCAAAACCAGTTCAAGTGGATGAAGCAAATCAGTGGCTTGTAGCTGTAGGGGAGTTGGACTCTATATCTTACCCGACTCCATTTGCAACAACTTATTCAAGCTTGACGAACCTGAGCGACGGCGATTTCTTTACTAATGGAAACTGGGATGAGCTGAGACCAGTGGTTCAGCTGGCTGTTGATCCATCGTCCCAAGTTTATGACTGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

307

Amino Acids

35.04

Weight (kDa)

7.51

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 149	1.1e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	410
AccI	GTMKAC	2 cut(s)	384, 495
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	4 cut(s)	179, 201, 341, 884
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	25, 537
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	544, 618, 704, 722, 807
AjnI	CCWGG	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	859
AlwI	GGATC	4 cut(s)	179, 201, 341, 884
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	3 cut(s)	327, 364, 457
ApeKI	GCWGC	1 cut(s)	633
ApoI	RAATTY	2 cut(s)	25, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	672, 704
AsuC2I	CCSGG	1 cut(s)	316
AsuII	TTCGAA	1 cut(s)	639
BalI	TGGCCA	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	2 cut(s)	562, 901
BceAI	ACGGC	1 cut(s)	844
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	859
BfmI	CTRYAG	5 cut(s)	241, 532, 655, 753, 913
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	69, 316
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	69, 316
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	862
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
Bpu10I	CCTNAGC	1 cut(s)	821
Bpu14I	TTCGAA	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	859
BsaJI	CCNNGG	4 cut(s)	68, 188, 391, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	3 cut(s)	716, 857, 869
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	68, 188, 391, 460
BseGI	GGATG	6 cut(s)	52, 82, 432, 690, 733, 862
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	812, 854
BseNI	ACTGG	3 cut(s)	716, 857, 869
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	645
BshFI	GGCC	3 cut(s)	329, 366, 459
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	233, 883
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	859
BsmFI	GGGAC	2 cut(s)	233, 883
BsnI	GGCC	3 cut(s)	329, 366, 459
Bso31I	GGTCTC	1 cut(s)	859
Bsp119I	TTCGAA	1 cut(s)	639
Bsp143I	GATC	4 cut(s)	184, 193, 346, 889
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	329, 366, 459
BspCNI	CTCAG	2 cut(s)	813, 855
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	3 cut(s)	245, 536, 659
BspPI	GGATC	4 cut(s)	179, 201, 341, 884
BspT104I	TTCGAA	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	859
BsrI	ACTGG	3 cut(s)	716, 857, 869
BssECI	CCNNGG	4 cut(s)	68, 188, 391, 460
BssMI	GATC	4 cut(s)	184, 193, 346, 889
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	188, 460
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	392, 914
Bst6I	CTCTTC	3 cut(s)	45, 128, 241
BstBI	TTCGAA	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	403, 882
BstDEI	CTNAG	2 cut(s)	821, 863
BstDSI	CCRYGG	2 cut(s)	391, 460
BstF5I	GGATG	6 cut(s)	52, 82, 432, 690, 733, 862
BstKTI	GATC	4 cut(s)	187, 196, 349, 892
BstMAI	GTCTC	1 cut(s)	859
BstMBI	GATC	4 cut(s)	184, 193, 346, 889
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	67, 314
BstSFI	CTRYAG	5 cut(s)	241, 532, 655, 753, 913
BstV1I	GCAGC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	193, 346
BstYI	RGATCY	2 cut(s)	193, 346
BsuRI	GGCC	3 cut(s)	329, 366, 459
BtgI	CCRYGG	2 cut(s)	391, 460
BtsCI	GGATG	6 cut(s)	52, 82, 432, 690, 733, 862
BtsI	GCAGTG	2 cut(s)	217, 664
BtsIMutI	CAGTG	4 cut(s)	217, 664, 746, 876
Cac8I	GCNNGC	2 cut(s)	403, 882
CaiI	CAGNNNCTG	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	568
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	2 cut(s)	461, 630
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	821, 863
DpnI	GATC	4 cut(s)	186, 195, 348, 891
DpnII	GATC	4 cut(s)	184, 193, 346, 889
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	45, 128, 241
EarI	CTCTTC	3 cut(s)	45, 128, 241
Eco130I	CCWWGG	2 cut(s)	188, 460
Eco31I	GGTCTC	1 cut(s)	859
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	188, 460
ErhI	CCWWGG	2 cut(s)	188, 460
FaeI	CATG	2 cut(s)	464, 633
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	233, 883
FatI	CATG	2 cut(s)	460, 629
FauI	CCCGC	1 cut(s)	208
FblI	GTMKAC	2 cut(s)	384, 495
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	6 cut(s)	59, 69, 439, 677, 740, 869
Fsp4HI	GCNGC	1 cut(s)	634
GluI	GCNGC	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	329, 366, 459
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	2 cut(s)	464, 633
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	808
HinfI	GANTC	9 cut(s)	285, 549, 587, 614, 641, 675, 683, 767, 784
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	385, 496, 570
Hpy188I	TCNGA	2 cut(s)	34, 674
Hpy188III	TCNNGA	3 cut(s)	19, 297, 370
Hpy8I	GTNNAC	3 cut(s)	385, 496, 570
Hpy99I	CGWCG	2 cut(s)	500, 830
HpyAV	CCTTC	2 cut(s)	118, 455
HpyCH4III	ACNGT	2 cut(s)	392, 914
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	7 cut(s)	243, 360, 534, 582, 633, 657, 794
HpyF3I	CTNAG	2 cut(s)	821, 863
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	464, 633
Kzo9I	GATC	4 cut(s)	184, 193, 346, 889
LmnI	GCTCC	2 cut(s)	97, 648
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	286, 499
MalI	GATC	4 cut(s)	186, 195, 348, 891
MboI	GATC	4 cut(s)	184, 193, 346, 889
MboII	GAAGA	8 cut(s)	62, 145, 188, 229, 258, 264, 521, 692
MflI	RGATCY	2 cut(s)	193, 346
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	2 cut(s)	25, 537
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	4 cut(s)	294, 669, 761, 778
MmeI	TCCRAC	3 cut(s)	110, 718, 744
MnlI	CCTC	6 cut(s)	46, 88, 114, 242, 377, 459
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	880
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	69, 316
MvaI	CCWGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	4 cut(s)	184, 193, 346, 889
NlaIII	CATG	2 cut(s)	464, 633
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	633
NspV	TTCGAA	1 cut(s)	639
PfeI	GAWTC	5 cut(s)	549, 587, 614, 641, 683
PkrI	GCNGC	1 cut(s)	635
PleI	GAGTC	4 cut(s)	293, 669, 761, 778
PpsI	GAGTC	4 cut(s)	293, 669, 761, 778
PsiI	TTATAA	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	412
PstI	CTGCAG	3 cut(s)	245, 536, 659
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	193, 346
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	4 cut(s)	184, 193, 346, 889
SchI	GAGTC	4 cut(s)	294, 669, 761, 778
ScrFI	CCNGG	2 cut(s)	69, 316
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	5 cut(s)	241, 532, 655, 753, 913
SfuI	TTCGAA	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	25, 537
SsiI	CCGC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	67, 314
StyI	CCWWGG	2 cut(s)	188, 460
TaaI	ACNGT	2 cut(s)	392, 914
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	495, 639, 678
TasI	AATT	2 cut(s)	25, 537
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	5 cut(s)	549, 587, 614, 641, 683
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	4 cut(s)	217, 664, 746, 876
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	5 cut(s)	18, 63, 71, 446, 744
TspRI	CASTG	4 cut(s)	217, 664, 746, 876
XapI	RAATTY	2 cut(s)	25, 537
XceI	RCATGY	1 cut(s)	633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	2 cut(s)	384, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.