Rh5DG101500

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001782
Physical Location & Seq
Forward (+)
9263905 .. 9264954
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG101500.1

Sequence Viewer

Length: 807 bp
ATGACAATTAGGACAAAATCCCTCTTTTTCACCATCCTAGGCCTAGCATTTGTAGCCCGAATTGCAATAGCTCAAAACTGCGGGTGTGCCGCAAACCTGTGTTGCAGCGAATTTGGTTATTGCGGCACCAGCAAGGCCTACTGCGGCAAGGGTTGTCAAGCAGGACCTTGTACTACCACCACTCCTACACCAACTACTAACGGTGACTCGGTGGCGAACATTGTGACCACTAAATTCTTTAATGGGATTATTAACCAGGCTGCCGCTAACTGTGCCGGGAAGAGCTTCTACACCAGACAGGCTTTTCTCAATGCCCTCGGCTCTTACGGCAATTTTGGTACCAGCGGTTCCGCTGAAAAGGATAAGCGGGAGATTGCAGCTTTCTTTGCTCAGGTCACTCATGAGACTGGCCATTTTTGCTACATAGAAGAGATAAATCGCGGAACCTACTGCAAGAGAAGTACAGACTACCCATGCAACCCTCAAAAGAAGTACTATGGGCGAGGACCACTCCAACTCACCTGGAACTACAATTACGGAGCTGCCGGAAAAGCTATTGGCTTTGACGGCTTAAACTCCCCTGAAAAGGTAGCTTCAGACCCTGTGGTGGCGTTCAAGGCGAGCTTATGGTTTTGGATGAACAATGTTCACTCTGTTCTAAGCCAAGGATTTGGAGCCACAACTCGAGCCATCAACAGTGGGGAATGTGGTGGCGGAGCCCCAAATAAAGTTCAAGCTCGCATCAACTATTACAAGCAGTATTGCACCCAACTTAATGTTTCTCCGGGTGACAATCTCTATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

268

Amino Acids

28.9

Weight (kDa)

8.91

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chitin_bind_1 PF00187 26 - 57 2.7e-08 Chitin recognition protein
Glyco_hydro_19 PF00182 74 - 215 8.6e-43 Chitinase class I
Glyco_hydro_19 PF00182 222 - 268 4.2e-09 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 125, 338
AccII CGCG 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 110, 233
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 4 cut(s) 172, 340, 463, 494
AfiI CCNNNNNNNGG 2 cut(s) 586, 607
AgsI TTSAA 2 cut(s) 616, 734
AjnI CCWGG 2 cut(s) 255, 521
AluBI AGCT 8 cut(s) 71, 285, 380, 542, 554, 593, 624, 737
AluI AGCT 8 cut(s) 71, 285, 380, 542, 554, 593, 624, 737
Alw26I GTCTC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 684
AoxI GGCC 3 cut(s) 40, 135, 409
ApeKI GCWGC 4 cut(s) 105, 260, 377, 542
ApoI RAATTY 2 cut(s) 110, 233
Asp700I GAANNNNTTC 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 164, 506
AsuC2I CCSGG 2 cut(s) 277, 786
AsuHPI GGTGA 4 cut(s) 22, 215, 511, 800
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 2 cut(s) 164, 506
AvrII CCTAGG 1 cut(s) 37
BalI TGGCCA 1 cut(s) 411
BanI GGYRCC 2 cut(s) 125, 338
BanII GRGCYC 1 cut(s) 721
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 4 cut(s) 117, 247, 389, 529
BccI CCATC 2 cut(s) 41, 698
BceAI ACGGC 2 cut(s) 343, 583
BciT130I CCWGG 2 cut(s) 257, 523
BcnI CCSGG 2 cut(s) 277, 786
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 2 cut(s) 38, 44
BisI GCNGC 8 cut(s) 90, 106, 124, 145, 261, 264, 378, 543
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 8 cut(s) 91, 107, 125, 146, 262, 265, 379, 544
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 4 cut(s) 257, 277, 523, 786
Bme18I GGWCC 2 cut(s) 164, 506
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 164, 506
BmiI GGNNCC 6 cut(s) 127, 340, 349, 445, 676, 718
BmrFI CCNGG 4 cut(s) 257, 277, 523, 786
BmsI GCATC 1 cut(s) 750
BplI GAGNNNNNCTC 2 cut(s) 495, 527
Bpu10I CCTNAGC 1 cut(s) 390
BpuMI CCSGG 2 cut(s) 277, 786
BsaJI CCNNGG 3 cut(s) 37, 316, 664
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 607
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 257, 523
BseDI CCNNGG 3 cut(s) 37, 316, 664
BseGI GGATG 2 cut(s) 33, 642
BseLI CCNNNNNNNGG 2 cut(s) 586, 607
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 4 cut(s) 117, 247, 389, 529
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 3 cut(s) 42, 137, 411
BshNI GGYRCC 2 cut(s) 125, 338
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 3 cut(s) 276, 546, 785
BslI CCNNNNNNNGG 2 cut(s) 586, 607
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 3 cut(s) 42, 137, 411
BsoBI CYCGRG 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 721
BspANI GGCC 3 cut(s) 42, 137, 411
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 6 cut(s) 127, 340, 349, 445, 676, 718
BspQI GCTCTTC 1 cut(s) 275
BspT107I GGYRCC 2 cut(s) 125, 338
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 3 cut(s) 37, 316, 664
BssT1I CCWWGG 2 cut(s) 37, 664
Bst2UI CCWGG 2 cut(s) 257, 523
Bst4CI ACNGT 3 cut(s) 203, 272, 698
Bst6I CTCTTC 2 cut(s) 275, 423
BstC8I GCNNGC 2 cut(s) 622, 739
BstDEI CTNAG 2 cut(s) 390, 659
BstF5I GGATG 2 cut(s) 33, 642
BstFNI CGCG 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 398
BstNI CCWGG 2 cut(s) 257, 523
BstSCI CCNGG 4 cut(s) 255, 275, 521, 784
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 117, 247, 389, 529
BstXI CCANNNNNNTGG 1 cut(s) 671
BsuRI GGCC 3 cut(s) 42, 137, 411
BtsCI GGATG 2 cut(s) 33, 642
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 622, 739
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 164, 506
Csp6I GTAC 4 cut(s) 171, 339, 462, 493
CviAII CATG 2 cut(s) 401, 474
CviQI GTAC 4 cut(s) 171, 339, 462, 493
DdeI CTNAG 2 cut(s) 390, 659
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 275, 423
EarI CTCTTC 2 cut(s) 275, 423
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 37, 664
Eco147I AGGCCT 2 cut(s) 42, 137
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 164, 506
Eco57I CTGAAG 1 cut(s) 579
Eco88I CYCGRG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 255, 521
EcoT14I CCWWGG 2 cut(s) 37, 664
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 2 cut(s) 37, 664
FaeI CATG 2 cut(s) 404, 477
FaiI YATR 5 cut(s) 402, 425, 475, 498, 628
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 2 cut(s) 400, 473
FauI CCCGC 2 cut(s) 74, 360
Fnu4HI GCNGC 8 cut(s) 90, 106, 124, 145, 261, 264, 378, 543
FokI GGATG 2 cut(s) 20, 649
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 8 cut(s) 90, 106, 124, 145, 261, 264, 378, 543
FspBI CTAG 2 cut(s) 38, 44
GluI GCNGC 8 cut(s) 90, 106, 124, 145, 261, 264, 378, 543
HaeIII GGCC 3 cut(s) 42, 137, 411
HapII CCGG 3 cut(s) 276, 546, 785
Hin1II CATG 2 cut(s) 404, 477
HinfI GANTC 1 cut(s) 206
HpaII CCGG 3 cut(s) 276, 546, 785
HphI GGTGA 4 cut(s) 22, 215, 511, 800
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 1 cut(s) 598
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 649
HpyCH4III ACNGT 3 cut(s) 203, 272, 698
HpyCH4V TGCA 6 cut(s) 65, 105, 377, 453, 477, 765
HpyF3I CTNAG 2 cut(s) 390, 659
Hsp92II CATG 2 cut(s) 404, 477
KpnI GGTACC 1 cut(s) 342
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 539, 674, 716
Lsp1109I GCAGC 4 cut(s) 117, 247, 389, 529
LweI GCATC 1 cut(s) 750
MaeI CTAG 2 cut(s) 38, 44
MaeIII GTNAC 4 cut(s) 203, 223, 394, 788
MboII GAAGA 2 cut(s) 292, 440
MhlI GDGCHC 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 6 cut(s) 6, 60, 110, 233, 331, 532
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 4 cut(s) 32, 326, 492, 497
Mox20I TGGCCA 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 411
MseI TTAA 4 cut(s) 240, 252, 572, 774
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 345, 353
MspI CCGG 3 cut(s) 276, 546, 785
MspR9I CCNGG 4 cut(s) 257, 277, 523, 786
MvaI CCWGG 2 cut(s) 257, 523
MvnI CGCG 1 cut(s) 441
NciI CCSGG 2 cut(s) 277, 786
NlaIII CATG 2 cut(s) 404, 477
NlaIV GGNNCC 6 cut(s) 127, 340, 349, 445, 676, 718
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 4 cut(s) 203, 223, 394, 788
PaeR7I CTCGAG 1 cut(s) 684
PagI TCATGA 1 cut(s) 400
PceI AGGCCT 2 cut(s) 42, 137
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 8 cut(s) 91, 107, 125, 146, 262, 265, 379, 544
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 255, 521
PspGI CCWGG 2 cut(s) 255, 521
PspN4I GGNNCC 6 cut(s) 127, 340, 349, 445, 676, 718
PspPI GGNCC 2 cut(s) 164, 506
PspPPI RGGWCCY 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 684
PsrI GAACNNNNNNTAC 4 cut(s) 331, 363, 518, 550
PstNI CAGNNNCTG 1 cut(s) 602
RsaI GTAC 4 cut(s) 172, 340, 463, 494
RsaNI GTAC 4 cut(s) 171, 339, 462, 493
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 240, 252, 572, 774
SatI GCNGC 8 cut(s) 90, 106, 124, 145, 261, 264, 378, 543
Sau96I GGNCC 2 cut(s) 164, 506
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 257, 277, 523, 786
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 684
SinI GGWCC 2 cut(s) 164, 506
SlaI CTCGAG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 6 cut(s) 6, 60, 110, 233, 331, 532
SseBI AGGCCT 2 cut(s) 42, 137
SspMI CTAG 2 cut(s) 38, 44
StuI AGGCCT 2 cut(s) 42, 137
StyD4I CCNGG 4 cut(s) 255, 275, 521, 784
StyI CCWWGG 2 cut(s) 37, 664
TaaI ACNGT 3 cut(s) 203, 272, 698
TaqI TCGA 1 cut(s) 685
TasI AATT 6 cut(s) 6, 60, 110, 233, 331, 532
TatI WGTACW 3 cut(s) 170, 461, 492
TauI GCSGC 4 cut(s) 92, 126, 147, 266
Tru1I TTAA 4 cut(s) 240, 252, 572, 774
Tru9I TTAA 4 cut(s) 240, 252, 572, 774
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 4 cut(s) 203, 223, 394, 788
TseI GCWGC 4 cut(s) 105, 260, 377, 542
Tsp45I GTSAC 4 cut(s) 203, 223, 394, 788
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 164, 506
XapI RAATTY 2 cut(s) 110, 233
XhoI CTCGAG 1 cut(s) 684
XmaJI CCTAGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 38, 44
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.