Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

18081304 .. 18082776

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTTTTCTGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGTTGGATGCCGATCAGGTCCTTGTAGAGGTAGTGGAACCCCGACCGGAGGGTCGGTCGGTAGCATTGTGACACAAGGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAAGAGATTAACGGAGCAACACGTAACTACTGCCAGAGCAGCAACACACAATACCCATGTGCACCGGGAAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAACTACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACCCTGGTCCTAACCTTAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

264

Amino Acids

28.35

Weight (kDa)

8.43

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	26 - 57	6.4e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	71 - 211	7.3e-38	Chitinase class I
Glyco_hydro_19	PF00182	218 - 264	1.1e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	266
AciI	CCGC	4 cut(s)	81, 144, 266, 306
AclWI	GGATC	1 cut(s)	493
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	3 cut(s)	173, 194, 476
AflIII	ACRYGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	4 cut(s)	251, 599, 677, 760
AluI	AGCT	4 cut(s)	251, 599, 677, 760
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	4 cut(s)	75, 377, 548, 738
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	1 cut(s)	638
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	1 cut(s)	444
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AseI	ATTAAT	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	89, 266
AspS9I	GGNCC	4 cut(s)	164, 494, 769, 776
AsuC2I	CCSGG	1 cut(s)	471
AvaII	GGWCC	4 cut(s)	164, 494, 769, 776
BaeGI	GKGCMC	1 cut(s)	469
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BanI	GGYRCC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	4 cut(s)	75, 377, 548, 738
BfmI	CTRYAG	2 cut(s)	594, 739
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	2 cut(s)	306, 445
BlsI	GCNGC	2 cut(s)	307, 446
Bme1390I	CCNGG	2 cut(s)	471, 774
Bme18I	GGWCC	4 cut(s)	164, 494, 769, 776
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	164, 494, 769, 776
BmiI	GGNNCC	4 cut(s)	127, 184, 664, 771
BmrFI	CCNGG	2 cut(s)	471, 774
BmsI	GCATC	2 cut(s)	124, 143
BoxI	GACNNNNGTC	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	652, 772
BsaWI	WCCGGW	3 cut(s)	191, 386, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 194, 476
Bse118I	RCCGGY	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	652, 772
BseGI	GGATG	2 cut(s)	158, 630
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	3 cut(s)	173, 194, 476
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	3 cut(s)	192, 204, 490
BshFI	GGCC	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	3 cut(s)	192, 204, 490
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	5 cut(s)	192, 387, 470, 641, 711
BslI	CCNNNNNNNGG	3 cut(s)	173, 194, 476
BsmAI	GTCTC	4 cut(s)	75, 377, 548, 738
BsnI	GGCC	1 cut(s)	640
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	158, 498
BspACI	CCGC	4 cut(s)	81, 144, 266, 306
BspANI	GGCC	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	4 cut(s)	127, 184, 664, 771
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	652, 772
BssMI	GATC	2 cut(s)	158, 498
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	64, 122, 595, 701
Bst6I	CTCTTC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	22, 43, 785
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	158, 630
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	2 cut(s)	89, 266
BstKTI	GATC	2 cut(s)	161, 501
BstMAI	GTCTC	4 cut(s)	75, 377, 548, 738
BstMBI	GATC	2 cut(s)	158, 498
BstMCI	CGRYCG	3 cut(s)	192, 204, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 722
BstNI	CCWGG	1 cut(s)	774
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	2 cut(s)	469, 772
BstSFI	CTRYAG	2 cut(s)	594, 739
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	158, 630
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	2 cut(s)	89, 266
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	4 cut(s)	164, 494, 769, 776
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	361, 462, 510
CviJI	RGCY	9 cut(s)	5, 251, 480, 568, 599, 640, 665, 677, 760
CviKI_1	RGCY	9 cut(s)	5, 251, 480, 568, 599, 640, 665, 677, 760
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	3 cut(s)	22, 43, 785
DpnI	GATC	2 cut(s)	160, 500
DpnII	GATC	2 cut(s)	158, 498
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	652
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	4 cut(s)	164, 494, 769, 776
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	364, 465, 513
FaiI	YATR	6 cut(s)	139, 362, 404, 463, 511, 741
FatI	CATG	3 cut(s)	360, 461, 509
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	306, 445
FokI	GGATG	2 cut(s)	165, 637
Fsp4HI	GCNGC	2 cut(s)	306, 445
GlaI	GCGC	2 cut(s)	88, 265
GluI	GCNGC	2 cut(s)	306, 445
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	5 cut(s)	192, 387, 470, 641, 711
HhaI	GCGC	2 cut(s)	89, 266
Hin1II	CATG	3 cut(s)	364, 465, 513
Hin6I	GCGC	2 cut(s)	87, 264
HinP1I	GCGC	2 cut(s)	87, 264
HincII	GTYRAC	2 cut(s)	301, 721
HindII	GTYRAC	2 cut(s)	301, 721
HinfI	GANTC	2 cut(s)	276, 290
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	5 cut(s)	192, 387, 470, 641, 711
Hpy166II	GTNNAC	5 cut(s)	301, 467, 721, 755, 769
Hpy188I	TCNGA	3 cut(s)	58, 498, 648
Hpy188III	TCNNGA	3 cut(s)	380, 551, 604
Hpy8I	GTNNAC	5 cut(s)	301, 467, 721, 755, 769
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	38, 566
HpyCH4III	ACNGT	4 cut(s)	64, 122, 595, 701
HpyCH4IV	ACGT	2 cut(s)	346, 427
HpyCH4V	TGCA	4 cut(s)	105, 137, 467, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 722
HpyF3I	CTNAG	3 cut(s)	22, 43, 785
HpySE526I	ACGT	2 cut(s)	346, 427
Hsp92II	CATG	3 cut(s)	364, 465, 513
HspAI	GCGC	2 cut(s)	87, 264
KpnI	GGTACC	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	158, 498
LmnI	GCTCC	4 cut(s)	94, 419, 527, 662
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	2 cut(s)	124, 143
MaeII	ACGT	2 cut(s)	346, 427
MaeIII	GTNAC	6 cut(s)	116, 214, 287, 337, 428, 695
MalI	GATC	2 cut(s)	160, 500
MboI	GATC	2 cut(s)	158, 498
MboII	GAAGA	2 cut(s)	23, 419
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	3 cut(s)	331, 351, 706
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	130, 526
MnlI	CCTC	4 cut(s)	50, 107, 167, 188
Mph1103I	ATGCAT	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	4 cut(s)	231, 300, 414, 681
MspI	CCGG	5 cut(s)	192, 387, 470, 641, 711
MspR9I	CCNGG	2 cut(s)	471, 774
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	444, 722
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	158, 498
NlaIII	CATG	3 cut(s)	364, 465, 513
NlaIV	GGNNCC	4 cut(s)	127, 184, 664, 771
NmuCI	GTSAC	2 cut(s)	214, 287
NsiI	ATGCAT	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	307, 446
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	164
PshAI	GACNNNNGTC	1 cut(s)	774
PshBI	ATTAAT	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	4 cut(s)	127, 184, 664, 771
PspPI	GGNCC	4 cut(s)	164, 494, 769, 776
PspPPI	RGGWCCY	1 cut(s)	164
PsrI	GAACNNNNNNTAC	4 cut(s)	506, 538, 627, 659
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	231, 300, 414, 681
SatI	GCNGC	2 cut(s)	306, 445
Sau3AI	GATC	2 cut(s)	158, 498
Sau96I	GGNCC	4 cut(s)	164, 494, 769, 776
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	471, 774
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	124, 143
SfcI	CTRYAG	2 cut(s)	594, 739
SinI	GGWCC	4 cut(s)	164, 494, 769, 776
Sse9I	AATT	3 cut(s)	331, 351, 706
SsiI	CCGC	4 cut(s)	81, 144, 266, 306
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	469, 772
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	4 cut(s)	64, 122, 595, 701
TaiI	ACGT	2 cut(s)	349, 430
TaqII	GACCGA	3 cut(s)	190, 476, 536
TasI	AATT	3 cut(s)	331, 351, 706
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	4 cut(s)	231, 300, 414, 681
Tru9I	TTAA	4 cut(s)	231, 300, 414, 681
TseFI	GTSAC	2 cut(s)	214, 287
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	2 cut(s)	214, 287
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	2 cut(s)	432, 540
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	4 cut(s)	164, 494, 769, 776
VspI	ATTAAT	1 cut(s)	681
XagI	CCTNNNNNAGG	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.