Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

767243 .. 792696

Gene Structure 25454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0012400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGCTGCTATCTAGTATCTACAATGGGAATTTGTTGAGGGGGCAATTGGCAAATGAAGGTACACCTTTGAAGCCTAGTCTAGAAGTCTATCTGTTAGCTCTTTTCAATGAGAGTATGAAGCCTGGACCAACTTCAGAGAGTAAATTTGGTCTCTATCAACCAAATGGAACTAGAACTCTGTCATATAGTAACAAAGACAAGTCTACTTTATCAAGGTTTGTGATGAATCAAGACAGCTCGGTTGTATATTTTACTTGGAAAGCAAGCAACTTTCAGTGGGGTGGTGTGGTGGCACTTCAACAAAGCACTTGCGACGGGAATGGGATCTGTGGTCCTTATGGCAGTTGTGGCTCCAAAGGCCCTAGTTGTGTGTGTTTGAAAGGATTTGCTCCCAAGTCACCAGAGGAATGGCAGATACTCACTGGACCGGAGGCTATGTGTGAGAATGGGACTTGGATTTTAAGAATGGAGATGGCTTTGGTAGGATTGCTATACATGCAAGAGGGGCAGACTGTGTTGTACGTGTGGTTTGATGAATTGGTTGATATGAGCAACTATCCGGATGGCGGGGAAGAGATTTATATTCGAATGGCAAGAACAGAACTAGGCGGTCCTGGAAATGAATTAGGAAAGCCGGTGGATGTGAATGAGGCAGCAGATCATATTTTTGGACTTGTCTTGATGAATGACTGGAGTGCTAGAGATATCCAGGCATGGGAATATATTCCCCTTGGTCCTTTCCTTGGAAAAAGTTTTGGAACTACAATATCTCCTTGGATAGTGACACTCGAAGCTCTAGAACCATTTTCCTGTGATGCTCCCAAACAGGACCCCCATCCATTGCCCTATCTGGCTGAAAAGATCTCCAAAAATTATGACATAAAATTGGAGGTTCAAATTAAACCAGCTGGAGAGAAAGACTCATCTGTGGTCACAAAGAGTAATTTCAACCACTTATATTGGACAGTGACTCAGCAGCTGGCACATCATACAATCAATGGTTGTAACTTAAGGCCTGGAGATCTCCTTGGAACTGGGACCATTAGTGGACCTGAGCCAGAATCTTATGGATGCTTGCTGGAGTTGACATGGAATGGACAAAAGCAGTTGTCATTAAATGGCGTTACTCGTAAATTCCTTGAAGATGGAGATGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAATGTTGGGTTCGGGACATGCTCTGGAAAGATTATTCCCCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

412

Amino Acids

45.22

Weight (kDa)

4.95

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	7 - 58	6.7e-06	Glycosyl hydrolases family 17
S_locus_glycop	PF00954	43 - 133	6.4e-17	S-locus glycoprotein domain
FAA_hydrolase	PF01557	213 - 390	2e-28	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	2 cut(s)	567, 609
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	28, 143, 1133
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	61, 521
AfiI	CCNNNNNNNGG	3 cut(s)	566, 715, 743
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	7 cut(s)	70, 106, 299, 379, 896, 949, 1142
AjnI	CCWGG	4 cut(s)	121, 613, 708, 1015
AluBI	AGCT	5 cut(s)	98, 237, 794, 908, 979
AluI	AGCT	5 cut(s)	98, 237, 794, 908, 979
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	979
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	2 cut(s)	358, 1013
ApeKI	GCWGC	3 cut(s)	4, 653, 976
ApoI	RAATTY	3 cut(s)	28, 143, 1133
Asp700I	GAANNNNTTC	1 cut(s)	723
AspS9I	GGNCC	9 cut(s)	125, 332, 359, 425, 611, 734, 829, 1038, 1049
AsuHPI	GGTGA	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	586
AvaII	GGWCC	8 cut(s)	125, 332, 425, 611, 734, 829, 1038, 1049
BbvI	GCAGC	2 cut(s)	665, 988
BccI	CCATC	4 cut(s)	466, 557, 843, 1139
BciT130I	CCWGG	4 cut(s)	123, 615, 710, 1017
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	8 cut(s)	12, 75, 80, 171, 363, 605, 699, 797
BfrI	CTTAAG	1 cut(s)	1009
BglII	AGATCT	2 cut(s)	861, 1021
BisI	GCNGC	3 cut(s)	5, 654, 977
BlsI	GCNGC	3 cut(s)	6, 655, 978
Bme1390I	CCNGG	4 cut(s)	123, 615, 710, 1017
Bme18I	GGWCC	8 cut(s)	125, 332, 425, 611, 734, 829, 1038, 1049
BmgT120I	GGNCC	9 cut(s)	125, 332, 359, 425, 611, 734, 829, 1038, 1049
BmiI	GGNNCC	3 cut(s)	352, 831, 1039
BmrFI	CCNGG	4 cut(s)	123, 615, 710, 1017
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	2 cut(s)	805, 1061
BmuI	ACTGGG	1 cut(s)	1044
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
BpmI	CTGGAG	4 cut(s)	712, 930, 1038, 1100
Bpu10I	CCTNAGC	1 cut(s)	1053
Bpu14I	TTCGAA	1 cut(s)	586
BsaAI	YACGTR	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	730, 742, 773, 1027
BsaWI	WCCGGW	2 cut(s)	427, 559
BsaXI	ACNNNNNCTCC	6 cut(s)	422, 452, 754, 784, 1140, 1170
Bsc4I	CCNNNNNNNGG	3 cut(s)	566, 715, 743
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	4 cut(s)	427, 695, 1039, 1171
Bse3DI	GCAATG	1 cut(s)	839
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	4 cut(s)	123, 615, 710, 1017
BseDI	CCNNGG	4 cut(s)	730, 742, 773, 1027
BseGI	GGATG	4 cut(s)	568, 646, 835, 1076
BseLI	CCNNNNNNNGG	3 cut(s)	566, 715, 743
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	986, 1044
BseNI	ACTGG	4 cut(s)	427, 695, 1039, 1171
BseXI	GCAGC	2 cut(s)	665, 988
BshFI	GGCC	2 cut(s)	360, 1015
BsiSI	CCGG	3 cut(s)	428, 560, 635
BslFI	GGGAC	3 cut(s)	463, 1051, 1219
BslI	CCNNNNNNNGG	3 cut(s)	566, 715, 743
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	3 cut(s)	463, 1051, 1219
BsnI	GGCC	2 cut(s)	360, 1015
Bso31I	GGTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	586
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	324, 658, 861, 1021
BspACI	CCGC	2 cut(s)	567, 609
BspANI	GGCC	2 cut(s)	360, 1015
BspCNI	CTCAG	2 cut(s)	985, 1045
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	352, 831, 1039
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	586
BspTI	CTTAAG	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	839
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	4 cut(s)	427, 695, 1039, 1171
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	4 cut(s)	730, 742, 773, 1027
BssMI	GATC	4 cut(s)	324, 658, 861, 1021
BssT1I	CCWWGG	4 cut(s)	730, 742, 773, 1027
Bst2UI	CCWGG	4 cut(s)	123, 615, 710, 1017
Bst4CI	ACNGT	2 cut(s)	514, 967
Bst6I	CTCTTC	1 cut(s)	567
BstAFI	CTTAAG	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	265, 981, 1076
BstDEI	CTNAG	2 cut(s)	972, 1053
BstF5I	GGATG	4 cut(s)	568, 646, 835, 1076
BstKTI	GATC	4 cut(s)	327, 661, 864, 1024
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	324, 658, 861, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	348, 357, 496, 505
BstNI	CCWGG	4 cut(s)	123, 615, 710, 1017
BstNSI	RCATGY	2 cut(s)	499, 1212
BstSCI	CCNGG	4 cut(s)	121, 613, 708, 1015
BstV1I	GCAGC	2 cut(s)	665, 988
BstX2I	RGATCY	3 cut(s)	324, 861, 1021
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	3 cut(s)	324, 861, 1021
BsuRI	GGCC	2 cut(s)	360, 1015
BtsCI	GGATG	4 cut(s)	568, 646, 835, 1076
BtsIMutI	CAGTG	3 cut(s)	281, 420, 972
Cac8I	GCNNGC	3 cut(s)	265, 981, 1076
CaiI	CAGNNNCTG	1 cut(s)	979
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	9 cut(s)	125, 332, 359, 425, 611, 734, 829, 1038, 1049
Csp6I	GTAC	2 cut(s)	60, 520
CspCI	CAANNNNNGTGG	2 cut(s)	941, 976
CviAII	CATG	4 cut(s)	496, 714, 1089, 1209
CviQI	GTAC	2 cut(s)	60, 520
DdeI	CTNAG	2 cut(s)	972, 1053
DpnI	GATC	4 cut(s)	326, 660, 863, 1023
DpnII	GATC	4 cut(s)	324, 658, 861, 1021
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	4 cut(s)	730, 742, 773, 1027
Eco147I	AGGCCT	1 cut(s)	1015
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	8 cut(s)	125, 332, 425, 611, 734, 829, 1038, 1049
Eco57I	CTGAAG	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	359, 829
EcoRII	CCWGG	4 cut(s)	121, 613, 708, 1015
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	4 cut(s)	730, 742, 773, 1027
ErhI	CCWWGG	4 cut(s)	730, 742, 773, 1027
FaeI	CATG	4 cut(s)	499, 717, 1092, 1212
FaqI	GGGAC	3 cut(s)	463, 1051, 1219
FatI	CATG	4 cut(s)	495, 713, 1088, 1208
FauI	CCCGC	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	5, 654, 977
FokI	GGATG	4 cut(s)	575, 653, 822, 1083
Fsp4HI	GCNGC	3 cut(s)	5, 654, 977
FspBI	CTAG	8 cut(s)	12, 75, 80, 171, 363, 605, 699, 797
GluI	GCNGC	3 cut(s)	5, 654, 977
GsuI	CTGGAG	4 cut(s)	712, 930, 1038, 1100
HaeIII	GGCC	2 cut(s)	360, 1015
HapII	CCGG	3 cut(s)	428, 560, 635
Hin1II	CATG	4 cut(s)	499, 717, 1092, 1212
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HinfI	GANTC	4 cut(s)	226, 920, 970, 1061
HpaII	CCGG	3 cut(s)	428, 560, 635
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	4 cut(s)	62, 204, 1049, 1086
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	7 cut(s)	80, 230, 560, 679, 797, 1204, 1215
Hpy8I	GTNNAC	4 cut(s)	62, 204, 1049, 1086
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	514, 967
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	348, 357, 496, 505
HpyF3I	CTNAG	2 cut(s)	972, 1053
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	499, 717, 1092, 1212
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	324, 658, 861, 1021
LmnI	GCTCC	3 cut(s)	356, 394, 823
Lsp1109I	GCAGC	2 cut(s)	665, 988
LweI	GCATC	2 cut(s)	805, 1061
MaeI	CTAG	8 cut(s)	12, 75, 80, 171, 363, 605, 699, 797
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	7 cut(s)	188, 396, 781, 931, 967, 1004, 1123
MalI	GATC	4 cut(s)	326, 660, 863, 1023
MboI	GATC	4 cut(s)	324, 658, 861, 1021
MboII	GAAGA	2 cut(s)	584, 1154
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	3 cut(s)	324, 861, 1021
MlyI	GAGTC	2 cut(s)	914, 964
MnlI	CCTC	6 cut(s)	30, 397, 424, 496, 643, 883
MroI	TCCGGA	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	4 cut(s)	461, 900, 1010, 1115
MspA1I	CMGCKG	2 cut(s)	908, 979
MspCI	CTTAAG	1 cut(s)	1009
MspI	CCGG	3 cut(s)	428, 560, 635
MspR9I	CCNGG	4 cut(s)	123, 615, 710, 1017
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	4 cut(s)	123, 615, 710, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	348, 357, 496, 505
NdeII	GATC	4 cut(s)	324, 658, 861, 1021
NlaIII	CATG	4 cut(s)	499, 717, 1092, 1212
NlaIV	GGNNCC	3 cut(s)	352, 831, 1039
NmuCI	GTSAC	4 cut(s)	396, 781, 931, 967
NspI	RCATGY	2 cut(s)	499, 1212
NspV	TTCGAA	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	226, 1061
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	3 cut(s)	6, 655, 978
PleI	GAGTC	2 cut(s)	914, 964
PpsI	GAGTC	2 cut(s)	914, 964
Ppu21I	YACGTR	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	4 cut(s)	121, 613, 708, 1015
PspGI	CCWGG	4 cut(s)	121, 613, 708, 1015
PspN4I	GGNNCC	3 cut(s)	352, 831, 1039
PspPI	GGNCC	9 cut(s)	125, 332, 359, 425, 611, 734, 829, 1038, 1049
PspPPI	RGGWCCY	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	979
PsuI	RGATCY	3 cut(s)	324, 861, 1021
PvuII	CAGCTG	2 cut(s)	908, 979
RsaI	GTAC	2 cut(s)	61, 521
RsaNI	GTAC	2 cut(s)	60, 520
SaqAI	TTAA	4 cut(s)	461, 900, 1010, 1115
SatI	GCNGC	3 cut(s)	5, 654, 977
Sau3AI	GATC	4 cut(s)	324, 658, 861, 1021
Sau96I	GGNCC	9 cut(s)	125, 332, 359, 425, 611, 734, 829, 1038, 1049
SchI	GAGTC	2 cut(s)	914, 964
ScrFI	CCNGG	4 cut(s)	123, 615, 710, 1017
SfaNI	GCATC	2 cut(s)	805, 1061
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	8 cut(s)	125, 332, 425, 611, 734, 829, 1038, 1049
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
SseBI	AGGCCT	1 cut(s)	1015
SsiI	CCGC	2 cut(s)	567, 609
SspMI	CTAG	8 cut(s)	12, 75, 80, 171, 363, 605, 699, 797
StuI	AGGCCT	1 cut(s)	1015
StyD4I	CCNGG	4 cut(s)	121, 613, 708, 1015
StyI	CCWWGG	4 cut(s)	730, 742, 773, 1027
TaaI	ACNGT	2 cut(s)	514, 967
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	586, 789
TfiI	GAWTC	2 cut(s)	226, 1061
Tru1I	TTAA	4 cut(s)	461, 900, 1010, 1115
Tru9I	TTAA	4 cut(s)	461, 900, 1010, 1115
TscAI	CASTG	3 cut(s)	281, 427, 972
TseFI	GTSAC	4 cut(s)	396, 781, 931, 967
TseI	GCWGC	3 cut(s)	4, 653, 976
Tsp45I	GTSAC	4 cut(s)	396, 781, 931, 967
TspDTI	ATGAA	7 cut(s)	69, 131, 239, 549, 636, 698, 1167
TspRI	CASTG	3 cut(s)	281, 427, 972
Vha464I	CTTAAG	1 cut(s)	1009
VpaK11BI	GGWCC	8 cut(s)	125, 332, 425, 611, 734, 829, 1038, 1049
XapI	RAATTY	3 cut(s)	28, 143, 1133
XbaI	TCTAGA	2 cut(s)	79, 796
XceI	RCATGY	2 cut(s)	499, 1212
XmiI	GTMKAC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	8 cut(s)	12, 75, 80, 171, 363, 605, 699, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.