Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

10137836 .. 10139301

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATCGGAGCAGGGTTATCAGAGGAGGACCATGGCATTTCAAATAGGCACCTGTTGTGCTGCAGGAGTACGATGGGGTTTCGCCAATCCACAAGGTCACTGTTTCTGATGACTTCTCCGAGGTGGTCATGCAGAATGCTATACCCGCTAGCGGTCACCATGACGGTCTTGTTCTTCTGGGTTCGCATTACTAACATCCCAGTGGACTTCGAAGTAAGGAAAATTGCTGCTAATATAGCTTCTGTGGTTGGAATGTATATCGAGTTGGATGAGAAATTGTTTAAGAATAAGGGCAAGCTTGTGGCCAAGTGTAAGGCTTGTCATATGATTTTCCATGAGGGAGGAGCATGCCCCATGGTTGCCAGGGTTGAGCCAAGAGTGGAACAAGTGGCACAGAAACATTTGGAGATAGTTGGTCTGGTATTAGGTTTTGCTAATAGCGAGTTTGAGAATGGAGCTTTCAGGTTTCAAGGCATTCAGAATGCAGTGCTACCTCCGGTGAGTATAGCTCTTTTTGGGCAAAAAGACCATGTATCTGCACGCAAGCCAATTGTGATTAGGGAGCAGTATGTTCACCAGAATGATAGCAATGATGACTCATTTGCTCTAGTTCTGGTGCCTGAGAATGAAGTATTAAAGAGAGAATGTCCTACTTCCCCATTCTCTGTTCTCAGAAAGTTGAAAATTTTGCTGCCAGAGTTATTTGATCGCCCTGCATGCACTGAATGTCCTACAAAGCAAATGAAAGTGCTGGAATTCACTTCTAGATTCACAAACAAGTCATTGTGCATGGTTAAGGCCCCAGACAATATACTTGTACCAAAAGAAAGCCTGTTAAAGACTGGGCCAAAGAAGATGAGTGGTAGACGGACCCTTGGGATCCAAGAACAAGCAACTATCAAAATCCATGAAGGTTGCTGGAGCATAGAAAGCATGCTCTGCGTTTCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

317

Amino Acids

35.69

Weight (kDa)

9.06

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	48, 616
AccI	GTMKAC	1 cut(s)	865
AciI	CCGC	2 cut(s)	146, 152
AclWI	GGATC	2 cut(s)	874, 887
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	684, 755
AfaI	GTAC	2 cut(s)	70, 819
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	42, 470, 682
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	239, 298, 458, 509
AluI	AGCT	4 cut(s)	239, 298, 458, 509
AlwI	GGATC	2 cut(s)	874, 887
AoxI	GGCC	3 cut(s)	303, 798, 845
ApeKI	GCWGC	3 cut(s)	60, 227, 691
ApoI	RAATTY	2 cut(s)	684, 755
AspS9I	GGNCC	4 cut(s)	28, 799, 845, 870
AsuHPI	GGTGA	3 cut(s)	148, 511, 566
AsuII	TTCGAA	1 cut(s)	210
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	28, 870
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	879
BanI	GGYRCC	2 cut(s)	48, 616
BbvI	GCAGC	3 cut(s)	47, 214, 678
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	364
BfaI	CTAG	3 cut(s)	149, 608, 765
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	3 cut(s)	61, 228, 692
BlsI	GCNGC	3 cut(s)	62, 229, 693
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	28, 870
BmgT120I	GGNCC	4 cut(s)	28, 799, 845, 870
BmiI	GGNNCC	5 cut(s)	50, 618, 801, 872, 881
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	2 cut(s)	194, 852
BmtI	GCTAGC	1 cut(s)	152
BmuI	ACTGGG	2 cut(s)	194, 852
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	940
Bpu14I	TTCGAA	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	31, 119, 354, 363, 874
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	200, 847
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	5 cut(s)	31, 119, 354, 363, 874
BseGI	GGATG	2 cut(s)	195, 274
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	612, 685
BseNI	ACTGG	2 cut(s)	200, 847
BseRI	GAGGAG	2 cut(s)	38, 357
BseXI	GCAGC	3 cut(s)	47, 214, 678
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	3 cut(s)	305, 800, 847
BshNI	GGYRCC	2 cut(s)	48, 616
BsiSI	CCGG	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	3 cut(s)	141, 474, 487
BsnI	GGCC	3 cut(s)	305, 800, 847
Bsp119I	TTCGAA	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	3, 706, 879
Bsp19I	CCATGG	2 cut(s)	31, 354
BspACI	CCGC	2 cut(s)	146, 152
BspANI	GGCC	3 cut(s)	305, 800, 847
BspCNI	CTCAG	2 cut(s)	613, 684
BspLI	GGNNCC	5 cut(s)	50, 618, 801, 872, 881
BspMAI	CTGCAG	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	874, 887
BspT104I	TTCGAA	1 cut(s)	210
BspT107I	GGYRCC	2 cut(s)	48, 616
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	200, 847
BssECI	CCNNGG	5 cut(s)	31, 119, 354, 363, 874
BssMI	GATC	3 cut(s)	3, 706, 879
BssT1I	CCWWGG	3 cut(s)	31, 354, 874
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	102, 166
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	7 cut(s)	150, 296, 349, 541, 545, 718, 935
BstDEI	CTNAG	2 cut(s)	621, 671
BstDSI	CCRYGG	2 cut(s)	31, 354
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	195, 274
BstKTI	GATC	3 cut(s)	6, 709, 882
BstMBI	GATC	3 cut(s)	3, 706, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 236, 717, 930, 939
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	3 cut(s)	351, 720, 937
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	47, 214, 678
BstX2I	RGATCY	1 cut(s)	879
BstYI	RGATCY	1 cut(s)	879
BsuRI	GGCC	3 cut(s)	305, 800, 847
BtgI	CCRYGG	2 cut(s)	31, 354
BtsCI	GGATG	2 cut(s)	195, 274
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	4 cut(s)	98, 207, 492, 720
Cac8I	GCNNGC	7 cut(s)	150, 296, 349, 541, 545, 718, 935
Cfr13I	GGNCC	4 cut(s)	28, 799, 845, 870
Csp6I	GTAC	2 cut(s)	69, 818
CviQI	GTAC	2 cut(s)	69, 818
DdeI	CTNAG	2 cut(s)	621, 671
DpnI	GATC	3 cut(s)	5, 708, 881
DpnII	GATC	3 cut(s)	3, 706, 879
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	3 cut(s)	31, 354, 874
Eco47I	GGWCC	2 cut(s)	28, 870
Eco91I	GGTNACC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	799
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	3 cut(s)	31, 354, 874
ErhI	CCWWGG	3 cut(s)	31, 354, 874
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	3 cut(s)	61, 228, 692
FokI	GGATG	2 cut(s)	182, 281
Fsp4HI	GCNGC	3 cut(s)	61, 228, 692
FspBI	CTAG	3 cut(s)	149, 608, 765
GluI	GCNGC	3 cut(s)	61, 228, 692
GsuI	CTGGAG	1 cut(s)	940
HaeIII	GGCC	3 cut(s)	305, 800, 847
HapII	CCGG	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	596, 768
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	148, 511, 566
Hpy166II	GTNNAC	3 cut(s)	205, 574, 866
Hpy188I	TCNGA	6 cut(s)	8, 22, 108, 120, 480, 674
Hpy188III	TCNNGA	1 cut(s)	765
Hpy8I	GTNNAC	3 cut(s)	205, 574, 866
HpyAV	CCTTC	1 cut(s)	905
HpyCH4III	ACNGT	2 cut(s)	102, 166
HpyCH4V	TGCA	7 cut(s)	63, 132, 485, 539, 716, 720, 789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 236, 717, 930, 939
HpyF3I	CTNAG	2 cut(s)	621, 671
Kzo9I	GATC	3 cut(s)	3, 706, 879
LmnI	GCTCC	5 cut(s)	8, 344, 455, 562, 921
Lsp1109I	GCAGC	3 cut(s)	47, 214, 678
MaeI	CTAG	3 cut(s)	149, 608, 765
MaeIII	GTNAC	2 cut(s)	96, 154
MalI	GATC	3 cut(s)	5, 708, 881
MboI	GATC	3 cut(s)	3, 706, 879
MboII	GAAGA	2 cut(s)	166, 865
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	879
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	5 cut(s)	222, 275, 549, 684, 755
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	229, 246
MnlI	CCTC	6 cut(s)	16, 19, 114, 331, 335, 504
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	4 cut(s)	282, 635, 795, 836
MslI	CAYNNNNRTG	2 cut(s)	200, 579
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	3 cut(s)	141, 474, 487
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	5 cut(s)	145, 236, 717, 930, 939
NcoI	CCATGG	2 cut(s)	31, 354
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	3 cut(s)	3, 706, 879
NheI	GCTAGC	1 cut(s)	148
NlaIV	GGNNCC	5 cut(s)	50, 618, 801, 872, 881
NmuCI	GTSAC	2 cut(s)	96, 154
NspI	RCATGY	3 cut(s)	351, 720, 937
NspV	TTCGAA	1 cut(s)	210
PaeI	GCATGC	3 cut(s)	351, 720, 937
PctI	GAATGC	3 cut(s)	141, 474, 487
PfeI	GAWTC	1 cut(s)	768
PkrI	GCNGC	3 cut(s)	62, 229, 693
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	5 cut(s)	50, 618, 801, 872, 881
PspPI	GGNCC	4 cut(s)	28, 799, 845, 870
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	879
RsaI	GTAC	2 cut(s)	70, 819
RsaNI	GTAC	2 cut(s)	69, 818
RseI	CAYNNNNRTG	2 cut(s)	200, 579
SaqAI	TTAA	4 cut(s)	282, 635, 795, 836
SatI	GCNGC	3 cut(s)	61, 228, 692
Sau3AI	GATC	3 cut(s)	3, 706, 879
Sau96I	GGNCC	4 cut(s)	28, 799, 845, 870
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	2 cut(s)	28, 870
SmiMI	CAYNNNNRTG	2 cut(s)	200, 579
SphI	GCATGC	3 cut(s)	351, 720, 937
Sse9I	AATT	5 cut(s)	222, 275, 549, 684, 755
SsiI	CCGC	2 cut(s)	146, 152
SspMI	CTAG	3 cut(s)	149, 608, 765
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	3 cut(s)	31, 354, 874
TaaI	ACNGT	2 cut(s)	102, 166
TaqI	TCGA	2 cut(s)	210, 261
TasI	AATT	5 cut(s)	222, 275, 549, 684, 755
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	4 cut(s)	282, 635, 795, 836
Tru9I	TTAA	4 cut(s)	282, 635, 795, 836
TscAI	CASTG	4 cut(s)	105, 207, 492, 727
TseFI	GTSAC	2 cut(s)	96, 154
TseI	GCWGC	3 cut(s)	60, 227, 691
Tsp45I	GTSAC	2 cut(s)	96, 154
TspDTI	ATGAA	3 cut(s)	642, 758, 924
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	4 cut(s)	105, 207, 492, 727
VpaK11BI	GGWCC	2 cut(s)	28, 870
XapI	RAATTY	2 cut(s)	684, 755
XbaI	TCTAGA	1 cut(s)	764
XceI	RCATGY	3 cut(s)	351, 720, 937
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	3 cut(s)	149, 608, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.