Rorug05G0012300

Endochitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001782
Physical Location & Seq
Reverse (-)
766156 .. 766761
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0012300.1

Sequence Viewer

Length: 606 bp
ATGAAACCCTCTCACCGCCGCAGACTCAGCTTCTCCTCCACCGCCACCGTCACCTACACTCTCCGCAATGACCAACCTGCCCCTCCCACCTCCACCAAAAACCCCACCCCGATTCCGATCACCGTACACGTACCGCAGTCCACCGCCGCCGTCAAAATCCAATCGGCCTACCGGAGCCACCTGATCCGCAGCCTCTACAGGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGGCAGGAGACGGTCGACGCCGTGAGGAGCAGCGAGCGGGAGAAGCTGACGATGAACGAGGCGCTGATGAAGTTGCTACTGAGATTGGACTCCGTGCCCGGGGTGGACCCCACGGTGAGGGAGGCGAGGAGGAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGGAGATGGAGGAGGGGGTGTGTAGGGAGAGAGGAGGTGAGGAAATGGAGAGGTTTTGTGCTGAGTATTTGGGGTTTCGCTGCTTACAGAGGTTTCTAAGTCAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

201

Amino Acids

22.96

Weight (kDa)

8.49

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 69 - 143 1.2e-14 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 85
AccBSI CCGCTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 209, 428
AclWI GGATC 3 cut(s) 178, 241, 407
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 2 cut(s) 270, 489
AfaI GTAC 2 cut(s) 126, 132
AfiI CCNNNNNNNGG 4 cut(s) 223, 256, 351, 369
AflIII ACRYGT 1 cut(s) 127
AjiI CACGTC 1 cut(s) 445
AluBI AGCT 2 cut(s) 30, 298
AluI AGCT 2 cut(s) 30, 298
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 3 cut(s) 178, 241, 407
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 3 cut(s) 165, 210, 225
ApeKI GCWGC 4 cut(s) 189, 282, 409, 576
AspLEI GCGC 2 cut(s) 243, 316
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 2 cut(s) 351, 352
AsuHPI GGTGA 6 cut(s) 5, 43, 112, 379, 400, 545
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 201, 294, 396, 563
BccI CCATC 1 cut(s) 496
BceAI ACGGC 6 cut(s) 134, 197, 257, 269, 378, 586
BcnI CCSGG 2 cut(s) 351, 352
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 196, 410
BfoI RGCGCY 2 cut(s) 244, 317
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 7 cut(s) 19, 147, 190, 210, 283, 410, 577
BlsI GCNGC 7 cut(s) 20, 148, 191, 211, 284, 411, 578
Bme1390I CCNGG 2 cut(s) 351, 352
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 176, 360
BmrFI CCNGG 2 cut(s) 351, 352
BpiI GAAGAC 1 cut(s) 447
BpuMI CCSGG 2 cut(s) 351, 352
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 270, 489
BsaJI CCNNGG 4 cut(s) 222, 350, 351, 363
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 256, 351, 369
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 4 cut(s) 222, 350, 351, 363
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 4 cut(s) 223, 256, 351, 369
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 40, 323, 549
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 5 cut(s) 25, 292, 394, 521, 543
BseSI GKGCMC 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 201, 294, 396, 563
Bsh1236I CGCG 2 cut(s) 209, 428
Bsh1285I CGRYCG 2 cut(s) 213, 267
BshFI GGCC 3 cut(s) 167, 212, 227
BsiEI CGRYCG 2 cut(s) 213, 267
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 172, 351
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 4 cut(s) 223, 256, 351, 369
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 3 cut(s) 167, 212, 227
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 117, 183, 246, 399, 417
BspANI GGCC 3 cut(s) 167, 212, 227
BspCNI CTCAG 3 cut(s) 39, 324, 550
BspFNI CGCG 2 cut(s) 209, 428
BspLI GGNNCC 2 cut(s) 176, 360
BspMAI CTGCAG 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 3 cut(s) 178, 241, 407
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 4 cut(s) 222, 350, 351, 363
BssMI GATC 5 cut(s) 117, 183, 246, 399, 417
BssNI GRCGYC 2 cut(s) 270, 489
Bst4CI ACNGT 4 cut(s) 49, 124, 265, 367
BstACI GRCGYC 2 cut(s) 270, 489
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 26, 332, 558, 593
BstDSI CCRYGG 1 cut(s) 363
BstFNI CGCG 2 cut(s) 209, 428
BstH2I RGCGCY 2 cut(s) 244, 317
BstHHI GCGC 2 cut(s) 243, 316
BstKTI GATC 5 cut(s) 120, 186, 249, 402, 420
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 5 cut(s) 117, 183, 246, 399, 417
BstMCI CGRYCG 2 cut(s) 213, 267
BstMWI GCNNNNNNNGC 2 cut(s) 27, 295
BstSCI CCNGG 2 cut(s) 349, 350
BstSFI CTRYAG 2 cut(s) 196, 410
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 2 cut(s) 209, 428
BstV1I GCAGC 4 cut(s) 201, 294, 396, 563
BstV2I GAAGAC 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 3 cut(s) 167, 212, 227
BtgI CCRYGG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 445
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 2 cut(s) 243, 316
Cfr13I GGNCC 1 cut(s) 358
Cfr9I CCCGGG 1 cut(s) 350
CseI GACGC 2 cut(s) 278, 434
Csp6I GTAC 2 cut(s) 125, 131
CviQI GTAC 2 cut(s) 125, 131
DdeI CTNAG 4 cut(s) 26, 332, 558, 593
DpnI GATC 5 cut(s) 119, 185, 248, 401, 419
DpnII GATC 5 cut(s) 117, 183, 246, 399, 417
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
EciI GGCGGA 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 254
FaqI GGGAC 1 cut(s) 488
FauI CCCGC 1 cut(s) 282
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 7 cut(s) 19, 147, 190, 210, 283, 410, 577
Fsp4HI GCNGC 7 cut(s) 19, 147, 190, 210, 283, 410, 577
GlaI GCGC 2 cut(s) 242, 315
GluI GCNGC 7 cut(s) 19, 147, 190, 210, 283, 410, 577
HaeII RGCGCY 2 cut(s) 244, 317
HaeIII GGCC 3 cut(s) 167, 212, 227
HapII CCGG 2 cut(s) 172, 351
HgaI GACGC 2 cut(s) 278, 434
HhaI GCGC 2 cut(s) 243, 316
Hin1I GRCGYC 2 cut(s) 270, 489
Hin6I GCGC 2 cut(s) 241, 314
HinP1I GCGC 2 cut(s) 241, 314
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 24, 112, 341
HpaII CCGG 2 cut(s) 172, 351
HphI GGTGA 6 cut(s) 5, 43, 112, 379, 400, 545
Hpy166II GTNNAC 5 cut(s) 127, 141, 268, 358, 424
Hpy188I TCNGA 3 cut(s) 117, 223, 399
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 5 cut(s) 127, 141, 268, 358, 424
Hpy99I CGWCG 5 cut(s) 233, 272, 399, 491, 494
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 4 cut(s) 49, 124, 265, 367
HpyCH4IV ACGT 3 cut(s) 129, 444, 489
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 295
HpyF3I CTNAG 4 cut(s) 26, 332, 558, 593
HpySE526I ACGT 3 cut(s) 129, 444, 489
Hsp92I GRCGYC 2 cut(s) 270, 489
HspAI GCGC 2 cut(s) 241, 314
Kzo9I GATC 5 cut(s) 117, 183, 246, 399, 417
LmnI GCTCC 2 cut(s) 174, 279
Lsp1109I GCAGC 4 cut(s) 201, 294, 396, 563
MaeII ACGT 3 cut(s) 129, 444, 489
MaeIII GTNAC 1 cut(s) 49
MalI GATC 5 cut(s) 119, 185, 248, 401, 419
MbiI CCGCTC 1 cut(s) 289
MboI GATC 5 cut(s) 117, 183, 246, 399, 417
MboII GAAGA 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 351
MlyI GAGTC 2 cut(s) 18, 335
MmeI TCCRAC 2 cut(s) 274, 377
MspI CCGG 2 cut(s) 172, 351
MspR9I CCNGG 2 cut(s) 351, 352
MvnI CGCG 2 cut(s) 209, 428
MwoI GCNNNNNNNGC 2 cut(s) 27, 295
NciI CCSGG 2 cut(s) 351, 352
NdeII GATC 5 cut(s) 117, 183, 246, 399, 417
NlaIV GGNNCC 2 cut(s) 176, 360
NmuCI GTSAC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 7 cut(s) 20, 148, 191, 211, 284, 411, 578
PleI GAGTC 2 cut(s) 18, 335
PpsI GAGTC 2 cut(s) 18, 335
Ppu21I YACGTR 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 176, 360
PspPI GGNCC 1 cut(s) 358
PstI CTGCAG 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 244
RsaI GTAC 2 cut(s) 126, 132
RsaNI GTAC 2 cut(s) 125, 131
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 7 cut(s) 19, 147, 190, 210, 283, 410, 577
Sau3AI GATC 5 cut(s) 117, 183, 246, 399, 417
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 18, 335
ScrFI CCNGG 2 cut(s) 351, 352
SduI GDGCHC 1 cut(s) 351
SfcI CTRYAG 2 cut(s) 196, 410
SinI GGWCC 1 cut(s) 358
SmaI CCCGGG 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 349, 350
TaaI ACNGT 4 cut(s) 49, 124, 265, 367
TaiI ACGT 3 cut(s) 132, 447, 492
TaqI TCGA 1 cut(s) 267
TauI GCSGC 3 cut(s) 21, 149, 212
TfiI GAWTC 1 cut(s) 112
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 4 cut(s) 189, 282, 409, 576
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 17, 320, 335
TspGWI ACGGA 1 cut(s) 334
TspMI CCCGGG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 358
XmaI CCCGGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 267
ZraI GACGTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.