Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

3809198 .. 3810236

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAACAAAATCCCTGATTGCACTAGTAGTAGTATTTGTAGCCGTAGCCGCAGCCCTAACAAAGAATGTAACTGCCCAAAAGGGCCAAAACTGTGGTTGTGCCTCCGGTCTCTGTTGTAGCCAGTATGGTTACTGCGGCAGCAGCGATGAGTACTGCGGCCAGGGTTGTCAACAGGGCCCCTGCACCGGTGGCACTACTACACCTTCCACCCCAAGTGGCAAAGGTGGCTCTGTGGCTGACATCGTCACACCGGACTTCTTTAACGGAATCATTAGCCAGGCTTCTTCAGACTGCGCCGGGAAGAAATTTTACTCTTGCCATGGTTTTCTTGATGCTGTCAAGTCGTATTCCGGCTTTGGTAGGCTCGGTTCTGCTGATGACTCCAAACAAGAGATAAATCGTGGCACCTACTGCGATACCACAAGTACTGACTATCCGTGCAACCCCAAGAAAAAATACTACGGTCGCGGACCACTCCAACTAACATGGAATTACAACTATGGAGCATCCGGAAACAGCATTGGTTTTGACGGCTTAAACTCTCCAGAAAACGTGGCCTCAGACCCCGCTGTTGCATTTAAGACTGCCTTGTGGTTTTGGATGAACAATGTCCGCCCAGTTCTAAGTCAAGGATTTGGTGCCACCATTCGAGCCATTAACGGCGAGGTTGAATGTGATGGGAAATTACCTGATGCAGTTCAAGCTCGCATCAACTATTACAAAGACTACTGCAACCAACTTAATGTTAATCCTGGCGGCAATCTCTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

259

Amino Acids

27.36

Weight (kDa)

6.53

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	27 - 62	7.6e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	131 - 206	9.6e-26	Chitinase class I
Glyco_hydro_19	PF00182	211 - 258	2.5e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 641
AccII	CGCG	1 cut(s)	471
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	7 cut(s)	51, 138, 159, 471, 570, 616, 759
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	155, 430
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	674, 704
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	162, 279, 754
AluBI	AGCT	1 cut(s)	707
AluI	AGCT	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	4 cut(s)	85, 160, 178, 558
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	53, 141, 144
ApoI	RAATTY	1 cut(s)	308
AsiGI	ACCGGT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	4 cut(s)	85, 178, 179, 473
AsuC2I	CCSGG	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	2 cut(s)	407, 641
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbvI	GCAGC	3 cut(s)	65, 153, 156
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	3 cut(s)	29, 550, 679
BciT130I	CCWGG	3 cut(s)	164, 281, 756
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	116
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 775
BisI	GCNGC	7 cut(s)	51, 54, 139, 142, 145, 160, 760
BlsI	GCNGC	7 cut(s)	52, 55, 140, 143, 146, 161, 761
BmcAI	AGTACT	2 cut(s)	155, 430
Bme1390I	CCNGG	4 cut(s)	164, 281, 301, 756
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	4 cut(s)	85, 178, 179, 473
BmiI	GGNNCC	4 cut(s)	180, 181, 409, 643
BmrFI	CCNGG	4 cut(s)	164, 281, 301, 756
BmrI	ACTGGG	1 cut(s)	614
BmsI	GCATC	4 cut(s)	325, 518, 685, 720
BmuI	ACTGGG	1 cut(s)	614
BpmI	CTGGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	163, 322
BsaWI	WCCGGW	4 cut(s)	107, 188, 253, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	124, 620
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	3 cut(s)	164, 281, 756
BseDI	CCNNGG	2 cut(s)	163, 322
BseGI	GGATG	2 cut(s)	509, 609
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	124, 620
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	65, 153, 156
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	4 cut(s)	87, 162, 180, 560
BshNI	GGYRCC	2 cut(s)	407, 641
BshTI	ACCGGT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	469
BsiSI	CCGG	6 cut(s)	108, 189, 254, 300, 354, 513
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	87, 162, 180, 560
Bso31I	GGTCTC	1 cut(s)	116
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	512
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	7 cut(s)	51, 138, 159, 471, 570, 616, 759
BspANI	GGCC	4 cut(s)	87, 162, 180, 560
BspCNI	CTCAG	1 cut(s)	575
BspEI	TCCGGA	1 cut(s)	512
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	180, 181, 409, 643
BspT107I	GGYRCC	2 cut(s)	407, 641
BspTNI	GGTCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	124, 620
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	163, 322
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	3 cut(s)	164, 281, 756
Bst4CI	ACNGT	2 cut(s)	95, 467
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	562, 626
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	509, 609
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	116
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 144, 192, 228, 414, 704
BstNI	CCWGG	3 cut(s)	164, 281, 756
BstSCI	CCNGG	4 cut(s)	162, 279, 299, 754
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	65, 153, 156
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	87, 162, 180, 560
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	509, 609
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	4 cut(s)	85, 178, 179, 473
Csp6I	GTAC	2 cut(s)	154, 429
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	323, 489
CviQI	GTAC	2 cut(s)	154, 429
DdeI	CTNAG	2 cut(s)	562, 626
EaeI	YGGCCR	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	178, 179
EcoRII	CCWGG	3 cut(s)	162, 279, 754
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	326, 492
FaiI	YATR	4 cut(s)	129, 324, 490, 504
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	2 cut(s)	322, 488
FauI	CCCGC	1 cut(s)	577
Fnu4HI	GCNGC	7 cut(s)	51, 54, 139, 142, 145, 160, 760
FokI	GGATG	2 cut(s)	496, 616
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	7 cut(s)	51, 54, 139, 142, 145, 160, 760
FspBI	CTAG	2 cut(s)	26, 775
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	7 cut(s)	51, 54, 139, 142, 145, 160, 760
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	4 cut(s)	87, 162, 180, 560
HapII	CCGG	6 cut(s)	108, 189, 254, 300, 354, 513
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	326, 492
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	270, 383
HpaII	CCGG	6 cut(s)	108, 189, 254, 300, 354, 513
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	292, 565
Hpy188III	TCNNGA	3 cut(s)	332, 513, 548
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	2 cut(s)	95, 467
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	6 cut(s)	23, 186, 444, 578, 698, 735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 144, 192, 228, 414, 704
HpyF3I	CTNAG	2 cut(s)	562, 626
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	326, 492
HspAI	GCGC	1 cut(s)	297
Kpn2I	TCCGGA	1 cut(s)	512
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	3 cut(s)	65, 153, 156
LweI	GCATC	4 cut(s)	325, 518, 685, 720
MaeI	CTAG	2 cut(s)	26, 775
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	3 cut(s)	70, 131, 247
MboII	GAAGA	2 cut(s)	279, 316
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	308, 493, 686
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	115, 571, 661
MroI	TCCGGA	1 cut(s)	512
MseI	TTAA	6 cut(s)	264, 539, 582, 660, 744, 750
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	6 cut(s)	108, 189, 254, 300, 354, 513
MspR9I	CCNGG	4 cut(s)	164, 281, 301, 756
MvaI	CCWGG	3 cut(s)	164, 281, 756
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	6 cut(s)	50, 144, 192, 228, 414, 704
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	322
NlaIII	CATG	2 cut(s)	326, 492
NlaIV	GGNNCC	4 cut(s)	180, 181, 409, 643
NmuCI	GTSAC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	7 cut(s)	52, 55, 140, 143, 146, 161, 761
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	3 cut(s)	162, 279, 754
PspGI	CCWGG	3 cut(s)	162, 279, 754
PspN4I	GGNNCC	4 cut(s)	180, 181, 409, 643
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	4 cut(s)	85, 178, 179, 473
PsrI	GAACNNNNNNTAC	2 cut(s)	355, 387
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	2 cut(s)	155, 430
RsaNI	GTAC	2 cut(s)	154, 429
SaqAI	TTAA	6 cut(s)	264, 539, 582, 660, 744, 750
SatI	GCNGC	7 cut(s)	51, 54, 139, 142, 145, 160, 760
Sau96I	GGNCC	4 cut(s)	85, 178, 179, 473
ScaI	AGTACT	2 cut(s)	155, 430
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	4 cut(s)	164, 281, 301, 756
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	7 cut(s)	208, 229, 413, 558, 672, 694, 709
SfaNI	GCATC	4 cut(s)	325, 518, 685, 720
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	3 cut(s)	308, 493, 686
SsiI	CCGC	7 cut(s)	51, 138, 159, 471, 570, 616, 759
SspMI	CTAG	2 cut(s)	26, 775
StyD4I	CCNGG	4 cut(s)	162, 279, 299, 754
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	95, 467
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	1 cut(s)	652
TasI	AATT	3 cut(s)	308, 493, 686
TatI	WGTACW	2 cut(s)	153, 428
TauI	GCSGC	4 cut(s)	53, 141, 162, 762
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	6 cut(s)	264, 539, 582, 660, 744, 750
Tru9I	TTAA	6 cut(s)	264, 539, 582, 660, 744, 750
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	53, 141, 144
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	620
TspGWI	ACGGA	2 cut(s)	282, 429
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	2 cut(s)	26, 775
ZrmI	AGTACT	2 cut(s)	155, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.