Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008653.1

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

25371 .. 26415

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008653.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggctttccaagttacaattaggacgaagtcccttttcttcaccatcctaggtttagcatttgtagcacaaattgcaatagctcaagactgcgggtgtgccgcaggcctgtgttgcagcgaatttggttactgcggcaccggtgatgcctactgcggcaagggttgtaaagaaggtccttgtactaccacccccacaccgacaccaactactaacggtggctcggtggcagatatcgtgaccactgacttcttcaacgggattattaatcaggctggtgctgactgtgccggaaagagcttctacaccagacaggcttttctcgatgccctcggctcttatggtgatttcggtaccaccggttccgctgatgacaataagcgggaagttgcagcgctgtttgctcatgtcacgcatgagacgggccatttttgctacattgaagagataaataagagcacctactgcgacgcggaaagaacagactacccgtgcaaccccagcaagcagtactacgggcgtggaccactccagctcacctggaactacaattacggagctgccggaaatgccattggctttgacggcctgaacctccccgaaacggtggctacagaccccgtggtggcgttcaaaacgggcttgtggttttggatgaccaatgtgcactccgttataggccaaggattcggggccacaactcgagccatcaacggtgacgtggaatgtgatggcaaagctccggacaaagttcaagctcgcgtcaactattataatgactactgcacccaactcaatgtttctccgggtgacaatctctattgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

275

Amino Acids

29.47

Weight (kDa)

4.73

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	137, 353
AccII	CGCG	2 cut(s)	473, 762
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	7 cut(s)	93, 102, 135, 156, 366, 382, 473
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	3 cut(s)	184, 355, 512
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	604, 625
AgeI	ACCGGT	2 cut(s)	140, 359
AgsI	TTSAA	4 cut(s)	256, 443, 634, 755
AjiI	CACGTC	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	6 cut(s)	83, 300, 535, 560, 740, 758
AluI	AGCT	6 cut(s)	83, 300, 535, 560, 740, 758
Alw21I	GWGCWC	2 cut(s)	461, 669
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	702
Aor13HI	TCCGGA	1 cut(s)	742
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	5 cut(s)	106, 424, 586, 679, 693
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	3 cut(s)	117, 392, 560
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	267
AsiGI	ACCGGT	2 cut(s)	140, 359
Asp718I	GGTACC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	176, 424, 524, 693
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	6 cut(s)	34, 155, 356, 529, 728, 821
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	2 cut(s)	176, 524
AvrII	CCTAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	2 cut(s)	137, 353
Bbv12I	GWGCWC	2 cut(s)	461, 669
BbvI	GCAGC	3 cut(s)	129, 404, 547
BccI	CCATC	3 cut(s)	53, 716, 725
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	541, 807
Bme18I	GGWCC	2 cut(s)	176, 524
BmeT110I	CYCGRG	1 cut(s)	702
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	4 cut(s)	176, 424, 524, 693
BmiI	GGNNCC	4 cut(s)	139, 355, 364, 694
BmrFI	CCNGG	2 cut(s)	541, 807
BmsI	GCATC	2 cut(s)	136, 316
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	807
BsaJI	CCNNGG	4 cut(s)	49, 331, 621, 682
BsaWI	WCCGGW	3 cut(s)	140, 359, 742
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 625
Bse118I	RCCGGY	2 cut(s)	140, 359
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	4 cut(s)	49, 331, 621, 682
BseGI	GGATG	2 cut(s)	45, 660
BseLI	CCNNNNNNNGG	2 cut(s)	604, 625
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	3 cut(s)	129, 404, 547
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	769
Bsh1236I	CGCG	2 cut(s)	473, 762
BshFI	GGCC	5 cut(s)	108, 426, 588, 681, 695
BshNI	GGYRCC	2 cut(s)	137, 353
BshTI	ACCGGT	2 cut(s)	140, 359
BsiHKAI	GWGCWC	2 cut(s)	461, 669
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	6 cut(s)	141, 291, 360, 564, 743, 806
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	604, 625
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	5 cut(s)	108, 426, 588, 681, 695
BsoBI	CYCGRG	1 cut(s)	702
Bsp1286I	GDGCHC	2 cut(s)	461, 669
Bsp13I	TCCGGA	1 cut(s)	742
BspACI	CCGC	7 cut(s)	93, 102, 135, 156, 366, 382, 473
BspANI	GGCC	5 cut(s)	108, 426, 588, 681, 695
BspEI	TCCGGA	1 cut(s)	742
BspFNI	CGCG	2 cut(s)	473, 762
BspLI	GGNNCC	4 cut(s)	139, 355, 364, 694
BspT107I	GGYRCC	2 cut(s)	137, 353
BsrFI	RCCGGY	2 cut(s)	140, 359
BssAI	RCCGGY	2 cut(s)	140, 359
BssECI	CCNNGG	4 cut(s)	49, 331, 621, 682
BssT1I	CCWWGG	2 cut(s)	49, 682
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	4 cut(s)	218, 287, 607, 716
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	2 cut(s)	74, 465
BstC8I	GCNNGC	3 cut(s)	106, 506, 760
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	45, 660
BstFNI	CGCG	2 cut(s)	473, 762
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	539, 805
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	669
BstUI	CGCG	2 cut(s)	473, 762
BstV1I	GCAGC	3 cut(s)	129, 404, 547
BsuRI	GGCC	5 cut(s)	108, 426, 588, 681, 695
BtgI	CCRYGG	1 cut(s)	621
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	2 cut(s)	45, 660
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	106, 506, 760
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	2 cut(s)	140, 359
Cfr13I	GGNCC	4 cut(s)	176, 424, 524, 693
CseI	GACGC	2 cut(s)	479, 751
Csp6I	GTAC	3 cut(s)	183, 354, 511
CspAI	ACCGGT	2 cut(s)	140, 359
CviAII	CATG	2 cut(s)	407, 416
CviQI	GTAC	3 cut(s)	183, 354, 511
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	49, 682
Eco147I	AGGCCT	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	176, 524
Eco47III	AGCGCT	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	49, 682
ErhI	CCWWGG	2 cut(s)	49, 682
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	2 cut(s)	410, 419
FaiI	YATR	5 cut(s)	342, 408, 417, 677, 774
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	406, 415
FauI	CCCGC	2 cut(s)	86, 375
Fnu4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FokI	GGATG	2 cut(s)	32, 667
Fsp4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	5 cut(s)	108, 426, 588, 681, 695
HapII	CCGG	6 cut(s)	141, 291, 360, 564, 743, 806
HgaI	GACGC	2 cut(s)	479, 751
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	410, 419
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	1 cut(s)	687
HpaII	CCGG	6 cut(s)	141, 291, 360, 564, 743, 806
HphI	GGTGA	6 cut(s)	34, 155, 356, 529, 728, 821
Hpy166II	GTNNAC	3 cut(s)	524, 667, 766
Hpy188III	TCNNGA	4 cut(s)	86, 238, 323, 743
Hpy8I	GTNNAC	3 cut(s)	524, 667, 766
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	218, 287, 607, 716
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	6 cut(s)	77, 117, 392, 495, 667, 786
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	2 cut(s)	410, 419
HspAI	GCGC	1 cut(s)	395
Kpn2I	TCCGGA	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	557, 745
Lsp1109I	GCAGC	3 cut(s)	129, 404, 547
LweI	GCATC	2 cut(s)	136, 316
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	6 cut(s)	13, 128, 238, 409, 716, 809
MboII	GAAGA	3 cut(s)	31, 244, 455
MhlI	GDGCHC	2 cut(s)	461, 669
MluCI	AATT	4 cut(s)	18, 72, 122, 550
MnlI	CCTC	2 cut(s)	341, 605
MroI	TCCGGA	1 cut(s)	742
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	6 cut(s)	141, 291, 360, 564, 743, 806
MspR9I	CCNGG	2 cut(s)	541, 807
MvaI	CCWGG	1 cut(s)	541
MvnI	CGCG	2 cut(s)	473, 762
NciI	CCSGG	1 cut(s)	807
NlaIII	CATG	2 cut(s)	410, 419
NlaIV	GGNNCC	4 cut(s)	139, 355, 364, 694
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	4 cut(s)	238, 409, 716, 809
PaeR7I	CTCGAG	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	687
PflFI	GACNNNGTC	1 cut(s)	28
PinAI	ACCGGT	2 cut(s)	140, 359
PkrI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
PpuMI	RGGWCCY	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	139, 355, 364, 694
PspPI	GGNCC	4 cut(s)	176, 424, 524, 693
PspPPI	RGGWCCY	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	702
PsrI	GAACNNNNNNTAC	4 cut(s)	346, 378, 536, 568
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	3 cut(s)	184, 355, 512
RsaNI	GTAC	3 cut(s)	183, 354, 511
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
Sau96I	GGNCC	4 cut(s)	176, 424, 524, 693
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	541, 807
SduI	GDGCHC	2 cut(s)	461, 669
SfaNI	GCATC	2 cut(s)	136, 316
SfcI	CTRYAG	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	702
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	176, 524
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	84, 702
SmoI	CTYRAG	2 cut(s)	84, 702
Sse9I	AATT	4 cut(s)	18, 72, 122, 550
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	7 cut(s)	93, 102, 135, 156, 366, 382, 473
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	539, 805
StyI	CCWWGG	2 cut(s)	49, 682
TaaI	ACNGT	4 cut(s)	218, 287, 607, 716
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	324, 703
TasI	AATT	4 cut(s)	18, 72, 122, 550
TatI	WGTACW	2 cut(s)	182, 510
TauI	GCSGC	3 cut(s)	104, 138, 159
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	4 cut(s)	238, 409, 716, 809
TseI	GCWGC	3 cut(s)	117, 392, 560
Tsp45I	GTSAC	4 cut(s)	238, 409, 716, 809
TspGWI	ACGGA	2 cut(s)	570, 661
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	176, 524
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	702
XmaJI	CCTAGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.