Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

14349198 .. 14350693

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTAATTTCCAAGCTGCAGTCGTGACAATCCTAGGACTATTAGCATTTGTAGCCCAAATTGCCACGGCTCAAAACTCGGTGGCAGATATCGTGACTGCCGACTTCTTTAACGGGATTATTAACCAGGCTGCCGCTGACTGCACCGGCAAGAGCTTCTACACCAGACAGGCTTTTCTCGACGCCCTTGCCTCTTACACCGATTTCGCTACCACCGGCTCTGCTGATGACAATAAACGCGAAATTGCAGCTTTCTTTGCTCATGTCACTCATGAGACTGGCCACTTTTGCTACATAGAAGAGATAAATAAGGACACCTACTGCGACGGAAGCAGAACAGACTACCCATGCAACCCTGCCAAGCAGTACTACGGGCGCGGACCACTCCAACTCACCTGGAACTACAACTACGGAGCTGCCGGAAATGCCATAGGCTTTGACGGTTTGAACTCCCCAGAAACGGTGGCTTCAGACCCGGTCATCGCGTTCAAGACAGGCCTGTGGTTTTGGATGAACAATGTTCACTCTGTTATAAGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGCCGTCGAATGTGATGGCAAATCTCCGGACACTGTTCAAGCTCGCGTCAACTATTACACTGACTACTGTACCCAATTCAATGTTGCTCCCGGTGACAATCTCTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

228

Amino Acids

24.66

Weight (kDa)

4.59

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	31 - 173	6.3e-40	Chitinase class I
Glyco_hydro_19	PF00182	180 - 227	2.2e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	4 cut(s)	240, 378, 485, 618
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	2 cut(s)	135, 378
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	368, 643
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	448, 490, 611, 652
AjnI	CCWGG	2 cut(s)	126, 395
AluBI	AGCT	5 cut(s)	17, 156, 251, 416, 614
AluI	AGCT	5 cut(s)	17, 156, 251, 416, 614
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	558
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	2 cut(s)	280, 496
ApeKI	GCWGC	4 cut(s)	17, 131, 248, 416
AspA2I	CCTAGG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	2 cut(s)	476, 663
AsuHPI	GGTGA	2 cut(s)	385, 677
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	380
AvrII	CCTAGG	1 cut(s)	34
BaeI	ACNNNNGTAYC	2 cut(s)	625, 658
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	4 cut(s)	4, 118, 260, 403
BccI	CCATC	2 cut(s)	572, 581
BceAI	ACGGC	2 cut(s)	84, 560
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	2 cut(s)	128, 397
BcnI	CCSGG	2 cut(s)	476, 663
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	35, 682
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	5 cut(s)	18, 132, 135, 249, 417
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	5 cut(s)	19, 133, 136, 250, 418
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	4 cut(s)	128, 397, 476, 663
Bme18I	GGWCC	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	550, 574
BmrFI	CCNGG	4 cut(s)	128, 397, 476, 663
BpuMI	CCSGG	2 cut(s)	476, 663
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	34, 66, 538
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	2 cut(s)	146, 215
Bse1I	ACTGG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	128, 397
BseDI	CCNNGG	3 cut(s)	34, 66, 538
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	4 cut(s)	4, 118, 260, 403
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	4 cut(s)	240, 378, 485, 618
BshFI	GGCC	2 cut(s)	282, 498
BshNI	GGYRCC	1 cut(s)	572
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	6 cut(s)	147, 216, 420, 476, 599, 663
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	282, 498
BsoBI	CYCGRG	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	598
BspACI	CCGC	2 cut(s)	135, 378
BspANI	GGCC	2 cut(s)	282, 498
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	4 cut(s)	240, 378, 485, 618
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	550, 574
BspMAI	CTGCAG	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	572
BsrFI	RCCGGY	2 cut(s)	146, 215
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	2 cut(s)	146, 215
BssECI	CCNNGG	3 cut(s)	34, 66, 538
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	34, 538
Bst2UI	CCWGG	2 cut(s)	128, 397
Bst4CI	ACNGT	5 cut(s)	443, 463, 572, 607, 641
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	4 cut(s)	240, 378, 485, 618
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 62, 257, 288, 330, 425
BstNI	CCWGG	2 cut(s)	128, 397
BstSCI	CCNGG	4 cut(s)	126, 395, 474, 661
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	4 cut(s)	240, 378, 485, 618
BstV1I	GCAGC	4 cut(s)	4, 118, 260, 403
BsuRI	GGCC	2 cut(s)	282, 498
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	603, 630
Cac8I	GCNNGC	1 cut(s)	616
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	2 cut(s)	146, 215
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	2 cut(s)	191, 607
Csp6I	GTAC	2 cut(s)	367, 642
CviAII	CATG	3 cut(s)	263, 272, 348
CviQI	GTAC	2 cut(s)	367, 642
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	34, 538
Eco147I	AGGCCT	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	126, 395
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	34, 538
ErhI	CCWWGG	2 cut(s)	34, 538
FaeI	CATG	3 cut(s)	266, 275, 351
FaiI	YATR	6 cut(s)	264, 273, 296, 349, 431, 533
FatI	CATG	3 cut(s)	262, 271, 347
Fnu4HI	GCNGC	5 cut(s)	18, 132, 135, 249, 417
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	5 cut(s)	18, 132, 135, 249, 417
FspBI	CTAG	2 cut(s)	35, 682
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	5 cut(s)	18, 132, 135, 249, 417
HaeIII	GGCC	2 cut(s)	282, 498
HapII	CCGG	6 cut(s)	147, 216, 420, 476, 599, 663
HgaI	GACGC	2 cut(s)	191, 607
HhaI	GCGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	266, 275, 351
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	1 cut(s)	543
HpaII	CCGG	6 cut(s)	147, 216, 420, 476, 599, 663
HphI	GGTGA	2 cut(s)	385, 677
Hpy166II	GTNNAC	2 cut(s)	523, 622
Hpy188I	TCNGA	2 cut(s)	472, 548
Hpy188III	TCNNGA	6 cut(s)	25, 94, 179, 272, 490, 599
Hpy8I	GTNNAC	2 cut(s)	523, 622
Hpy99I	CGWCG	3 cut(s)	185, 329, 581
HpyCH4III	ACNGT	5 cut(s)	443, 463, 572, 607, 641
HpyCH4V	TGCA	4 cut(s)	20, 144, 248, 351
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 62, 257, 288, 330, 425
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	266, 275, 351
HspAI	GCGC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	598
LmnI	GCTCC	3 cut(s)	413, 548, 664
Lsp1109I	GCAGC	4 cut(s)	4, 118, 260, 403
MaeI	CTAG	2 cut(s)	35, 682
MaeIII	GTNAC	4 cut(s)	25, 94, 265, 665
MboII	GAAGA	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	4 cut(s)	7, 60, 243, 647
MluNI	TGGCCA	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	2 cut(s)	111, 123
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	6 cut(s)	147, 216, 420, 476, 599, 663
MspR9I	CCNGG	4 cut(s)	128, 397, 476, 663
MvaI	CCWGG	2 cut(s)	128, 397
MvnI	CGCG	4 cut(s)	240, 378, 485, 618
MwoI	GCNNNNNNNGC	6 cut(s)	53, 62, 257, 288, 330, 425
NciI	CCSGG	2 cut(s)	476, 663
NlaIII	CATG	3 cut(s)	266, 275, 351
NlaIV	GGNNCC	2 cut(s)	550, 574
NmuCI	GTSAC	4 cut(s)	25, 94, 265, 665
PaeR7I	CTCGAG	1 cut(s)	558
PagI	TCATGA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 576
PfeI	GAWTC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	19, 133, 136, 250, 418
PsiI	TTATAA	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	126, 395
PspGI	CCWGG	2 cut(s)	126, 395
PspN4I	GGNNCC	2 cut(s)	550, 574
PspPI	GGNCC	1 cut(s)	380
PspXI	VCTCGAGB	1 cut(s)	558
PsrI	GAACNNNNNNTAC	2 cut(s)	392, 424
PstI	CTGCAG	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	2 cut(s)	368, 643
RsaNI	GTAC	2 cut(s)	367, 642
SaqAI	TTAA	2 cut(s)	111, 123
SatI	GCNGC	5 cut(s)	18, 132, 135, 249, 417
Sau96I	GGNCC	1 cut(s)	380
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	128, 397, 476, 663
SetI	ASST	7 cut(s)	19, 158, 253, 320, 398, 418, 616
SfcI	CTRYAG	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	7, 60, 243, 647
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	2 cut(s)	135, 378
SspMI	CTAG	2 cut(s)	35, 682
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	126, 395, 474, 661
StyI	CCWWGG	2 cut(s)	34, 538
TaaI	ACNGT	5 cut(s)	443, 463, 572, 607, 641
TaqI	TCGA	3 cut(s)	180, 559, 579
TasI	AATT	4 cut(s)	7, 60, 243, 647
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	2 cut(s)	111, 123
Tru9I	TTAA	2 cut(s)	111, 123
TscAI	CASTG	2 cut(s)	610, 637
TseFI	GTSAC	4 cut(s)	25, 94, 265, 665
TseI	GCWGC	4 cut(s)	17, 131, 248, 416
Tsp45I	GTSAC	4 cut(s)	25, 94, 265, 665
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	2 cut(s)	342, 426
TspRI	CASTG	2 cut(s)	610, 637
Tth111I	GACNNNGTC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	558
XmaJI	CCTAGG	1 cut(s)	34
XspI	CTAG	2 cut(s)	35, 682
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.