Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Reverse (-)

66898098 .. 66901808

Gene Structure 3711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGGTGACAAAGGTTAAACTCATGGATGATGATGAGGAATTAGCAGGTGGGATGCTACCAGGGTTTCGGTTTCATCCGACTGACGAAGAACTTGTTGGGTTTTATCTGCCGGTTAAGGTGGAGAAGAAAAAGATGAGTACTAGAACTTCTACTAAATTGGATCAACTCATCAGACAGATTGATATCTACAAATATGATCCCTGGGATCTTCCAATTAGCACTGAGGGAGACAAAGAGTGCTACTTCTTCTGCAGAAGAGGGAGAAAATACAGGAACAGCATAAGACCTAACAGAGTCACAGGATCTGGATTTTGGAAAGCCACCGGCATTGACAAACCCATTTATTCAGCTAAGGAATCACCTCTCGAATGCATCGGACTCAAGAAATCGTTAGTGTACTACCGAGGGAGTGCAGGAAAAGGCACCAAAACCGACTGGATGATGAATGAGTTTCGCCTTCCACCTAATGGGAAAAGTTCTACCAACTTCCTCAATGCCAAAGACAATACACAAGAAGCTGAAGTATGGACACTGTGCAGAATATTCAAAAGAATCCCATCTTATAAGAAATATACACCAAATTGGAAGGAAGAAGCCACATCAACTAAGCAGAATCCTAATACAACTGATTCAAATTCTAAAACATGCAGCTTGGAGTCTGAGAACTGCAGTACTCATGATCCATATTCGAGCCTCGAAGACTCGGTAGTCATTCAACACATTAATGAAAGAAAGCCAGTTGTGGAACAAGTCCATCGTGGTGAAACAAATTATCACTGGTTTAGTGGAAGGCAGTTGGGCTCTCTAGCTGATGAACATCATCATGAAGTTCATTCATTCGCAACATCTTATAATAGTTCATCCTTCATGAGAAATGAGCTCTCTTTAGATCCAAGCGAAACCGATAATTTCTTTACAGACGGAAGCTGCTGGGATGAGTTGAGACCAGTAGTTCAATTGGCTATGGATTCATCCACCAAGTTCATGACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

333

Amino Acids

38.22

Weight (kDa)

6.52

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 154	6e-39	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 855
AarI	CACCTGC	1 cut(s)	38
AasI	GACNNNNNNGTC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	470
AclWI	GGATC	6 cut(s)	171, 194, 216, 313, 677, 887
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	3 cut(s)	142, 401, 676
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	550, 636, 719, 959
AjnI	CCWGG	2 cut(s)	61, 203
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	6 cut(s)	353, 521, 654, 812, 883, 930
AluI	AGCT	6 cut(s)	353, 521, 654, 812, 883, 930
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	2 cut(s)	225, 940
AlwI	GGATC	6 cut(s)	171, 194, 216, 313, 677, 887
AlwNI	CAGNNNCTG	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	651, 930
ApoI	RAATTY	1 cut(s)	637
AseI	ATTAAT	1 cut(s)	726
AsuHPI	GGTGA	3 cut(s)	19, 354, 776
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	2 cut(s)	806, 885
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	663, 917
BccI	CCATC	2 cut(s)	568, 765
BciT130I	CCWGG	2 cut(s)	63, 205
BcoDI	GTCTC	2 cut(s)	225, 940
BfaI	CTAG	2 cut(s)	144, 809
BfmI	CTRYAG	2 cut(s)	253, 670
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	652, 931
BlsI	GCNGC	2 cut(s)	653, 932
BmcAI	AGTACT	2 cut(s)	142, 676
Bme1390I	CCNGG	2 cut(s)	63, 205
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	63, 205
BmsI	GCATC	2 cut(s)	45, 384
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	2 cut(s)	185, 819
BsaI	GGTCTC	1 cut(s)	940
BsaJI	CCNNGG	4 cut(s)	62, 203, 204, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	2 cut(s)	112, 326
Bse1I	ACTGG	4 cut(s)	443, 740, 785, 950
Bse8I	GATNNNNATC	2 cut(s)	185, 819
BseBI	CCWGG	2 cut(s)	63, 205
BseDI	CCNNGG	4 cut(s)	62, 203, 204, 406
BseGI	GGATG	7 cut(s)	34, 60, 76, 447, 863, 943, 974
BseJI	GATNNNNATC	2 cut(s)	185, 819
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	216, 654
BseNI	ACTGG	4 cut(s)	443, 740, 785, 950
BseXI	GCAGC	2 cut(s)	663, 917
BseYI	CCCAGC	1 cut(s)	933
BsgI	GTGCAG	2 cut(s)	435, 559
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	885
BsiSI	CCGG	2 cut(s)	113, 327
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	225, 940
BsmI	GAATGC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	940
Bsp1286I	GDGCHC	2 cut(s)	806, 885
Bsp143I	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
BspCNI	CTCAG	2 cut(s)	217, 655
BspHI	TCATGA	4 cut(s)	679, 826, 870, 987
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	2 cut(s)	257, 674
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	6 cut(s)	171, 194, 216, 313, 677, 887
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	940
BsrFI	RCCGGY	2 cut(s)	112, 326
BsrI	ACTGG	4 cut(s)	443, 740, 785, 950
BssAI	RCCGGY	2 cut(s)	112, 326
BssECI	CCNNGG	4 cut(s)	62, 203, 204, 406
BssMI	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
Bst2UI	CCWGG	2 cut(s)	63, 205
Bst4CI	ACNGT	2 cut(s)	537, 994
Bst6I	CTCTTC	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	225, 354, 609, 663
BstF5I	GGATG	7 cut(s)	34, 60, 76, 447, 863, 943, 974
BstKTI	GATC	6 cut(s)	166, 202, 211, 308, 685, 895
BstMAI	GTCTC	2 cut(s)	225, 940
BstMBI	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
BstNI	CCWGG	2 cut(s)	63, 205
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	61, 203
BstSFI	CTRYAG	2 cut(s)	253, 670
BstV1I	GCAGC	2 cut(s)	663, 917
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	3 cut(s)	208, 305, 892
BstYI	RGATCY	3 cut(s)	208, 305, 892
BtsCI	GGATG	7 cut(s)	34, 60, 76, 447, 863, 943, 974
BtsIMutI	CAGTG	3 cut(s)	222, 533, 778
BveI	ACCTGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	4 cut(s)	679, 826, 870, 987
Cfr10I	RCCGGY	2 cut(s)	112, 326
Csp6I	GTAC	3 cut(s)	141, 400, 675
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	6 cut(s)	25, 648, 680, 827, 871, 988
CviQI	GTAC	3 cut(s)	141, 400, 675
DdeI	CTNAG	4 cut(s)	225, 354, 609, 663
DpnI	GATC	6 cut(s)	165, 201, 210, 307, 684, 894
DpnII	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	883
Eco24I	GRGCYC	2 cut(s)	806, 885
Eco31I	GGTCTC	1 cut(s)	940
Eco32I	GATATC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	61, 203
EcoRV	GATATC	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	377
EcoT38I	GRGCYC	2 cut(s)	806, 885
FaeI	CATG	6 cut(s)	28, 651, 683, 830, 874, 991
FatI	CATG	6 cut(s)	24, 647, 679, 826, 870, 987
Fnu4HI	GCNGC	2 cut(s)	652, 931
FokI	GGATG	7 cut(s)	41, 63, 67, 454, 850, 950, 961
FriOI	GRGCYC	2 cut(s)	806, 885
Fsp4HI	GCNGC	2 cut(s)	652, 931
FspBI	CTAG	2 cut(s)	144, 809
GluI	GCNGC	2 cut(s)	652, 931
GsaI	CCCAGC	1 cut(s)	937
HapII	CCGG	2 cut(s)	113, 327
Hin1II	CATG	6 cut(s)	28, 651, 683, 830, 874, 991
HinfI	GANTC	9 cut(s)	297, 359, 381, 555, 616, 632, 659, 704, 971
HpaII	CCGG	2 cut(s)	113, 327
HphI	GGTGA	3 cut(s)	19, 354, 776
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	4 cut(s)	81, 176, 380, 664
Hpy188III	TCNNGA	7 cut(s)	309, 368, 385, 680, 827, 871, 988
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	4 cut(s)	470, 583, 786, 877
HpyCH4III	ACNGT	2 cut(s)	537, 994
HpyCH4V	TGCA	6 cut(s)	255, 375, 416, 540, 651, 672
HpyF3I	CTNAG	4 cut(s)	225, 354, 609, 663
Hsp92II	CATG	6 cut(s)	28, 651, 683, 830, 874, 991
Kzo9I	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
Lsp1109I	GCAGC	2 cut(s)	663, 917
LweI	GCATC	2 cut(s)	45, 384
MaeI	CTAG	2 cut(s)	144, 809
MaeIII	GTNAC	2 cut(s)	7, 298
MalI	GATC	6 cut(s)	165, 201, 210, 307, 684, 894
MboI	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
MboII	GAAGA	7 cut(s)	101, 139, 203, 241, 270, 605, 713
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	3 cut(s)	208, 305, 892
MhlI	GDGCHC	2 cut(s)	806, 885
MluCI	AATT	8 cut(s)	41, 158, 216, 583, 637, 772, 910, 959
MlyI	GAGTC	4 cut(s)	306, 375, 668, 698
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	7 cut(s)	31, 220, 254, 375, 401, 503, 707
Mph1103I	ATGCAT	1 cut(s)	377
MseI	TTAA	3 cut(s)	18, 117, 726
MslI	CAYNNNNRTG	3 cut(s)	726, 762, 825
MspI	CCGG	2 cut(s)	113, 327
MspR9I	CCNGG	2 cut(s)	63, 205
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	63, 205
NdeII	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
NlaIII	CATG	6 cut(s)	28, 651, 683, 830, 874, 991
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	7, 298
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	1 cut(s)	651
PagI	TCATGA	4 cut(s)	679, 826, 870, 987
PaqCI	CACCTGC	1 cut(s)	38
PasI	CCCWGGG	1 cut(s)	204
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	5 cut(s)	359, 555, 616, 632, 971
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	653, 932
PleI	GAGTC	4 cut(s)	305, 375, 667, 698
PpsI	GAGTC	4 cut(s)	305, 375, 667, 698
PshBI	ATTAAT	1 cut(s)	726
PsiI	TTATAA	2 cut(s)	567, 855
Psp124BI	GAGCTC	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	61, 203
PspFI	CCCAGC	1 cut(s)	933
PspGI	CCWGG	2 cut(s)	61, 203
PspN4I	GGNNCC	1 cut(s)	427
PstI	CTGCAG	2 cut(s)	257, 674
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	3 cut(s)	208, 305, 892
RsaI	GTAC	3 cut(s)	142, 401, 676
RsaNI	GTAC	3 cut(s)	141, 400, 675
RseI	CAYNNNNRTG	3 cut(s)	726, 762, 825
SacI	GAGCTC	1 cut(s)	885
SaqAI	TTAA	3 cut(s)	18, 117, 726
SatI	GCNGC	2 cut(s)	652, 931
Sau3AI	GATC	6 cut(s)	163, 199, 208, 305, 682, 892
ScaI	AGTACT	2 cut(s)	142, 676
SchI	GAGTC	4 cut(s)	306, 375, 668, 698
ScrFI	CCNGG	2 cut(s)	63, 205
SduI	GDGCHC	2 cut(s)	806, 885
SfaNI	GCATC	2 cut(s)	45, 384
SfcI	CTRYAG	2 cut(s)	253, 670
SmiMI	CAYNNNNRTG	3 cut(s)	726, 762, 825
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	8 cut(s)	41, 158, 216, 583, 637, 772, 910, 959
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	2 cut(s)	144, 809
SstI	GAGCTC	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	61, 203
TaaI	ACNGT	2 cut(s)	537, 994
TaqI	TCGA	3 cut(s)	369, 692, 699
TasI	AATT	8 cut(s)	41, 158, 216, 583, 637, 772, 910, 959
TatI	WGTACW	3 cut(s)	140, 399, 674
TfiI	GAWTC	5 cut(s)	359, 555, 616, 632, 971
Tru1I	TTAA	3 cut(s)	18, 117, 726
Tru9I	TTAA	3 cut(s)	18, 117, 726
TscAI	CASTG	3 cut(s)	229, 540, 785
TseFI	GTSAC	2 cut(s)	7, 298
TseI	GCWGC	2 cut(s)	651, 930
Tsp45I	GTSAC	2 cut(s)	7, 298
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	3 cut(s)	229, 540, 785
Van91I	CCANNNNNTGG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	651
XspI	CTAG	2 cut(s)	144, 809
ZrmI	AGTACT	2 cut(s)	142, 676
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.