Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002908

Physical Location & Seq

Genomic Coordinates Forward (+)

80709526 .. 80711255

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGTGCAGAAGATGATGATGAGGGATTCGATTAACAACACTAAGGATGATGCAGACTATCTTCCGGGGTATCGCTTTCATCCCACTGATGAAGAACTTGTGAGGTTTTACCTCAGGAGGAAGGTGGAGAACAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAATATGATCCCTGGGATCTTCCAAAAGCTAGTGGTTTAGTTGGGGAGAAGGAGTGGTACTTCTTTTGCAGAAGGGGAAAGAAATACAGAAATAGCATAAGACCTAATAGGGTCACAAAATCTGGGTTTTGGAAAGCAACCGGCATTGACAAACCTGTATATTCGGTTGGAGGAGAATTTCACACTTGCATTGGCTTAAAGAAATCCCTAGTATACTATAGAGGAAGTGCTGGAAAGGGTACCAAAACAGAGTGGATGATGCACGAATTTCGTCTTCCAGCTACTAATGCAAGCACTGGTGCTAATTCTAATATCAATGACATTACTCAAGAAGCTGAAGTTTGGACCCTATGCAGAATTTTGAAACGAAACAATTCTTCTAGAAAGGATGAAACAAATTGGCAGAAGACAACTTCCAAGCAAAGTGCAGCTGACTCAAGTTCGAAAACATGCAGTTCTGAGTCGGATGGAAGTTTTGGTGCTCTGGCTGCTCAGAAGAATGATCAACTTGAAAGGATCACTACTCCTAATTTTAACAATGATCATCTGTGCGAAGGGAACAATCATATCTCAGCAGGCCAGCTGACCTTAAAAGATGAAGTAGTTGATCCAATGGTGAACTCATACATAAACTTCTGGAATCTAAATGAATATGAGATGTTAAGATCAGATAATCCCAACTGGGATGAGCTGAGTCCAATGATCGACTGCGTTCTAAATCCCTCCCCGCTATATCGATCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

307

Amino Acids

35.36

Weight (kDa)

8.39

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 151	3.8e-45	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43000 AT2G43000
fragaria_vesca	FvH4_3g11860 FvH4_6g38750
malus_domestica	MD05G1258300.v1.1 MD09G1147500.v1.1 MD09G1147600.v1.1 MD10G1238200.v1.1 MD17G1134400.v1.1
prunus_persica	Prupe.3G178000_v2.0.a1 Prupe.3G178000_v2.0.a1 Prupe.4G106100_v2.0.a1 Prupe.4G106100_v2.0.a1
pyrus_communis	pycom05g24310 pycom09g06780 pycom10g19920 pycom17g12860
rosa_chinensis	RchiOBHm_Chr2g0152271 RchiOBHm_Chr2g0152301 RchiOBHm_Chr5g0019291
rosa_laevigata	RLG00000020626 RLG00000032435
rosa_multiflora	Rmu_sc0004002.1_g000004 Rmu_sc0004608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00058710 Rroxscaffold_1G00074210 Rroxscaffold_2G00095810
rosa_rugosa	Rorug02G0431900 Rorug05G0049400
rosa_samantha	Rh2AG493700 Rh2BG506000 Rh2CG479900 Rh2DG517100 Rh5AG140500 Rh5CG150800 Rh5DG140000
rosa_wichuraiana	Rw2G040600 Rw5G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	1 cut(s)	905
AclWI	GGATC	4 cut(s)	179, 201, 701, 779
AcsI	RAATTY	3 cut(s)	353, 443, 534
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	236, 418
AgsI	TTSAA	2 cut(s)	541, 689
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	7 cut(s)	154, 206, 458, 512, 608, 760, 868
AluI	AGCT	7 cut(s)	154, 206, 458, 512, 608, 760, 868
Alw21I	GWGCWC	2 cut(s)	156, 661
AlwI	GGATC	4 cut(s)	179, 201, 701, 779
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	2 cut(s)	605, 665
ApoI	RAATTY	3 cut(s)	353, 443, 534
Asp700I	GAANNNNTTC	1 cut(s)	550
Asp718I	GGTACC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	805
AsuII	TTCGAA	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	522
AxyI	CCTNAGG	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BbsI	GAAGAC	2 cut(s)	443, 590
Bbv12I	GWGCWC	2 cut(s)	156, 661
BbvI	GCAGC	2 cut(s)	617, 652
BccI	CCATC	1 cut(s)	638
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	2 cut(s)	679, 718
BcnI	CCSGG	1 cut(s)	69
BfaI	CTAG	3 cut(s)	207, 386, 558
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	2 cut(s)	606, 666
BlsI	GCNGC	2 cut(s)	607, 667
Bme1390I	CCNGG	2 cut(s)	69, 190
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	418, 524
BmrFI	CCNGG	2 cut(s)	69, 190
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	2 cut(s)	43, 426
BmuI	ACTGGG	1 cut(s)	868
BpiI	GAAGAC	2 cut(s)	443, 590
Bpu14I	TTCGAA	1 cut(s)	620
BpuEI	CTTGAG	3 cut(s)	170, 489, 598
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	913
BsaJI	CCNNGG	3 cut(s)	68, 188, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	478, 863
Bse21I	CCTNAGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	3 cut(s)	68, 188, 189
BseGI	GGATG	6 cut(s)	55, 82, 438, 571, 649, 868
BseMII	CTCAG	5 cut(s)	130, 627, 683, 762, 860
BseNI	ACTGG	2 cut(s)	478, 863
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	617, 652
BsgI	GTGCAG	2 cut(s)	29, 624
Bsh1285I	CGRYCG	1 cut(s)	917
BshFI	GGCC	1 cut(s)	756
BshNI	GGYRCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	917
BsiHKAI	GWGCWC	2 cut(s)	156, 661
BsiSI	CCGG	2 cut(s)	68, 318
BsnI	GGCC	1 cut(s)	756
Bsp119I	TTCGAA	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	156, 661
Bsp143I	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
BspACI	CCGC	1 cut(s)	905
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	5 cut(s)	129, 628, 682, 761, 861
BspDI	ATCGAT	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	418, 524
BspPI	GGATC	4 cut(s)	179, 201, 701, 779
BspT104I	TTCGAA	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	478, 863
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	68, 188, 189
BssMI	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
BssNAI	GTATAC	1 cut(s)	391
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	469, 754, 758
BstDEI	CTNAG	6 cut(s)	45, 116, 636, 669, 748, 869
BstF5I	GGATG	6 cut(s)	55, 82, 438, 571, 649, 868
BstKTI	GATC	9 cut(s)	187, 196, 682, 696, 721, 787, 845, 882, 917
BstMBI	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
BstMCI	CGRYCG	1 cut(s)	917
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 665
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	67, 188
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	617, 652
BstV2I	GAAGAC	2 cut(s)	443, 590
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BstZ17I	GTATAC	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	913
Bsu36I	CCTNAGG	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	913
BtsCI	GGATG	6 cut(s)	55, 82, 438, 571, 649, 868
BtsIMutI	CAGTG	2 cut(s)	87, 471
Cac8I	GCNNGC	3 cut(s)	469, 754, 758
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	913
Csp6I	GTAC	2 cut(s)	235, 417
CviAII	CATG	1 cut(s)	627
CviQI	GTAC	2 cut(s)	235, 417
DdeI	CTNAG	6 cut(s)	45, 116, 636, 669, 748, 869
DpnI	GATC	9 cut(s)	186, 195, 681, 695, 720, 786, 844, 881, 916
DpnII	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	630
FatI	CATG	1 cut(s)	626
FauI	CCCGC	1 cut(s)	912
FbaI	TGATCA	2 cut(s)	679, 718
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	606, 666
FokI	GGATG	6 cut(s)	62, 69, 445, 578, 656, 875
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	606, 666
FspBI	CTAG	3 cut(s)	207, 386, 558
GluI	GCNGC	2 cut(s)	606, 666
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	2 cut(s)	68, 318
Hin1II	CATG	1 cut(s)	630
HinfI	GANTC	5 cut(s)	29, 611, 638, 817, 871
HpaII	CCGG	2 cut(s)	68, 318
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	2 cut(s)	391, 796
Hpy188I	TCNGA	4 cut(s)	637, 643, 672, 847
Hpy188III	TCNNGA	5 cut(s)	118, 149, 506, 558, 814
Hpy8I	GTNNAC	2 cut(s)	391, 796
HpyAV	CCTTC	4 cut(s)	118, 220, 243, 725
HpyCH4V	TGCA	9 cut(s)	10, 56, 246, 366, 439, 467, 531, 605, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 665
HpyF3I	CTNAG	6 cut(s)	45, 116, 636, 669, 748, 869
Hsp92II	CATG	1 cut(s)	630
KpnI	GGTACC	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	679, 718
Kzo9I	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
Lsp1109I	GCAGC	2 cut(s)	617, 652
LweI	GCATC	2 cut(s)	43, 426
MaeI	CTAG	3 cut(s)	207, 386, 558
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	9 cut(s)	186, 195, 681, 695, 720, 786, 844, 881, 916
MboI	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
MboII	GAAGA	8 cut(s)	25, 56, 107, 188, 443, 546, 595, 685
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	156, 661
MluCI	AATT	7 cut(s)	353, 443, 481, 534, 550, 574, 706
MlyI	GAGTC	3 cut(s)	605, 647, 880
MmeI	TCCRAC	2 cut(s)	325, 621
MnlI	CCTC	7 cut(s)	18, 99, 114, 125, 341, 392, 910
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	5 cut(s)	36, 374, 711, 767, 839
MspA1I	CMGCKG	2 cut(s)	608, 760
MspI	CCGG	2 cut(s)	68, 318
MspR9I	CCNGG	2 cut(s)	69, 190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	464, 665
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
NlaIII	CATG	1 cut(s)	630
NlaIV	GGNNCC	2 cut(s)	418, 524
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	620
PasI	CCCWGGG	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	29, 817
PkrI	GCNGC	2 cut(s)	607, 667
Ple19I	CGATCG	1 cut(s)	917
PleI	GAGTC	3 cut(s)	605, 646, 879
PpsI	GAGTC	3 cut(s)	605, 646, 879
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	418, 524
PspPI	GGNCC	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	193
PvuI	CGATCG	1 cut(s)	917
PvuII	CAGCTG	2 cut(s)	608, 760
RsaI	GTAC	2 cut(s)	236, 418
RsaNI	GTAC	2 cut(s)	235, 417
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	36, 374, 711, 767, 839
SatI	GCNGC	2 cut(s)	606, 666
Sau3AI	GATC	9 cut(s)	184, 193, 679, 693, 718, 784, 842, 879, 914
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	3 cut(s)	605, 647, 880
ScrFI	CCNGG	2 cut(s)	69, 190
SduI	GDGCHC	2 cut(s)	156, 661
SfaNI	GCATC	2 cut(s)	43, 426
SfcI	CTRYAG	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	620
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	149, 504, 613
SmoI	CTYRAG	3 cut(s)	149, 504, 613
Sse9I	AATT	7 cut(s)	353, 443, 481, 534, 550, 574, 706
SsiI	CCGC	1 cut(s)	905
SspMI	CTAG	3 cut(s)	207, 386, 558
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	67, 188
TaqI	TCGA	4 cut(s)	32, 620, 882, 913
TasI	AATT	7 cut(s)	353, 443, 481, 534, 550, 574, 706
TfiI	GAWTC	2 cut(s)	29, 817
Tru1I	TTAA	5 cut(s)	36, 374, 711, 767, 839
Tru9I	TTAA	5 cut(s)	36, 374, 711, 767, 839
TscAI	CASTG	2 cut(s)	94, 478
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	605, 665
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	5 cut(s)	71, 108, 582, 789, 840
TspRI	CASTG	2 cut(s)	94, 478
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	3 cut(s)	353, 443, 534
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	550
XspI	CTAG	3 cut(s)	207, 386, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.