Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

5921762 .. 5923142

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTTTCTACAATACAACAAAATACCTTACAAGCGTCATTGCACTAGTATTTGTAGCTGGAGCACTGCTAAACAATGCGACAGCACAAAATTGTGGCTGTGCCCCAGACCTATGTTGTAGCCAATATGGCTATTGCGGCACCGGCAATGATTACTGCGGCCAGGGTTGTAAACAAGGTCCTTGTACTGGCAGCGGCGGCACACCAACCACACCGAGTGGTTCGTCAGTGGCTGATATAGTAACTCCAGCTTTCTTCAATGGGATCATAAGCCAGGCTTCTTCAGACTGTGCCGGGAAGAACTTCTACTCTCGAGGGGGTTTTCTTGACGCTGTCAACTCATATTCCGACTTTGGTAGACTTGGTTCGGTTGACGACTCTAAACGCGAAATTGCAGCTTTCTTTGCTCATGTCACTCATGAGACAGGGCATTTTTGCTACATTGAAGAGATAAATCGTGGAACCTACTGCGACACAACCCGAACAGACTATCCATGCAACCCCAACAAACAATACTACGGGCGTGGACCACTCCAACTAACATGGAACTACAATTATGGAGCTGCTGGAAACAGCATTGGCTTTGACGGCCTAAACTCTCCTGAAACCGTGGCCTCAGACGCTGCTGTTGCATTCAAGACGGCCTTGTGGTTTTGGATGAACAATGTTCGTCCTGTTGTAAGCCAAGGATTCGGAGCTACAATCCGAGCCATTAATGGTGCTGTGGAATGCGATGGCAAAGAACCTGGAAAAGTTCAAGCCCGGATCAACTATTACAATGATTATTGCACCCAACTTAATGTTAATCCTGGCGGTAATCTCTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

277

Amino Acids

29.54

Weight (kDa)

5.32

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	387
AciI	CCGC	5 cut(s)	138, 159, 195, 198, 813
AclWI	GGATC	2 cut(s)	272, 773
AcoI	YGGCCR	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	259, 446, 637, 758
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	4 cut(s)	162, 273, 745, 808
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	59, 251, 398, 563, 698
AluI	AGCT	5 cut(s)	59, 251, 398, 563, 698
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	272, 773
AlwNI	CAGNNNCTG	2 cut(s)	233, 623
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	4 cut(s)	160, 589, 612, 642
ApeKI	GCWGC	4 cut(s)	192, 395, 563, 623
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	179, 527
AsuC2I	CCSGG	2 cut(s)	295, 763
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	2 cut(s)	179, 527
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	204, 407, 550, 610
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	2 cut(s)	604, 657
BciT130I	CCWGG	4 cut(s)	164, 275, 747, 810
BcnI	CCSGG	2 cut(s)	295, 763
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 829
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	8 cut(s)	139, 160, 193, 196, 199, 396, 564, 624
BlsI	GCNGC	8 cut(s)	140, 161, 194, 197, 200, 397, 565, 625
Bme1390I	CCNGG	6 cut(s)	164, 275, 295, 747, 763, 810
Bme18I	GGWCC	2 cut(s)	179, 527
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	179, 527
BmiI	GGNNCC	2 cut(s)	142, 463
BmrFI	CCNGG	6 cut(s)	164, 275, 295, 747, 763, 810
BpmI	CTGGAG	2 cut(s)	81, 231
BpuMI	CCSGG	2 cut(s)	295, 763
BsaJI	CCNNGG	3 cut(s)	163, 609, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	39, 154
BseBI	CCWGG	4 cut(s)	164, 275, 747, 810
BseDI	CCNNGG	3 cut(s)	163, 609, 685
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	2 cut(s)	39, 154
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	204, 407, 550, 610
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	162, 591, 614, 644
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	144, 294, 763
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	632, 734
BsnI	GGCC	4 cut(s)	162, 591, 614, 644
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	67, 106
Bsp143I	GATC	2 cut(s)	264, 765
BspACI	CCGC	5 cut(s)	138, 159, 195, 198, 813
BspANI	GGCC	4 cut(s)	162, 591, 614, 644
BspCNI	CTCAG	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	142, 463
BspPI	GGATC	2 cut(s)	272, 773
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	39, 154
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	163, 609, 685
BssMI	GATC	2 cut(s)	264, 765
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	4 cut(s)	164, 275, 747, 810
Bst4CI	ACNGT	2 cut(s)	290, 610
Bst6I	CTCTTC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	267, 768
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	264, 765
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 138, 144, 198, 404, 588, 620, 629
BstNI	CCWGG	4 cut(s)	164, 275, 747, 810
BstSCI	CCNGG	6 cut(s)	162, 273, 293, 745, 761, 808
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	204, 407, 550, 610
BsuRI	GGCC	4 cut(s)	162, 591, 614, 644
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 234
CaiI	CAGNNNCTG	2 cut(s)	233, 623
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	179, 527
CseI	GACGC	3 cut(s)	25, 338, 629
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	4 cut(s)	410, 419, 495, 543
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	2 cut(s)	266, 767
DpnII	GATC	2 cut(s)	264, 765
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	179, 527
Eco57I	CTGAAG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	162, 273, 745, 808
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	4 cut(s)	413, 422, 498, 546
FalI	AAGNNNNNCTT	4 cut(s)	262, 294, 629, 661
FatI	CATG	4 cut(s)	409, 418, 494, 542
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	139, 160, 193, 196, 199, 396, 564, 624
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	8 cut(s)	139, 160, 193, 196, 199, 396, 564, 624
FspBI	CTAG	2 cut(s)	47, 829
GluI	GCNGC	8 cut(s)	139, 160, 193, 196, 199, 396, 564, 624
GsuI	CTGGAG	2 cut(s)	81, 231
HaeIII	GGCC	4 cut(s)	162, 591, 614, 644
HapII	CCGG	3 cut(s)	144, 294, 763
HgaI	GACGC	3 cut(s)	25, 338, 629
Hin1II	CATG	4 cut(s)	413, 422, 498, 546
HincII	GTYRAC	2 cut(s)	337, 373
HindII	GTYRAC	2 cut(s)	337, 373
HinfI	GANTC	2 cut(s)	377, 690
HpaII	CCGG	3 cut(s)	144, 294, 763
Hpy166II	GTNNAC	5 cut(s)	173, 337, 359, 373, 527
Hpy188I	TCNGA	5 cut(s)	286, 349, 619, 695, 707
Hpy188III	TCNNGA	5 cut(s)	312, 326, 419, 602, 637
Hpy8I	GTNNAC	5 cut(s)	173, 337, 359, 373, 527
HpyCH4III	ACNGT	2 cut(s)	290, 610
HpyCH4V	TGCA	5 cut(s)	44, 395, 498, 632, 789
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 138, 144, 198, 404, 588, 620, 629
HpyF3I	CTNAG	1 cut(s)	616
Hsp92II	CATG	4 cut(s)	413, 422, 498, 546
Kzo9I	GATC	2 cut(s)	264, 765
LmnI	GCTCC	3 cut(s)	62, 560, 695
Lsp1109I	GCAGC	4 cut(s)	204, 407, 550, 610
MaeI	CTAG	2 cut(s)	47, 829
MaeIII	GTNAC	2 cut(s)	241, 412
MalI	GATC	2 cut(s)	266, 767
MboI	GATC	2 cut(s)	264, 765
MboII	GAAGA	4 cut(s)	247, 273, 310, 458
MhlI	GDGCHC	2 cut(s)	67, 106
MluCI	AATT	3 cut(s)	91, 390, 553
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	372, 559
MnlI	CCTC	2 cut(s)	308, 625
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	3 cut(s)	714, 798, 804
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	144, 294, 763
MspR9I	CCNGG	6 cut(s)	164, 275, 295, 747, 763, 810
Mva1269I	GAATGC	2 cut(s)	632, 734
MvaI	CCWGG	4 cut(s)	164, 275, 747, 810
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	8 cut(s)	129, 138, 144, 198, 404, 588, 620, 629
NciI	CCSGG	2 cut(s)	295, 763
NdeII	GATC	2 cut(s)	264, 765
NlaIII	CATG	4 cut(s)	413, 422, 498, 546
NlaIV	GGNNCC	2 cut(s)	142, 463
NmuCI	GTSAC	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	312
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	2 cut(s)	632, 734
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	690
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	8 cut(s)	140, 161, 194, 197, 200, 397, 565, 625
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	162, 273, 745, 808
PspGI	CCWGG	4 cut(s)	162, 273, 745, 808
PspN4I	GGNNCC	2 cut(s)	142, 463
PspPI	GGNCC	2 cut(s)	179, 527
PspPPI	RGGWCCY	1 cut(s)	179
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PstNI	CAGNNNCTG	2 cut(s)	233, 623
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	714, 798, 804
SatI	GCNGC	8 cut(s)	139, 160, 193, 196, 199, 396, 564, 624
Sau3AI	GATC	2 cut(s)	264, 765
Sau96I	GGNCC	2 cut(s)	179, 527
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	6 cut(s)	164, 275, 295, 747, 763, 810
SduI	GDGCHC	2 cut(s)	67, 106
Sfr274I	CTCGAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	179, 527
SlaI	CTCGAG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	3 cut(s)	91, 390, 553
SsiI	CCGC	5 cut(s)	138, 159, 195, 198, 813
SspMI	CTAG	2 cut(s)	47, 829
StyD4I	CCNGG	6 cut(s)	162, 273, 293, 745, 761, 808
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	2 cut(s)	290, 610
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	91, 390, 553
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	4 cut(s)	141, 162, 198, 201
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	3 cut(s)	714, 798, 804
Tru9I	TTAA	3 cut(s)	714, 798, 804
TscAI	CASTG	2 cut(s)	72, 234
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	4 cut(s)	192, 395, 563, 623
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	72, 234
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	179, 527
VspI	ATTAAT	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	47, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.