Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

24174059 .. 24175361

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTTTACAAGTTACAATTAGGACAAAACTCTTCTTCTTCACCATCCTAGGCTTAGCACTTGTAGCCCAAATTGCAACAGCTCAAAACTGCGGGTGTGCAGCAGACCTGTGTTGCAGCGAATTTGGTTACTGCGGCACCGGCGATGCCTACTGCGGCAAGGGTTGTCAAGCAGGACCTTGTACTACCACCACCACTCCTACACCAACTACCGGCGGTAGCTCAGTAGCGGATATCGTCACCACCGACTTCTTCAATGGGATTATTAACCAGGCTGGCTCTGACTGTGCCGGCAAGAGCTTCTACACTAGACAGGCCTTTCTTGATGCCCTCGGCTCTTACACCGATTTCGCTACCACCGGTTCCGCTGATGACAATAAGCGGGAAATTGCAGCTTTCTTTGCTCATGTCACGCATGAGACTGGCCATTTTTGCTACGTAGAAGAGATAGAAAAGGCCACCTACTGCGACACATCCTTCACAAACTACCCATGCAACCCTGCCAAGCAGTACTACGGCCGTGGACCACTCCAACTCACCTGGAACTACAACTACGGAGCCGCCGGAACTGCTATTGGCTTTGACGGCCTAAACTCCCCGGAAACGGTGGCTTCGGACTCCGTGGTGGCGTTCAAGACAGGGTTGTGGTTTTGGATGAACAATGTTCACTCTGTTATAAGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGCCGTTGAATGTGATGGAAAAGCTCCGGACAAAGTTCAAGCTCGTATCAACTATTATAAGGACTATTGTACCCAACTTAATGTTTCTCCTGGTGAAAATCTGTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

276

Amino Acids

29.47

Weight (kDa)

4.89

Isoelectric Point (pI)

23.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	29 - 61	1.9e-07	Chitin recognition protein
Glyco_hydro_19	PF00182	79 - 221	1.7e-39	Chitinase class I
Glyco_hydro_19	PF00182	228 - 275	6.6e-10	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	677, 774
AccB1I	GGYRCC	2 cut(s)	137, 716
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	8 cut(s)	93, 135, 156, 216, 230, 366, 382, 561
AcoI	YGGCCR	2 cut(s)	424, 517
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	3 cut(s)	184, 512, 787
AfiI	CCNNNNNNNGG	2 cut(s)	212, 604
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	256, 634, 725, 755
AjnI	CCWGG	3 cut(s)	270, 539, 805
AluBI	AGCT	6 cut(s)	83, 222, 300, 395, 740, 758
AluI	AGCT	6 cut(s)	83, 222, 300, 395, 740, 758
Alw26I	GTCTC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	702
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	5 cut(s)	315, 424, 456, 517, 586
ApeKI	GCWGC	3 cut(s)	101, 117, 392
ApoI	RAATTY	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	359
AspA2I	CCTAGG	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	176, 524
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	4 cut(s)	34, 232, 529, 821
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	2 cut(s)	176, 524
AvrII	CCTAGG	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	769, 802
BalI	TGGCCA	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	137, 716
BbvI	GCAGC	3 cut(s)	113, 129, 404
BccI	CCATC	3 cut(s)	53, 716, 725
BceAI	ACGGC	4 cut(s)	504, 532, 601, 704
BciT130I	CCWGG	3 cut(s)	272, 541, 807
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	50, 309, 826
BisI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
BlnI	CCTAGG	1 cut(s)	49
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	4 cut(s)	272, 541, 599, 807
Bme18I	GGWCC	2 cut(s)	176, 524
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	176, 524
BmiI	GGNNCC	5 cut(s)	139, 364, 559, 694, 718
BmrFI	CCNGG	4 cut(s)	272, 541, 599, 807
BmsI	GCATC	2 cut(s)	136, 316
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	439
BsaJI	CCNNGG	6 cut(s)	49, 331, 520, 597, 621, 682
BsaWI	WCCGGW	2 cut(s)	359, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 604
Bse118I	RCCGGY	4 cut(s)	140, 212, 290, 359
Bse1I	ACTGG	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	3 cut(s)	272, 541, 807
BseDI	CCNNGG	6 cut(s)	49, 331, 520, 597, 621, 682
BseGI	GGATG	3 cut(s)	45, 473, 660
BseLI	CCNNNNNNNGG	2 cut(s)	212, 604
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	427
BseX3I	CGGCCG	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	113, 129, 404
BsgI	GTGCAG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	5 cut(s)	317, 426, 458, 519, 588
BshNI	GGYRCC	2 cut(s)	137, 716
BshTI	ACCGGT	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	7 cut(s)	141, 213, 291, 360, 564, 599, 743
BslI	CCNNNNNNNGG	2 cut(s)	212, 604
BsmAI	GTCTC	1 cut(s)	413
BsnI	GGCC	5 cut(s)	317, 426, 458, 519, 588
BsoBI	CYCGRG	1 cut(s)	702
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	8 cut(s)	93, 135, 156, 216, 230, 366, 382, 561
BspANI	GGCC	5 cut(s)	317, 426, 458, 519, 588
BspCNI	CTCAG	1 cut(s)	236
BspEI	TCCGGA	1 cut(s)	742
BspLI	GGNNCC	5 cut(s)	139, 364, 559, 694, 718
BspT107I	GGYRCC	2 cut(s)	137, 716
BsrFI	RCCGGY	4 cut(s)	140, 212, 290, 359
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	4 cut(s)	140, 212, 290, 359
BssECI	CCNNGG	6 cut(s)	49, 331, 520, 597, 621, 682
BssT1I	CCWWGG	2 cut(s)	49, 682
Bst2UI	CCWGG	3 cut(s)	272, 541, 807
Bst4CI	ACNGT	3 cut(s)	287, 607, 716
Bst6I	CTCTTC	2 cut(s)	38, 438
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	277, 292
BstDEI	CTNAG	2 cut(s)	55, 223
BstDSI	CCRYGG	2 cut(s)	520, 621
BstF5I	GGATG	3 cut(s)	45, 473, 660
BstMAI	GTCTC	1 cut(s)	413
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 141, 401, 432, 569, 585
BstNI	CCWGG	3 cut(s)	272, 541, 807
BstSCI	CCNGG	4 cut(s)	270, 539, 597, 805
BstSNI	TACGTA	1 cut(s)	439
BstV1I	GCAGC	3 cut(s)	113, 129, 404
BstZI	CGGCCG	1 cut(s)	517
BsuRI	GGCC	5 cut(s)	317, 426, 458, 519, 588
BtgI	CCRYGG	2 cut(s)	520, 621
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	45, 473, 660
Cac8I	GCNNGC	2 cut(s)	277, 292
Cfr10I	RCCGGY	4 cut(s)	140, 212, 290, 359
Cfr13I	GGNCC	2 cut(s)	176, 524
Csp6I	GTAC	3 cut(s)	183, 511, 786
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	3 cut(s)	407, 416, 492
CviQI	GTAC	3 cut(s)	183, 511, 786
DdeI	CTNAG	2 cut(s)	55, 223
EaeI	YGGCCR	2 cut(s)	424, 517
EagI	CGGCCG	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	38, 438
EarI	CTCTTC	2 cut(s)	38, 438
EclXI	CGGCCG	1 cut(s)	517
Eco105I	TACGTA	1 cut(s)	439
Eco130I	CCWWGG	2 cut(s)	49, 682
Eco147I	AGGCCT	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	176, 524
Eco52I	CGGCCG	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	270, 539, 805
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	49, 682
ErhI	CCWWGG	2 cut(s)	49, 682
FaeI	CATG	3 cut(s)	410, 419, 495
FaiI	YATR	5 cut(s)	408, 417, 493, 677, 774
FatI	CATG	3 cut(s)	406, 415, 491
FauI	CCCGC	2 cut(s)	86, 375
Fnu4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FokI	GGATG	3 cut(s)	32, 460, 667
Fsp4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FspBI	CTAG	3 cut(s)	50, 309, 826
GluI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
HaeIII	GGCC	5 cut(s)	317, 426, 458, 519, 588
HapII	CCGG	7 cut(s)	141, 213, 291, 360, 564, 599, 743
Hin1II	CATG	3 cut(s)	410, 419, 495
HinfI	GANTC	2 cut(s)	617, 687
HpaII	CCGG	7 cut(s)	141, 213, 291, 360, 564, 599, 743
HphI	GGTGA	4 cut(s)	34, 232, 529, 821
Hpy166II	GTNNAC	2 cut(s)	524, 667
Hpy188I	TCNGA	3 cut(s)	283, 616, 692
Hpy188III	TCNNGA	3 cut(s)	323, 634, 743
Hpy8I	GTNNAC	2 cut(s)	524, 667
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	287, 607, 716
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	5 cut(s)	77, 101, 117, 392, 495
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 141, 401, 432, 569, 585
HpyF3I	CTNAG	2 cut(s)	55, 223
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	410, 419, 495
Kpn2I	TCCGGA	1 cut(s)	742
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
LmnI	GCTCC	3 cut(s)	557, 692, 745
Lsp1109I	GCAGC	3 cut(s)	113, 129, 404
LweI	GCATC	2 cut(s)	136, 316
MaeI	CTAG	3 cut(s)	50, 309, 826
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	4 cut(s)	13, 128, 238, 409
MboII	GAAGA	5 cut(s)	25, 28, 31, 244, 455
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	4 cut(s)	18, 72, 122, 387
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	1 cut(s)	341
Mox20I	TGGCCA	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	742
MroNI	GCCGGC	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	2 cut(s)	267, 795
Msp20I	TGGCCA	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	7 cut(s)	141, 213, 291, 360, 564, 599, 743
MspR9I	CCNGG	4 cut(s)	272, 541, 599, 807
MvaI	CCWGG	3 cut(s)	272, 541, 807
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 141, 401, 432, 569, 585
NaeI	GCCGGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	599
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	410, 419, 495
NlaIV	GGNNCC	5 cut(s)	139, 364, 559, 694, 718
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	238, 409
PaeR7I	CTCGAG	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	687
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Ppu21I	YACGTR	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	176
PsiI	TTATAA	2 cut(s)	677, 774
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	3 cut(s)	270, 539, 805
PspGI	CCWGG	3 cut(s)	270, 539, 805
PspN4I	GGNNCC	5 cut(s)	139, 364, 559, 694, 718
PspPI	GGNCC	2 cut(s)	176, 524
PspPPI	RGGWCCY	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	702
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
RsaI	GTAC	3 cut(s)	184, 512, 787
RsaNI	GTAC	3 cut(s)	183, 511, 786
SaqAI	TTAA	2 cut(s)	267, 795
SatI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
Sau96I	GGNCC	2 cut(s)	176, 524
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	4 cut(s)	272, 541, 599, 807
SfaNI	GCATC	2 cut(s)	136, 316
Sfr274I	CTCGAG	1 cut(s)	702
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	176, 524
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SnaBI	TACGTA	1 cut(s)	439
Sse9I	AATT	4 cut(s)	18, 72, 122, 387
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	8 cut(s)	93, 135, 156, 216, 230, 366, 382, 561
SspMI	CTAG	3 cut(s)	50, 309, 826
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	270, 539, 597, 805
StyI	CCWWGG	2 cut(s)	49, 682
TaaI	ACNGT	3 cut(s)	287, 607, 716
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	703
TasI	AATT	4 cut(s)	18, 72, 122, 387
TatI	WGTACW	2 cut(s)	182, 510
TauI	GCSGC	3 cut(s)	138, 159, 563
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	2 cut(s)	267, 795
Tru9I	TTAA	2 cut(s)	267, 795
TseFI	GTSAC	2 cut(s)	238, 409
TseI	GCWGC	3 cut(s)	101, 117, 392
Tsp45I	GTSAC	2 cut(s)	238, 409
TspDTI	ATGAA	1 cut(s)	671
TspGWI	ACGGA	2 cut(s)	570, 610
VpaK11BI	GGWCC	2 cut(s)	176, 524
XapI	RAATTY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	702
XmaJI	CCTAGG	1 cut(s)	49
XspI	CTAG	3 cut(s)	50, 309, 826
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.