Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

17520958 .. 17522624

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCCACCAAAATTTCCTTAGTCTTTTTCCTTTGCCTCGTAGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATTCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGCAAGTTCCGTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTCTGCTACATAGAAGAAATAAAGAAAAGGTCACGTGGTAGGTGCGACGAGAACGTAGAGCAGAGACCATGTCCATCACAGAGTAAAGGTCACTCCGGTCGTGGTCATCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCAGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGGATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCGGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTGGTCATAACCTTAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

214

Amino Acids

23.3

Weight (kDa)

9.32

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	33 - 161	1.2e-10	Chitinase class I
Glyco_hydro_19	PF00182	168 - 210	9.1e-07	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	604
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	172, 566
AclWI	GGATC	2 cut(s)	614, 627
AcsI	RAATTY	2 cut(s)	15, 556
AcvI	CACGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	587
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	56, 534
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	3 cut(s)	424, 449, 610
AluI	AGCT	3 cut(s)	424, 449, 610
Alw26I	GTCTC	5 cut(s)	263, 337, 398, 404, 588
AlwI	GGATC	2 cut(s)	614, 627
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	77, 147, 191
ApoI	RAATTY	2 cut(s)	15, 556
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	62, 77
AspS9I	GGNCC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	619
BauI	CACGAG	2 cut(s)	151, 266
BbrPI	CACGTG	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	64, 134, 178
BccI	CCATC	3 cut(s)	361, 532, 536
BciT130I	CCWGG	1 cut(s)	624
BcoDI	GTCTC	5 cut(s)	263, 337, 398, 404, 588
BfmI	CTRYAG	2 cut(s)	444, 589
BfoI	RGCGCY	2 cut(s)	63, 78
BisI	GCNGC	3 cut(s)	78, 148, 192
BlsI	GCNGC	3 cut(s)	79, 149, 193
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	67, 514, 621
BmrFI	CCNGG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	314
BsaI	GGTCTC	3 cut(s)	263, 337, 404
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	2 cut(s)	272, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 534
Bse118I	RCCGGY	2 cut(s)	137, 490
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	2 cut(s)	56, 534
BseMII	CTCAG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	64, 134, 178
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	138, 273, 375, 491
BslI	CCNNNNNNNGG	2 cut(s)	56, 534
BsmAI	GTCTC	5 cut(s)	263, 337, 398, 404, 588
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	3 cut(s)	263, 337, 404
Bsp143I	GATC	1 cut(s)	619
BspACI	CCGC	2 cut(s)	172, 566
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	67, 514, 621
BspPI	GGATC	2 cut(s)	614, 627
BspTNI	GGTCTC	3 cut(s)	263, 337, 404
BsrFI	RCCGGY	2 cut(s)	137, 490
BssAI	RCCGGY	2 cut(s)	137, 490
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	1 cut(s)	619
BssSI	CACGAG	2 cut(s)	151, 266
BssT1I	CCWWGG	1 cut(s)	502
Bst2BI	CACGAG	2 cut(s)	151, 266
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	445, 551
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	244, 416
BstDEI	CTNAG	3 cut(s)	22, 420, 635
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	543
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	2 cut(s)	63, 78
BstHHI	GCGC	2 cut(s)	62, 77
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	5 cut(s)	263, 337, 398, 404, 588
BstMBI	GATC	1 cut(s)	619
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	2 cut(s)	444, 589
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	64, 134, 178
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	244, 416
CfoI	GCGC	2 cut(s)	62, 77
Cfr10I	RCCGGY	2 cut(s)	137, 490
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	247, 257, 348
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	3 cut(s)	22, 420, 635
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	3 cut(s)	263, 337, 404
Eco47I	GGWCC	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	250, 260, 351
FaiI	YATR	8 cut(s)	56, 248, 258, 290, 349, 521, 591, 630
FatI	CATG	3 cut(s)	246, 256, 347
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	78, 148, 192
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	78, 148, 192
GlaI	GCGC	2 cut(s)	61, 76
GluI	GCNGC	3 cut(s)	78, 148, 192
HaeII	RGCGCY	2 cut(s)	63, 78
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	4 cut(s)	138, 273, 375, 491
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	62, 77
Hin1II	CATG	3 cut(s)	250, 260, 351
Hin6I	GCGC	2 cut(s)	60, 75
HinP1I	GCGC	2 cut(s)	60, 75
HinfI	GANTC	4 cut(s)	83, 162, 176, 391
HpaII	CCGG	4 cut(s)	138, 273, 375, 491
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	266, 401, 454
Hpy8I	GTNNAC	1 cut(s)	605
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	416, 451
HpyCH4III	ACNGT	2 cut(s)	445, 551
HpyCH4IV	ACGT	3 cut(s)	232, 313, 333
HpyCH4V	TGCA	3 cut(s)	150, 215, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	3 cut(s)	22, 420, 635
HpySE526I	ACGT	3 cut(s)	232, 313, 333
Hsp92II	CATG	3 cut(s)	250, 260, 351
HspAI	GCGC	2 cut(s)	60, 75
Kzo9I	GATC	1 cut(s)	619
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	3 cut(s)	64, 134, 178
MaeII	ACGT	3 cut(s)	232, 313, 333
MaeIII	GTNAC	6 cut(s)	100, 223, 259, 309, 368, 545
MalI	GATC	1 cut(s)	621
MboI	GATC	1 cut(s)	619
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	4 cut(s)	15, 199, 237, 556
MlyI	GAGTC	2 cut(s)	170, 400
MnlI	CCTC	1 cut(s)	50
MseI	TTAA	2 cut(s)	117, 477
MspI	CCGG	4 cut(s)	138, 273, 375, 491
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	3 cut(s)	250, 260, 351
NlaIV	GGNNCC	3 cut(s)	67, 514, 621
NmuCI	GTSAC	4 cut(s)	100, 259, 309, 368
NspI	RCATGY	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	83, 162
PflFI	GACNNNGTC	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	79, 149, 193
PleI	GAGTC	2 cut(s)	170, 399
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	2 cut(s)	170, 399
Ppu21I	YACGTR	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	622
PspCI	CACGTG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	67, 514, 621
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	619
PsyI	GACNNNGTC	1 cut(s)	348
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	117, 477
SatI	GCNGC	3 cut(s)	78, 148, 192
Sau3AI	GATC	1 cut(s)	619
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	170, 400
ScrFI	CCNGG	1 cut(s)	624
SfcI	CTRYAG	2 cut(s)	444, 589
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	4 cut(s)	15, 199, 237, 556
SsiI	CCGC	2 cut(s)	172, 566
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	445, 551
TaiI	ACGT	3 cut(s)	235, 316, 336
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	4 cut(s)	15, 199, 237, 556
TfiI	GAWTC	2 cut(s)	83, 162
Tru1I	TTAA	2 cut(s)	117, 477
Tru9I	TTAA	2 cut(s)	117, 477
TseFI	GTSAC	4 cut(s)	100, 259, 309, 368
TseI	GCWGC	3 cut(s)	77, 147, 191
Tsp45I	GTSAC	4 cut(s)	100, 259, 309, 368
TspDTI	ATGAA	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	47
VspI	ATTAAT	1 cut(s)	477
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	15, 556
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 535
XmiI	GTMKAC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.