Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

25683986 .. 25685041

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTTCCAAGTTGCAGTCTTCACCATCCTAGGGCTAGCATTTGTAGCCCAAATTGCTGTTGCTCAAAACGTGGCAGATATCGTTACAGATGACTTCTTCAACGGGATTATTAACCAAGCTGCCGCTGATTGTGCCGGCAAGAGCTTCTACACCAGACAGGCTTTTCTCGATGCCGTAGGCTCTTACCCCGATTTCGGTACCTCCGGTTCCGCTGATGACAATAAACGGGAAATTGCAGCTTTCTTTGCTCACGTCACTCATGAGACTGGCCATTTTTGCTACATTGAAGAGATAAATAAGGACACCTACTGCGACCCGGACAGAACTGCAGAATACCCATGCAACCCCAGCAAGCAGTACTACGGGCGTGGACCACTCCAGCTCACCTGGAACTACAATTACGGAGCTGCCGGAAATGCCATTGGCTTTGACGGCTTGAACTCCCGAAACGGTGGCTCAAGACCCCGTGATAGCATTCAAGACAGCCTTGTGGTATTGGATGACCAATGTTCACTCCGTTATAGGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGCTGTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

192

Amino Acids

21.18

Weight (kDa)

5.43

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	28 - 149	1.3e-28	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	2 cut(s)	126, 213
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	202, 362
AfiI	CCNNNNNNNGG	2 cut(s)	33, 197
AgsI	TTSAA	4 cut(s)	103, 290, 442, 482
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	5 cut(s)	122, 147, 242, 385, 410
AluI	AGCT	5 cut(s)	122, 147, 242, 385, 410
Alw26I	GTCTC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	2 cut(s)	271, 527
ApeKI	GCWGC	3 cut(s)	122, 239, 410
Asp718I	GGTACC	1 cut(s)	200
AspA2I	CCTAGG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	16, 379
AsuNHI	GCTAGC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	374
AvrII	CCTAGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	109, 251, 397
BccI	CCATC	2 cut(s)	35, 564
BceAI	ACGGC	2 cut(s)	161, 451
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	32, 38
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	123, 126, 240, 411
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	4 cut(s)	124, 127, 241, 412
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	320, 391
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	202, 211, 542
BmrFI	CCNGG	2 cut(s)	320, 391
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	31, 530
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 197
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	31, 530
BseGI	GGATG	2 cut(s)	27, 508
BseLI	CCNNNNNNNGG	2 cut(s)	33, 197
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	109, 251, 397
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	2 cut(s)	273, 529
BshNI	GGYRCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	4 cut(s)	138, 207, 320, 414
BslI	CCNNNNNNNGG	2 cut(s)	33, 197
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	273, 529
BsoBI	CYCGRG	1 cut(s)	550
BspACI	CCGC	2 cut(s)	126, 213
BspANI	GGCC	2 cut(s)	273, 529
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	202, 211, 542
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	31, 530
BssT1I	CCWWGG	2 cut(s)	31, 530
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	455, 564
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	39, 139, 356
BstF5I	GGATG	2 cut(s)	27, 508
BstMAI	GTCTC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 56, 134, 248, 279, 351, 419, 435
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	318, 389
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	109, 251, 397
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	273, 529
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	27, 508
Cac8I	GCNNGC	3 cut(s)	39, 139, 356
CciI	TCATGA	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	201, 361
CviAII	CATG	2 cut(s)	263, 342
CviQI	GTAC	2 cut(s)	201, 361
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	31, 530
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	31, 530
ErhI	CCWWGG	2 cut(s)	31, 530
FaeI	CATG	2 cut(s)	266, 345
FaiI	YATR	3 cut(s)	264, 343, 525
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FatI	CATG	2 cut(s)	262, 341
Fnu4HI	GCNGC	4 cut(s)	123, 126, 240, 411
FokI	GGATG	2 cut(s)	14, 515
Fsp4HI	GCNGC	4 cut(s)	123, 126, 240, 411
FspBI	CTAG	2 cut(s)	32, 38
GluI	GCNGC	4 cut(s)	123, 126, 240, 411
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	273, 529
HapII	CCGG	4 cut(s)	138, 207, 320, 414
Hin1II	CATG	2 cut(s)	266, 345
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	4 cut(s)	138, 207, 320, 414
HphI	GGTGA	2 cut(s)	16, 379
Hpy166II	GTNNAC	2 cut(s)	374, 515
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	5 cut(s)	170, 263, 447, 462, 482
Hpy8I	GTNNAC	2 cut(s)	374, 515
HpyCH4III	ACNGT	2 cut(s)	455, 564
HpyCH4IV	ACGT	2 cut(s)	72, 255
HpyCH4V	TGCA	4 cut(s)	17, 239, 332, 345
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 56, 134, 248, 279, 351, 419, 435
HpySE526I	ACGT	2 cut(s)	72, 255
Hsp92II	CATG	2 cut(s)	266, 345
KpnI	GGTACC	1 cut(s)	204
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	407, 540
Lsp1109I	GCAGC	3 cut(s)	109, 251, 397
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	32, 38
MaeII	ACGT	2 cut(s)	72, 255
MaeIII	GTNAC	2 cut(s)	85, 256
MboII	GAAGA	3 cut(s)	13, 91, 302
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	3 cut(s)	54, 234, 400
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	128, 215
MspI	CCGG	4 cut(s)	138, 207, 320, 414
MspR9I	CCNGG	2 cut(s)	320, 391
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	8 cut(s)	47, 56, 134, 248, 279, 351, 419, 435
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	320
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	266, 345
NlaIV	GGNNCC	3 cut(s)	202, 211, 542
NmuCI	GTSAC	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	550
PagI	TCATGA	1 cut(s)	262
PctI	GAATGC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	124, 127, 241, 412
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	202, 211, 542
PspPI	GGNCC	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	550
PsrI	GAACNNNNNNTAC	4 cut(s)	193, 225, 386, 418
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	202, 362
RsaNI	GTAC	2 cut(s)	201, 361
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	123, 126, 240, 411
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	320, 391
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	550
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	550
SmlI	CTYRAG	2 cut(s)	460, 550
SmoI	CTYRAG	2 cut(s)	460, 550
Sse9I	AATT	3 cut(s)	54, 234, 400
SsiI	CCGC	2 cut(s)	126, 213
SspMI	CTAG	2 cut(s)	32, 38
StyD4I	CCNGG	2 cut(s)	318, 389
StyI	CCWWGG	2 cut(s)	31, 530
TaaI	ACNGT	2 cut(s)	455, 564
TaiI	ACGT	2 cut(s)	75, 258
TaqI	TCGA	2 cut(s)	171, 551
TasI	AATT	3 cut(s)	54, 234, 400
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	122, 239, 410
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	2 cut(s)	420, 509
VpaK11BI	GGWCC	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	550
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	2 cut(s)	32, 38
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.