Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

10422926 .. 10423752

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTTCCAAATTGCTGTTGCTCAAAACGTGGCAGATATCGTTACAGCGGACTTCTTCAACGGGATTATTAACCAAGCTGCCGCTGATTGTGCCGGCAAGAGCTTCTACACCAGAGAGGCTTTTCTCGATGCCGTAGGCTCTTACCCCAATTTCGGTACCTCCGGTTCCGCTGATGAGAATAAACGGGAAATTGCAGCTTTCTTTGCTCATGTCACTCATGAGACTGGCCATTTTTGCTACATTGAAGAGATAAATAAGGACACCTACTGCGACGCGAGCAGCACAGACTACCCATGCAACCCCAGCAAGCAGTACTACGGGCGTGGACCACTCCAGCTCTCCTGGAACTACAATTACGGAGCTGCCGGAAATGCCATTGGCTTTGACGGCTTGAACTCCCCCGAAACGGTGGCTCAAGACCCCGTGATAGCATTCAAGACAGGCTTGTGGTATTGGATGACCAATGTTCACTCCGTTATAGGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGCAGTGGAATGTGATGGCAAATCCCCCGCCACAGTTCAAGCTCGCATCGACTATTACACTAAGTACTGCACCCAATTTAATGTTGCTCCCGGTGACAATCTCTCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

210

Amino Acids

22.78

Weight (kDa)

4.71

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	14 - 157	2e-42	Chitinase class I
Glyco_hydro_19	PF00182	164 - 210	2.1e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	50, 84, 171, 549
AcoI	YGGCCR	1 cut(s)	229
AfaI	GTAC	3 cut(s)	160, 317, 587
AfiI	CCNNNNNNNGG	2 cut(s)	155, 409
AgsI	TTSAA	5 cut(s)	61, 248, 397, 439, 560
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	6 cut(s)	80, 105, 200, 340, 365, 563
AluI	AGCT	6 cut(s)	80, 105, 200, 340, 365, 563
Alw26I	GTCTC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	229, 484
ApeKI	GCWGC	4 cut(s)	80, 197, 282, 365
Asp718I	GGTACC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	67, 209, 294, 352
BccI	CCATC	2 cut(s)	521, 530
BceAI	ACGGC	2 cut(s)	119, 406
BciT130I	CCWGG	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	631
BisI	GCNGC	5 cut(s)	81, 84, 198, 283, 366
BlsI	GCNGC	5 cut(s)	82, 85, 199, 284, 367
BmcAI	AGTACT	2 cut(s)	317, 587
Bme1390I	CCNGG	2 cut(s)	346, 612
Bme18I	GGWCC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	3 cut(s)	160, 169, 499
BmrFI	CCNGG	2 cut(s)	346, 612
BmsI	GCATC	2 cut(s)	121, 576
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 409
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	155, 409
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	4 cut(s)	67, 209, 294, 352
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	2 cut(s)	543, 574
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	231, 486
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	4 cut(s)	96, 165, 369, 612
BslI	CCNNNNNNNGG	2 cut(s)	155, 409
BsmAI	GTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	231, 486
BsoBI	CYCGRG	1 cut(s)	507
BspACI	CCGC	4 cut(s)	50, 84, 171, 549
BspANI	GGCC	2 cut(s)	231, 486
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	160, 169, 499
BspT107I	GGYRCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	412, 521, 556
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	4 cut(s)	97, 280, 311, 565
BstDEI	CTNAG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 206, 237, 279, 306, 374, 390
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	344, 610
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	67, 209, 294, 352
BsuRI	GGCC	2 cut(s)	231, 486
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	97, 280, 311, 565
CciI	TCATGA	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	159, 316, 586
CviAII	CATG	3 cut(s)	212, 221, 297
CviQI	GTAC	3 cut(s)	159, 316, 586
DdeI	CTNAG	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	215, 224, 300
FaiI	YATR	4 cut(s)	213, 222, 298, 482
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	211, 220, 296
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	5 cut(s)	81, 84, 198, 283, 366
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	5 cut(s)	81, 84, 198, 283, 366
FspBI	CTAG	1 cut(s)	631
GluI	GCNGC	5 cut(s)	81, 84, 198, 283, 366
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	231, 486
HapII	CCGG	4 cut(s)	96, 165, 369, 612
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	215, 224, 300
HinfI	GANTC	1 cut(s)	492
HpaII	CCGG	4 cut(s)	96, 165, 369, 612
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	329, 472
Hpy188I	TCNGA	1 cut(s)	497
Hpy188III	TCNNGA	4 cut(s)	128, 221, 419, 439
Hpy8I	GTNNAC	2 cut(s)	329, 472
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	412, 521, 556
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	197, 300, 524, 591
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 206, 237, 279, 306, 374, 390
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	215, 224, 300
KpnI	GGTACC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
LmnI	GCTCC	3 cut(s)	362, 497, 613
Lsp1109I	GCAGC	4 cut(s)	67, 209, 294, 352
LweI	GCATC	2 cut(s)	121, 576
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	43, 214, 614
MboII	GAAGA	2 cut(s)	49, 260
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	12, 151, 192, 355, 596
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	2 cut(s)	112, 172
Mox20I	TGGCCA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	72, 600
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	3 cut(s)	50, 86, 173
MspI	CCGG	4 cut(s)	96, 165, 369, 612
MspR9I	CCNGG	2 cut(s)	346, 612
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	7 cut(s)	92, 206, 237, 279, 306, 374, 390
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	612
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	215, 224, 300
NlaIV	GGNNCC	3 cut(s)	160, 169, 499
NmuCI	GTSAC	2 cut(s)	214, 614
PaeR7I	CTCGAG	1 cut(s)	507
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	82, 85, 199, 284, 367
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	160, 169, 499
PspPI	GGNCC	1 cut(s)	329
PspXI	VCTCGAGB	1 cut(s)	507
PsrI	GAACNNNNNNTAC	4 cut(s)	151, 183, 341, 373
RsaI	GTAC	3 cut(s)	160, 317, 587
RsaNI	GTAC	3 cut(s)	159, 316, 586
SaqAI	TTAA	2 cut(s)	72, 600
SatI	GCNGC	5 cut(s)	81, 84, 198, 283, 366
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	2 cut(s)	317, 587
ScrFI	CCNGG	2 cut(s)	346, 612
SetI	ASST	9 cut(s)	33, 82, 107, 164, 202, 269, 342, 367, 565
SfaNI	GCATC	2 cut(s)	121, 576
Sfr274I	CTCGAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	417, 507
SmoI	CTYRAG	2 cut(s)	417, 507
Sse9I	AATT	5 cut(s)	12, 151, 192, 355, 596
SsiI	CCGC	4 cut(s)	50, 84, 171, 549
SspMI	CTAG	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	344, 610
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	412, 521, 556
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	129, 508, 570
TasI	AATT	5 cut(s)	12, 151, 192, 355, 596
TatI	WGTACW	2 cut(s)	315, 585
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	72, 600
Tru9I	TTAA	2 cut(s)	72, 600
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	214, 614
TseI	GCWGC	4 cut(s)	80, 197, 282, 365
Tsp45I	GTSAC	2 cut(s)	214, 614
TspGWI	ACGGA	2 cut(s)	375, 466
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	507
XspI	CTAG	1 cut(s)	631
ZrmI	AGTACT	2 cut(s)	317, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.