Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

3743656 .. 3744512

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTATCTATCCTAGAAACAATTACCTCCTAAACCTCATTGCAGTGGCGTTTGTTGCAGCAGGAGCCCTGTTGCCCACAAGTGTAACAGCTCAAGTTGCGGTGGGTGATATTGTCACTCAGGCATTCTTCGATGGGATCATCAACCAGGCTGCTGCAGATTGTGCTGGCAAGAACTTCTACACACGGCAATCTTTTCTTGATGCTGTGAACTCGTATTCCGACTTCGGCAGGACCGGTTCGGCGGATGACTCCAAACGTGAAATTGCAGCTTTCTTTGCTCATGTCACCCATGAGACTGGCCACTTCTGCTACATAGAAGAGATAAATCGTGACACATACTGCGATACAAGTCGGACAGACTATCCATGCAACCCTAGCAAACAGTACTACGGACGTGGACCTCTCCAACTAACATGGAACTACAACTATGGAGCTGCTGGAAACAGTATTGGTTTTGACGGCTTAAACTCACCTGAATCCGTGGCCTCCGATCCCGTCCTTGCATTCAAGACTGCATTGTGGTATTGGATAACCAATGTCCGTCCTGTTATAAGTCAAGGATTTGGAGCCACAATTCGAGCCATTAATGGTGCTGTGGAATGTGATGGTAAAAGGCCTGACCTAGTTCAAGCCCGTGTCAACTATTACACTGATTATTGCTCCCAGTTTGGTGTTGATCCTGGCACTAATCTCTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

235

Amino Acids

25.58

Weight (kDa)

4.95

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	38 - 183	9e-40	Chitinase class I
Glyco_hydro_19	PF00182	187 - 234	4.6e-07	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AciI	CCGC	2 cut(s)	101, 245
AclWI	GGATC	3 cut(s)	146, 488, 674
AcoI	YGGCCR	1 cut(s)	301
AfaI	GTAC	1 cut(s)	389
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	511, 632
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	147, 682
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	92, 272, 437
AluI	AGCT	3 cut(s)	92, 272, 437
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	3 cut(s)	146, 488, 674
AoxI	GGCC	3 cut(s)	301, 486, 617
ApeKI	GCWGC	5 cut(s)	59, 152, 155, 269, 437
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	234, 401
AsuHPI	GGTGA	3 cut(s)	119, 280, 465
AvaII	GGWCC	2 cut(s)	234, 401
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbvI	GCAGC	5 cut(s)	71, 139, 142, 281, 424
BccI	CCATC	2 cut(s)	128, 602
BceAI	ACGGC	2 cut(s)	203, 478
BciT130I	CCWGG	2 cut(s)	149, 684
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	15, 378, 626
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	5 cut(s)	60, 153, 156, 270, 438
BlsI	GCNGC	5 cut(s)	61, 154, 157, 271, 439
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	2 cut(s)	149, 684
Bme18I	GGWCC	2 cut(s)	234, 401
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	234, 401
BmiI	GGNNCC	2 cut(s)	67, 571
BmrFI	CCNGG	2 cut(s)	149, 684
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	304, 667
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	149, 684
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	304, 667
BseXI	GCAGC	5 cut(s)	71, 139, 142, 281, 424
BshFI	GGCC	3 cut(s)	303, 488, 619
BshTI	ACCGGT	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	125, 506
BsnI	GGCC	3 cut(s)	303, 488, 619
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	138, 493, 679
BspACI	CCGC	2 cut(s)	101, 245
BspANI	GGCC	3 cut(s)	303, 488, 619
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	67, 571
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	3 cut(s)	146, 488, 674
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	304, 667
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	138, 493, 679
Bst2UI	CCWGG	2 cut(s)	149, 684
Bst4CI	ACNGT	2 cut(s)	387, 449
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	141, 496, 682
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	138, 493, 679
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 65, 98, 164, 278, 309, 378
BstNI	CCWGG	2 cut(s)	149, 684
BstSCI	CCNGG	2 cut(s)	147, 682
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	71, 139, 142, 281, 424
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	303, 488, 619
BtgI	CCRYGG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 651
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	234, 401
Csp6I	GTAC	1 cut(s)	388
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	4 cut(s)	284, 293, 369, 417
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	3 cut(s)	140, 495, 681
DpnII	GATC	3 cut(s)	138, 493, 679
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	234, 401
EcoRII	CCWGG	2 cut(s)	147, 682
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	4 cut(s)	287, 296, 372, 420
FaiI	YATR	8 cut(s)	285, 294, 317, 340, 370, 418, 432, 554
FatI	CATG	4 cut(s)	283, 292, 368, 416
Fnu4HI	GCNGC	5 cut(s)	60, 153, 156, 270, 438
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	60, 153, 156, 270, 438
FspBI	CTAG	3 cut(s)	15, 378, 626
GluI	GCNGC	5 cut(s)	60, 153, 156, 270, 438
HaeIII	GGCC	3 cut(s)	303, 488, 619
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	4 cut(s)	287, 296, 372, 420
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	2 cut(s)	251, 479
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	119, 280, 465
Hpy166II	GTNNAC	3 cut(s)	211, 401, 643
Hpy188I	TCNGA	3 cut(s)	223, 357, 493
Hpy188III	TCNNGA	3 cut(s)	200, 332, 511
Hpy8I	GTNNAC	3 cut(s)	211, 401, 643
HpyCH4III	ACNGT	2 cut(s)	387, 449
HpyCH4IV	ACGT	2 cut(s)	259, 397
HpyCH4V	TGCA	7 cut(s)	44, 59, 158, 269, 372, 506, 518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 65, 98, 164, 278, 309, 378
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	259, 397
Hsp92II	CATG	4 cut(s)	287, 296, 372, 420
Kzo9I	GATC	3 cut(s)	138, 493, 679
LmnI	GCTCC	4 cut(s)	65, 434, 569, 668
Lsp1109I	GCAGC	5 cut(s)	71, 139, 142, 281, 424
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	15, 378, 626
MaeII	ACGT	2 cut(s)	259, 397
MaeIII	GTNAC	4 cut(s)	85, 115, 286, 332
MalI	GATC	3 cut(s)	140, 495, 681
MboI	GATC	3 cut(s)	138, 493, 679
MboII	GAAGA	2 cut(s)	121, 332
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	22, 264, 576
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	3 cut(s)	246, 335, 433
MnlI	CCTC	4 cut(s)	38, 47, 414, 499
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	2 cut(s)	467, 588
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	149, 684
Mva1269I	GAATGC	2 cut(s)	125, 506
MvaI	CCWGG	2 cut(s)	149, 684
MwoI	GCNNNNNNNGC	7 cut(s)	56, 65, 98, 164, 278, 309, 378
NdeII	GATC	3 cut(s)	138, 493, 679
NlaIII	CATG	4 cut(s)	287, 296, 372, 420
NlaIV	GGNNCC	2 cut(s)	67, 571
NmuCI	GTSAC	3 cut(s)	115, 286, 332
PceI	AGGCCT	1 cut(s)	619
PctI	GAATGC	2 cut(s)	125, 506
PfeI	GAWTC	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	5 cut(s)	61, 154, 157, 271, 439
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	147, 682
PspGI	CCWGG	2 cut(s)	147, 682
PspN4I	GGNNCC	2 cut(s)	67, 571
PspPI	GGNCC	2 cut(s)	234, 401
PstI	CTGCAG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	467, 588
SatI	GCNGC	5 cut(s)	60, 153, 156, 270, 438
Sau3AI	GATC	3 cut(s)	138, 493, 679
Sau96I	GGNCC	2 cut(s)	234, 401
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	149, 684
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	234, 401
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	22, 264, 576
SseBI	AGGCCT	1 cut(s)	619
SsiI	CCGC	2 cut(s)	101, 245
SspMI	CTAG	3 cut(s)	15, 378, 626
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	147, 682
TaaI	ACNGT	2 cut(s)	387, 449
TaiI	ACGT	2 cut(s)	262, 400
TaqI	TCGA	2 cut(s)	132, 580
TasI	AATT	3 cut(s)	22, 264, 576
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	467, 588
Tru9I	TTAA	2 cut(s)	467, 588
TscAI	CASTG	2 cut(s)	51, 658
TseFI	GTSAC	3 cut(s)	115, 286, 332
TseI	GCWGC	5 cut(s)	59, 152, 155, 269, 437
Tsp45I	GTSAC	3 cut(s)	115, 286, 332
TspGWI	ACGGA	3 cut(s)	408, 472, 533
TspRI	CASTG	2 cut(s)	51, 658
VpaK11BI	GGWCC	2 cut(s)	234, 401
VspI	ATTAAT	1 cut(s)	588
XspI	CTAG	3 cut(s)	15, 378, 626
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.