Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

25761596 .. 25765289

Gene Structure 3694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTCTCGGTCAATTCTCAGTTTGATGTATTCATTGTTGTTGGTGTTGTAGGGAAGAAGCCCATAGGGCTGGATAGCACCAGTTGGCTTTTTGTGGTTCGTGAGGTGAGATTGGGGAAGAATGGTGTGGCGAATGTTTTAGAATTGGGTCCTGCCTGTGTTGCAGCGAATTTGGTTACTGTGGCACCGGTGATGCCTACTGCGGCAAGGGTTGTAAAGAAGGCTTTTCTCGATGCCCTCGGCTCTTATGGTGATTTCGGTACCACCGGTTCCGCTGATGACAATAAGCGGGAAGTTGCAGCGCTGTTTGCTCATGTCACGCATGAGACTGGCCATTTTTGCTACATAGAAGAGATAAAGAAGGACATCTACTGCGACACGAGTAAAACAGAGTACCCATGCAACCCCAACAAGCAGTACTACGGGCGTGGACCACTCCAGCTCACCTGGAACTACAATTACGGACCTGCCGGAAATGCCATTGGCTTTGACGGTCTGAACTCCCCCGAAACGGTGGCTACAGACCCCGTGGTGGCGTTCAAAACGGGCTTGTGGTTTTGGATGACCAATGTGCACTCCGTTATAGGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGACGTGGAATGTGATGGCAAAGCTCCGGACAAAGTTCAAGCTCGCGTCAACTATTATAATGACTACTGCACCCAACTTAATGTTTCTCCGGGTGACAATCTCTATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

244

Amino Acids

26.47

Weight (kDa)

5.55

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	74 - 191	1.1e-34	Chitinase class I
Glyco_hydro_19	PF00182	198 - 244	3.5e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	475
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	184, 260
AccII	CGCG	1 cut(s)	669
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	3 cut(s)	203, 273, 289
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	3 cut(s)	262, 395, 419
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	511, 532
AgeI	ACCGGT	2 cut(s)	187, 266
AgsI	TTSAA	2 cut(s)	541, 662
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	442, 647, 665
AluI	AGCT	3 cut(s)	442, 647, 665
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	609
Aor13HI	TCCGGA	1 cut(s)	649
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	331, 586
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	164, 299
ApoI	RAATTY	1 cut(s)	169
AsiGI	ACCGGT	2 cut(s)	187, 266
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	149, 431, 464
AsuC2I	CCSGG	1 cut(s)	714
AsuHPI	GGTGA	6 cut(s)	118, 202, 263, 436, 635, 728
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	3 cut(s)	149, 431, 464
BaeGI	GKGCMC	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	184, 260
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BauI	CACGAG	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	176, 311
BccI	CCATC	2 cut(s)	623, 632
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	714
BcoDI	GTCTC	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	165, 204, 300
BlsI	GCNGC	3 cut(s)	166, 205, 301
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	448, 714
Bme18I	GGWCC	3 cut(s)	149, 431, 464
BmeT110I	CYCGRG	1 cut(s)	609
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	149, 431, 464
BmiI	GGNNCC	5 cut(s)	150, 186, 262, 271, 601
BmrFI	CCNGG	2 cut(s)	448, 714
BmsI	GCATC	2 cut(s)	183, 223
BpmI	CTGGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	238, 528, 589
BsaWI	WCCGGW	3 cut(s)	187, 266, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 532
Bse118I	RCCGGY	2 cut(s)	187, 266
Bse1I	ACTGG	2 cut(s)	81, 334
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	238, 528, 589
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	511, 532
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	81, 334
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	176, 311
BsgI	GTGCAG	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	2 cut(s)	333, 588
BshNI	GGYRCC	2 cut(s)	184, 260
BshTI	ACCGGT	2 cut(s)	187, 266
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	5 cut(s)	188, 267, 471, 650, 713
BslI	CCNNNNNNNGG	2 cut(s)	511, 532
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	333, 588
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp13I	TCCGGA	1 cut(s)	649
BspACI	CCGC	3 cut(s)	203, 273, 289
BspANI	GGCC	2 cut(s)	333, 588
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	5 cut(s)	150, 186, 262, 271, 601
BspMI	ACCTGC	1 cut(s)	475
BspT107I	GGYRCC	2 cut(s)	184, 260
BsrFI	RCCGGY	2 cut(s)	187, 266
BsrI	ACTGG	2 cut(s)	81, 334
BssAI	RCCGGY	2 cut(s)	187, 266
BssECI	CCNNGG	3 cut(s)	238, 528, 589
BssSI	CACGAG	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	4 cut(s)	181, 494, 514, 623
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	567
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 161, 308, 339, 476
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	446, 712
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	176, 311
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	333, 588
BtgI	CCRYGG	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	187, 266
Cfr13I	GGNCC	3 cut(s)	149, 431, 464
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	3 cut(s)	261, 394, 418
CspAI	ACCGGT	2 cut(s)	187, 266
CviAII	CATG	3 cut(s)	314, 323, 399
CviQI	GTAC	3 cut(s)	261, 394, 418
DdeI	CTNAG	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	589
Eco47I	GGWCC	3 cut(s)	149, 431, 464
Eco47III	AGCGCT	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	3 cut(s)	317, 326, 402
FaiI	YATR	8 cut(s)	65, 249, 315, 324, 347, 400, 584, 681
FatI	CATG	3 cut(s)	313, 322, 398
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	165, 204, 300
FokI	GGATG	1 cut(s)	574
Fsp4HI	GCNGC	3 cut(s)	165, 204, 300
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	165, 204, 300
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	333, 588
HapII	CCGG	5 cut(s)	188, 267, 471, 650, 713
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	317, 326, 402
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	1 cut(s)	594
HpaII	CCGG	5 cut(s)	188, 267, 471, 650, 713
HphI	GGTGA	6 cut(s)	118, 202, 263, 436, 635, 728
Hpy166II	GTNNAC	3 cut(s)	431, 574, 673
Hpy188I	TCNGA	2 cut(s)	498, 599
Hpy188III	TCNNGA	3 cut(s)	101, 230, 650
Hpy8I	GTNNAC	3 cut(s)	431, 574, 673
HpyAV	CCTTC	2 cut(s)	214, 355
HpyCH4III	ACNGT	4 cut(s)	181, 494, 514, 623
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	5 cut(s)	164, 299, 402, 574, 693
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 161, 308, 339, 476
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	3 cut(s)	317, 326, 402
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	649
KpnI	GGTACC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	599, 652
Lsp1109I	GCAGC	2 cut(s)	176, 311
LweI	GCATC	2 cut(s)	183, 223
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	4 cut(s)	175, 316, 623, 716
MboII	GAAGA	3 cut(s)	67, 130, 362
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	4 cut(s)	13, 143, 169, 457
MluNI	TGGCCA	1 cut(s)	333
MnlI	CCTC	2 cut(s)	97, 248
Mox20I	TGGCCA	1 cut(s)	333
MroI	TCCGGA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	5 cut(s)	188, 267, 471, 650, 713
MspR9I	CCNGG	2 cut(s)	448, 714
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	5 cut(s)	67, 161, 308, 339, 476
NciI	CCSGG	1 cut(s)	714
NlaIII	CATG	3 cut(s)	317, 326, 402
NlaIV	GGNNCC	5 cut(s)	150, 186, 262, 271, 601
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	3 cut(s)	316, 623, 716
PaeR7I	CTCGAG	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	594
PinAI	ACCGGT	2 cut(s)	187, 266
PkrI	GCNGC	3 cut(s)	166, 205, 301
PpuMI	RGGWCCY	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	5 cut(s)	150, 186, 262, 271, 601
PspPI	GGNCC	3 cut(s)	149, 431, 464
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	609
PsrI	GAACNNNNNNTAC	4 cut(s)	253, 285, 443, 475
RsaI	GTAC	3 cut(s)	262, 395, 419
RsaNI	GTAC	3 cut(s)	261, 394, 418
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	3 cut(s)	165, 204, 300
Sau96I	GGNCC	3 cut(s)	149, 431, 464
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	448, 714
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	7 cut(s)	108, 444, 449, 469, 630, 649, 667
SfaNI	GCATC	2 cut(s)	183, 223
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	609
SgrAI	CRCCGGYG	1 cut(s)	187
SinI	GGWCC	3 cut(s)	149, 431, 464
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	13, 143, 169, 457
SsiI	CCGC	3 cut(s)	203, 273, 289
StyD4I	CCNGG	2 cut(s)	446, 712
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	4 cut(s)	181, 494, 514, 623
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	231, 610
TasI	AATT	4 cut(s)	13, 143, 169, 457
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TseFI	GTSAC	3 cut(s)	316, 623, 716
TseI	GCWGC	2 cut(s)	164, 299
Tsp45I	GTSAC	3 cut(s)	316, 623, 716
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	2 cut(s)	477, 568
VneI	GTGCAC	1 cut(s)	572
VpaK11BI	GGWCC	3 cut(s)	149, 431, 464
XapI	RAATTY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.