Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

18078649 .. 18080094

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCTCACAAAAATCTTCTTAATCCTTCTCCTATCCCTCTTAGGTTTATATTCTGAAACCGTCAAATCTCAAAACTGCGATTGCGCCCCTAACCTATGTTGCAGTCAGTTCGGTTATTGCGGTACCACTGCAGATTACTGTGGTTCTACGTGCCAATCAGGTCCTTGTAGAGTCGGTGGACCCCCTACCGGTGCCGGTTTGGTTGGTAATATCGTGACACAAATTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGATGCGCGGGAAAAAGTTTTTACACCCGGGACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAAGAGATAAACGGGGCGTCACGTGTCATGTGCGACCAGAACAACAGGCAATATCCATGTGCACCGGCCAAGAGCTACCATGGCCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGAGCATGCGGCCAGAGTCTCGGCTTAGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAACCCAGTCGTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGAAGAGCGTGAGGCCTGTATTGAACCAGGGATTTGGAGCCACCATAAGAGCCATCAGCGGTTTCGACTGTGACGGTAGGAACTTAGGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGGGCAGCTTGGTTTGGACCCTGGCGCCAACATAACTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

265

Amino Acids

28.78

Weight (kDa)

8.31

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	25 - 57	1.3e-09	Chitin recognition protein
Glyco_hydro_19	PF00182	72 - 212	2.4e-34	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	3 cut(s)	125, 194, 779
AccBSI	CCGCTC	1 cut(s)	502
AccII	CGCG	1 cut(s)	269
AciI	CCGC	5 cut(s)	123, 269, 500, 537, 687
AcoI	YGGCCR	3 cut(s)	474, 490, 538
AcsI	RAATTY	1 cut(s)	225
AcvI	CACGTG	1 cut(s)	431
AcyI	GRCGYC	2 cut(s)	425, 780
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	191, 598
AflIII	ACRYGT	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	523, 652
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	654, 775
AluBI	AGCT	4 cut(s)	327, 483, 577, 763
AluI	AGCT	4 cut(s)	327, 483, 577, 763
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	3 cut(s)	380, 551, 741
Alw44I	GTGCAC	1 cut(s)	468
Ama87I	CYCGRG	2 cut(s)	288, 572
AoxI	GGCC	4 cut(s)	474, 490, 538, 641
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	1 cut(s)	225
AsiGI	ACCGGT	1 cut(s)	191
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	89, 269, 782
AspS9I	GGNCC	4 cut(s)	164, 182, 497, 772
AsuC2I	CCSGG	2 cut(s)	289, 290
AsuHPI	GGTGA	2 cut(s)	592, 733
AvaI	CYCGRG	2 cut(s)	288, 572
AvaII	GGWCC	4 cut(s)	164, 182, 497, 772
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	3 cut(s)	125, 194, 779
BbrPI	CACGTG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	477, 627
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	2 cut(s)	656, 777
BcnI	CCSGG	2 cut(s)	289, 290
BcoDI	GTCTC	3 cut(s)	380, 551, 741
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	132, 742
BfoI	RGCGCY	1 cut(s)	783
BisI	GCNGC	2 cut(s)	538, 761
BlsI	GCNGC	2 cut(s)	539, 762
Bme1390I	CCNGG	4 cut(s)	289, 290, 656, 777
Bme18I	GGWCC	4 cut(s)	164, 182, 497, 772
BmeT110I	CYCGRG	2 cut(s)	288, 572
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	4 cut(s)	164, 182, 497, 772
BmiI	GGNNCC	6 cut(s)	127, 184, 196, 667, 774, 781
BmrFI	CCNGG	4 cut(s)	289, 290, 656, 777
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	587
BpuMI	CCSGG	2 cut(s)	289, 290
BsaAI	YACGTR	2 cut(s)	153, 431
BsaHI	GRCGYC	2 cut(s)	425, 780
BsaJI	CCNNGG	5 cut(s)	288, 487, 493, 655, 775
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 598
Bse118I	RCCGGY	4 cut(s)	191, 197, 254, 472
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	656, 777
BseDI	CCNNGG	5 cut(s)	288, 487, 493, 655, 775
BseGI	GGATG	2 cut(s)	269, 633
BseLI	CCNNNNNNNGG	2 cut(s)	191, 598
BseNI	ACTGG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	772
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	476, 492, 540, 643
BshNI	GGYRCC	3 cut(s)	125, 194, 779
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	2 cut(s)	288, 572
BsiSI	CCGG	5 cut(s)	192, 198, 255, 289, 473
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	191, 598
BsmAI	GTCTC	3 cut(s)	380, 551, 741
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	476, 492, 540, 643
BsoBI	CYCGRG	2 cut(s)	288, 572
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	5 cut(s)	123, 269, 500, 537, 687
BspANI	GGCC	4 cut(s)	476, 492, 540, 643
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	6 cut(s)	127, 184, 196, 667, 774, 781
BspMAI	CTGCAG	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	3 cut(s)	125, 194, 779
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	4 cut(s)	191, 197, 254, 472
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	4 cut(s)	191, 197, 254, 472
BssECI	CCNNGG	5 cut(s)	288, 487, 493, 655, 775
BssNI	GRCGYC	2 cut(s)	425, 780
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	656, 777
Bst4CI	ACNGT	5 cut(s)	64, 143, 340, 698, 704
Bst6I	CTCTTC	2 cut(s)	405, 626
BstACI	GRCGYC	2 cut(s)	425, 780
BstBAI	YACGTR	2 cut(s)	153, 431
BstC8I	GCNNGC	2 cut(s)	535, 569
BstDEI	CTNAG	3 cut(s)	43, 553, 712
BstDSI	CCRYGG	2 cut(s)	487, 493
BstF5I	GGATG	2 cut(s)	269, 633
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	3 cut(s)	89, 269, 782
BstMAI	GTCTC	3 cut(s)	380, 551, 741
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	2 cut(s)	656, 777
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	287, 288, 654, 775
BstSFI	CTRYAG	2 cut(s)	132, 742
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	772
BstXI	CCANNNNNNTGG	2 cut(s)	494, 662
BsuRI	GGCC	4 cut(s)	476, 492, 540, 643
BtgI	CCRYGG	2 cut(s)	487, 493
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	269, 633
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	535, 569
CfoI	GCGC	3 cut(s)	89, 269, 782
Cfr10I	RCCGGY	4 cut(s)	191, 197, 254, 472
Cfr13I	GGNCC	4 cut(s)	164, 182, 497, 772
Cfr9I	CCCGGG	1 cut(s)	288
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	126
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	6 cut(s)	364, 436, 465, 488, 513, 534
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	3 cut(s)	43, 553, 712
DinI	GGCGCC	1 cut(s)	781
EaeI	YGGCCR	3 cut(s)	474, 490, 538
Eam1104I	CTCTTC	2 cut(s)	405, 626
EarI	CTCTTC	2 cut(s)	405, 626
Eco130I	CCWWGG	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	643
Eco47I	GGWCC	4 cut(s)	164, 182, 497, 772
Eco72I	CACGTG	1 cut(s)	431
Eco88I	CYCGRG	2 cut(s)	288, 572
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	654, 775
EcoT14I	CCWWGG	1 cut(s)	487
EgeI	GGCGCC	1 cut(s)	781
EheI	GGCGCC	1 cut(s)	781
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	6 cut(s)	367, 439, 468, 491, 516, 537
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	6 cut(s)	363, 435, 464, 487, 512, 533
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	538, 761
FokI	GGATG	2 cut(s)	276, 640
Fsp4HI	GCNGC	2 cut(s)	538, 761
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	3 cut(s)	88, 268, 781
GluI	GCNGC	2 cut(s)	538, 761
GsaI	CCCAGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	4 cut(s)	476, 492, 540, 643
HapII	CCGG	5 cut(s)	192, 198, 255, 289, 473
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	3 cut(s)	89, 269, 782
Hin1I	GRCGYC	2 cut(s)	425, 780
Hin1II	CATG	6 cut(s)	367, 439, 468, 491, 516, 537
Hin6I	GCGC	3 cut(s)	87, 267, 780
HinP1I	GCGC	3 cut(s)	87, 267, 780
HinfI	GANTC	3 cut(s)	174, 293, 544
HpaII	CCGG	5 cut(s)	192, 198, 255, 289, 473
HphI	GGTGA	2 cut(s)	592, 733
Hpy166II	GTNNAC	3 cut(s)	182, 470, 724
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	217, 607
Hpy8I	GTNNAC	3 cut(s)	182, 470, 724
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	5 cut(s)	64, 143, 340, 698, 704
HpyCH4IV	ACGT	3 cut(s)	152, 349, 430
HpyCH4V	TGCA	3 cut(s)	105, 134, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	3 cut(s)	43, 553, 712
HpySE526I	ACGT	3 cut(s)	152, 349, 430
Hsp92I	GRCGYC	2 cut(s)	425, 780
Hsp92II	CATG	6 cut(s)	367, 439, 468, 491, 516, 537
HspAI	GCGC	3 cut(s)	87, 267, 780
KasI	GGCGCC	1 cut(s)	779
KpnI	GGTACC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	3 cut(s)	507, 530, 665
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	3 cut(s)	152, 349, 430
MaeIII	GTNAC	5 cut(s)	217, 340, 426, 587, 698
MbiI	CCGCTC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	10, 422, 643
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	2 cut(s)	225, 354
Mly113I	GGCGCC	1 cut(s)	780
MlyI	GAGTC	3 cut(s)	183, 287, 553
MnlI	CCTC	3 cut(s)	50, 569, 633
MseI	TTAA	3 cut(s)	23, 234, 303
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	5 cut(s)	192, 198, 255, 289, 473
MspR9I	CCNGG	4 cut(s)	289, 290, 656, 777
MvaI	CCWGG	2 cut(s)	656, 777
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	489
NarI	GGCGCC	1 cut(s)	780
NciI	CCSGG	2 cut(s)	289, 290
NcoI	CCATGG	1 cut(s)	487
NlaIII	CATG	6 cut(s)	367, 439, 468, 491, 516, 537
NlaIV	GGNNCC	6 cut(s)	127, 184, 196, 667, 774, 781
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	3 cut(s)	217, 426, 698
NspI	RCATGY	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	626
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	539, 762
PleI	GAGTC	3 cut(s)	182, 287, 552
PluTI	GGCGCC	1 cut(s)	783
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
PpsI	GAGTC	3 cut(s)	182, 287, 552
Ppu21I	YACGTR	2 cut(s)	153, 431
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	654, 775
PspCI	CACGTG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	654, 775
PspN4I	GGNNCC	6 cut(s)	127, 184, 196, 667, 774, 781
PspPI	GGNCC	4 cut(s)	164, 182, 497, 772
PspPPI	RGGWCCY	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	3 cut(s)	23, 234, 303
SatI	GCNGC	2 cut(s)	538, 761
Sau96I	GGNCC	4 cut(s)	164, 182, 497, 772
SchI	GAGTC	3 cut(s)	183, 287, 553
ScrFI	CCNGG	4 cut(s)	289, 290, 656, 777
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	2 cut(s)	132, 742
SfoI	GGCGCC	1 cut(s)	781
SinI	GGWCC	4 cut(s)	164, 182, 497, 772
SmaI	CCCGGG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	492
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	2 cut(s)	225, 354
SseBI	AGGCCT	1 cut(s)	643
SsiI	CCGC	5 cut(s)	123, 269, 500, 537, 687
SspDI	GGCGCC	1 cut(s)	779
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	4 cut(s)	287, 288, 654, 775
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	5 cut(s)	64, 143, 340, 698, 704
TaiI	ACGT	3 cut(s)	155, 352, 433
TaqI	TCGA	1 cut(s)	693
TasI	AATT	2 cut(s)	225, 354
TauI	GCSGC	1 cut(s)	540
Tru1I	TTAA	3 cut(s)	23, 234, 303
Tru9I	TTAA	3 cut(s)	23, 234, 303
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	3 cut(s)	217, 426, 698
TseI	GCWGC	1 cut(s)	760
Tsp45I	GTSAC	3 cut(s)	217, 426, 698
TspDTI	ATGAA	2 cut(s)	289, 644
TspMI	CCCGGG	1 cut(s)	288
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	4 cut(s)	164, 182, 497, 772
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	288
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.