Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

84933381 .. 84935051

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACAATTAGGACAAAATCCCTCCTTTTCACCATCCTAGGCCTAGCATTTGTAGCCCAAATTGCAATAGCTCAAAACTGCGGGTGTGCCGCAAACCTGTGTTGCAGCGAATTTGGTTATTGCGGCACCAGCAAGGCCTACTGCGGCAAGGGTTGTCAAGCAGGACCTTGTACTACCACCACTCCCACACCGACTACTAACGGTGACTCGGTGGCGAACATTGTGACCACTGAATTCTTTAATGGGATTATTAACCAGGCTGCCGCTAAATGTGCCGGGAAGAGCTTCTACACCAGACAGGCTTTTCTCAATGCCCTCGGCTCTTACCCCAATTTTGGTACCAGCGATTCCGCTGAAAAGAATAAGCGGGAGATTGCAGCTTTCTTTGCTCAGGTCACTCATGAGACTGGCCATTTTTGCTACATAGAAGAGATAAATCGCGGAACCTACTGCAAGAGAAGTACAGTCTACCCATGCAACCCTCAAAAGAAGTACTATGGGCGAGGACCACTCCAACTGACCTGGAACTACAATTACGGAGCGGCCGGAAAAGCTATTGGCTTTGACGGCTTAAACTCCCTGAAAAGGTGGCTTCAGACCCTGTGGTGGCGTTCAAGGCGAGCTTATGGTTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

212

Amino Acids

23.24

Weight (kDa)

9.23

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	26 - 57	1.9e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	74 - 192	8e-30	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	125, 338
AccBSI	CCGCTC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	441
AciI	CCGC	9 cut(s)	81, 90, 123, 144, 264, 351, 367, 441, 542
AcoI	YGGCCR	2 cut(s)	409, 543
AcsI	RAATTY	2 cut(s)	110, 233
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	4 cut(s)	172, 340, 463, 494
AfiI	CCNNNNNNNGG	3 cut(s)	335, 585, 606
AgsI	TTSAA	1 cut(s)	615
AjnI	CCWGG	2 cut(s)	255, 521
AluBI	AGCT	5 cut(s)	71, 285, 380, 554, 623
AluI	AGCT	5 cut(s)	71, 285, 380, 554, 623
Alw26I	GTCTC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	601
AoxI	GGCC	4 cut(s)	40, 135, 409, 543
ApeKI	GCWGC	3 cut(s)	105, 260, 377
ApoI	RAATTY	2 cut(s)	110, 233
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	164, 506
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	22, 215
AvaII	GGWCC	2 cut(s)	164, 506
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	125, 338
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	3 cut(s)	117, 247, 389
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	257, 523
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	38, 44
BisI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	8 cut(s)	91, 107, 125, 146, 262, 265, 379, 544
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	257, 277, 523
Bme18I	GGWCC	2 cut(s)	164, 506
BmgT120I	GGNCC	2 cut(s)	164, 506
BmiI	GGNNCC	3 cut(s)	127, 340, 445
BmrFI	CCNGG	3 cut(s)	257, 277, 523
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	37, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 585, 606
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	257, 523
BseDI	CCNNGG	2 cut(s)	37, 316
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	335, 585, 606
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	412
BseX3I	CGGCCG	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	117, 247, 389
Bsh1236I	CGCG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	4 cut(s)	42, 137, 411, 545
BshNI	GGYRCC	2 cut(s)	125, 338
BsiEI	CGRYCG	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	276, 546
BslI	CCNNNNNNNGG	3 cut(s)	335, 585, 606
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	4 cut(s)	42, 137, 411, 545
BspACI	CCGC	9 cut(s)	81, 90, 123, 144, 264, 351, 367, 441, 542
BspANI	GGCC	4 cut(s)	42, 137, 411, 545
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	127, 340, 445
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	2 cut(s)	125, 338
BsrBI	CCGCTC	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	37, 316
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	257, 523
Bst4CI	ACNGT	2 cut(s)	203, 466
Bst6I	CTCTTC	2 cut(s)	275, 423
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	398
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 62, 129, 272, 386, 417, 551, 567, 616
BstNI	CCWGG	2 cut(s)	257, 523
BstSCI	CCNGG	3 cut(s)	255, 275, 521
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	117, 247, 389
BstZI	CGGCCG	1 cut(s)	543
BsuRI	GGCC	4 cut(s)	42, 137, 411, 545
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	601
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	164, 506
Csp6I	GTAC	4 cut(s)	171, 339, 462, 493
CviAII	CATG	2 cut(s)	401, 474
CviQI	GTAC	4 cut(s)	171, 339, 462, 493
DdeI	CTNAG	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	409, 543
EagI	CGGCCG	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	275, 423
EarI	CTCTTC	2 cut(s)	275, 423
EclXI	CGGCCG	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	37
Eco147I	AGGCCT	2 cut(s)	42, 137
Eco47I	GGWCC	2 cut(s)	164, 506
Eco52I	CGGCCG	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	255, 521
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	404, 477
FaiI	YATR	5 cut(s)	402, 425, 475, 498, 627
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FatI	CATG	2 cut(s)	400, 473
FauI	CCCGC	2 cut(s)	74, 360
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
FspBI	CTAG	2 cut(s)	38, 44
GluI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
HaeIII	GGCC	4 cut(s)	42, 137, 411, 545
HapII	CCGG	2 cut(s)	276, 546
Hin1II	CATG	2 cut(s)	404, 477
HinfI	GANTC	2 cut(s)	206, 347
HpaII	CCGG	2 cut(s)	276, 546
HphI	GGTGA	2 cut(s)	22, 215
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	203, 466
HpyCH4V	TGCA	5 cut(s)	65, 105, 377, 453, 477
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 62, 129, 272, 386, 417, 551, 567, 616
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	404, 477
KpnI	GGTACC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	3 cut(s)	117, 247, 389
MaeI	CTAG	2 cut(s)	38, 44
MaeIII	GTNAC	3 cut(s)	203, 223, 394
MbiI	CCGCTC	1 cut(s)	542
MboII	GAAGA	2 cut(s)	292, 440
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
MluNI	TGGCCA	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	4 cut(s)	32, 326, 492, 497
Mox20I	TGGCCA	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	3 cut(s)	240, 252, 572
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	276, 546
MspR9I	CCNGG	3 cut(s)	257, 277, 523
MvaI	CCWGG	2 cut(s)	257, 523
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	9 cut(s)	53, 62, 129, 272, 386, 417, 551, 567, 616
NciI	CCSGG	1 cut(s)	277
NlaIII	CATG	2 cut(s)	404, 477
NlaIV	GGNNCC	3 cut(s)	127, 340, 445
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	3 cut(s)	203, 223, 394
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	2 cut(s)	42, 137
PciSI	GCTCTTC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	8 cut(s)	91, 107, 125, 146, 262, 265, 379, 544
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	255, 521
PspGI	CCWGG	2 cut(s)	255, 521
PspN4I	GGNNCC	3 cut(s)	127, 340, 445
PspPI	GGNCC	2 cut(s)	164, 506
PspPPI	RGGWCCY	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PstNI	CAGNNNCTG	1 cut(s)	601
RsaI	GTAC	4 cut(s)	172, 340, 463, 494
RsaNI	GTAC	4 cut(s)	171, 339, 462, 493
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	240, 252, 572
SatI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
Sau96I	GGNCC	2 cut(s)	164, 506
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	257, 277, 523
SinI	GGWCC	2 cut(s)	164, 506
Sse9I	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
SseBI	AGGCCT	2 cut(s)	42, 137
SsiI	CCGC	9 cut(s)	81, 90, 123, 144, 264, 351, 367, 441, 542
SspMI	CTAG	2 cut(s)	38, 44
StuI	AGGCCT	2 cut(s)	42, 137
StyD4I	CCNGG	3 cut(s)	255, 275, 521
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	203, 466
TasI	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
TatI	WGTACW	3 cut(s)	170, 461, 492
TauI	GCSGC	5 cut(s)	92, 126, 147, 266, 545
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	240, 252, 572
Tru9I	TTAA	3 cut(s)	240, 252, 572
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	3 cut(s)	203, 223, 394
TseI	GCWGC	3 cut(s)	105, 260, 377
Tsp45I	GTSAC	3 cut(s)	203, 223, 394
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	164, 506
XapI	RAATTY	2 cut(s)	110, 233
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	38, 44
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.