Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

10386662 .. 10387704

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACAATTAGGACAAAATCCCTCTTTTTCACCATCCTAGGCCTAGCATTTGTAGCCCAAATTGCAATAGCTCAAAACTGCGGGTGTGCCGCAAACCTGTGTTGCAGCGAATTTGGTTATTGCGGCACCAGCAAGGCCTACTGCGGCAAGGGTTGTCAAGCAGGACCTTGTACTACCACCACTCCTACACCAACTACTAACGGTGACTCGGTGGCGAACATTGTGACCACTAAATTCTTTAATGGGATTATTAACCAGGCTGCCGCTAACTGTGCCGGGAAGAGCTTCTACACCAGACAGGCTTTTCTCAATGCGCTCGGCTCTTACAGCAATTTTGGTACCAGCGGTTCCGCTGAAAAGAATAAGCGGGAGATTGCAGCTTTCTTTGCTCAGGTCACTCATGAGACTGGCCATTTTTGCTACATAGAAGAGATAAATCGCGGTACCTACTGCAAGAGAAGTACAGACTACCCATGCAACCCTCAAAAGAAGTACTATGGGCGAGGACCACTCCAACTCACCTGGAACTACAATTACGGAGCTGCCGGAAAAGCTATTGGCTTCGACGGCTTAAACTCCCCTGAAAAGGTGGCTTCAGACCCTGTGGTGGCGTTCAAGGCGAGCTTATGGTTTTGGATGAACAATGTTCACTCTGTTCTAAGCCAAGGATTTGGAGCCACAACTCGAGCCATCAACAGTGGGGAATGTGGTGGCGGAGCCCCAAATAAAGTTCAAGCTCGCGTCAACTATTACAAGCAGTATTGCACCCAACTTAATGTTTCTCCGGGTGACAATCTCTATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

269

Amino Acids

28.88

Weight (kDa)

8.91

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	26 - 57	2.7e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	74 - 215	3.4e-43	Chitinase class I
Glyco_hydro_19	PF00182	222 - 268	1e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	338, 443
AccB1I	GGYRCC	3 cut(s)	125, 338, 443
AccII	CGCG	2 cut(s)	441, 741
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	2 cut(s)	110, 233
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	5 cut(s)	172, 340, 445, 463, 494
AfiI	CCNNNNNNNGG	2 cut(s)	586, 607
AgsI	TTSAA	2 cut(s)	616, 734
AjnI	CCWGG	2 cut(s)	255, 521
AluBI	AGCT	7 cut(s)	71, 285, 380, 542, 554, 624, 737
AluI	AGCT	7 cut(s)	71, 285, 380, 542, 554, 624, 737
Alw26I	GTCTC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	3 cut(s)	40, 135, 409
ApeKI	GCWGC	4 cut(s)	105, 260, 377, 542
ApoI	RAATTY	2 cut(s)	110, 233
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	2 cut(s)	338, 443
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	164, 506
AsuC2I	CCSGG	2 cut(s)	277, 786
AsuHPI	GGTGA	4 cut(s)	22, 215, 511, 800
AvaI	CYCGRG	1 cut(s)	684
AvaII	GGWCC	2 cut(s)	164, 506
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	3 cut(s)	125, 338, 443
BanII	GRGCYC	1 cut(s)	721
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	4 cut(s)	117, 247, 389, 529
BccI	CCATC	2 cut(s)	41, 698
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	257, 523
BcnI	CCSGG	2 cut(s)	277, 786
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	38, 44
BisI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	8 cut(s)	91, 107, 125, 146, 262, 265, 379, 544
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	4 cut(s)	257, 277, 523, 786
Bme18I	GGWCC	2 cut(s)	164, 506
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	164, 506
BmiI	GGNNCC	6 cut(s)	127, 340, 349, 445, 676, 718
BmrFI	CCNGG	4 cut(s)	257, 277, 523, 786
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	277, 786
BsaJI	CCNNGG	2 cut(s)	37, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 607
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	257, 523
BseDI	CCNNGG	2 cut(s)	37, 664
BseGI	GGATG	2 cut(s)	33, 642
BseLI	CCNNNNNNNGG	2 cut(s)	586, 607
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	4 cut(s)	117, 247, 389, 529
Bsh1236I	CGCG	2 cut(s)	441, 741
BshFI	GGCC	3 cut(s)	42, 137, 411
BshNI	GGYRCC	3 cut(s)	125, 338, 443
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	3 cut(s)	276, 546, 785
BslI	CCNNNNNNNGG	2 cut(s)	586, 607
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	42, 137, 411
BsoBI	CYCGRG	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	721
BspANI	GGCC	3 cut(s)	42, 137, 411
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	441, 741
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	6 cut(s)	127, 340, 349, 445, 676, 718
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	3 cut(s)	125, 338, 443
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	37, 664
BssT1I	CCWWGG	2 cut(s)	37, 664
Bst2UI	CCWGG	2 cut(s)	257, 523
Bst4CI	ACNGT	3 cut(s)	203, 272, 698
Bst6I	CTCTTC	2 cut(s)	275, 423
BstC8I	GCNNGC	2 cut(s)	622, 739
BstDEI	CTNAG	2 cut(s)	390, 659
BstF5I	GGATG	2 cut(s)	33, 642
BstFNI	CGCG	2 cut(s)	441, 741
BstHHI	GCGC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	257, 523
BstSCI	CCNGG	4 cut(s)	255, 275, 521, 784
BstUI	CGCG	2 cut(s)	441, 741
BstV1I	GCAGC	4 cut(s)	117, 247, 389, 529
BstXI	CCANNNNNNTGG	1 cut(s)	671
BsuRI	GGCC	3 cut(s)	42, 137, 411
BtsCI	GGATG	2 cut(s)	33, 642
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	622, 739
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	164, 506
CseI	GACGC	1 cut(s)	730
Csp6I	GTAC	5 cut(s)	171, 339, 444, 462, 493
CviAII	CATG	2 cut(s)	401, 474
CviQI	GTAC	5 cut(s)	171, 339, 444, 462, 493
DdeI	CTNAG	2 cut(s)	390, 659
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	275, 423
EarI	CTCTTC	2 cut(s)	275, 423
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	37, 664
Eco147I	AGGCCT	2 cut(s)	42, 137
Eco24I	GRGCYC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	164, 506
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	255, 521
EcoT14I	CCWWGG	2 cut(s)	37, 664
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	37, 664
FaeI	CATG	2 cut(s)	404, 477
FaiI	YATR	5 cut(s)	402, 425, 475, 498, 628
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FatI	CATG	2 cut(s)	400, 473
FauI	CCCGC	2 cut(s)	74, 360
Fnu4HI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
FokI	GGATG	2 cut(s)	20, 649
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
FspBI	CTAG	2 cut(s)	38, 44
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
HaeIII	GGCC	3 cut(s)	42, 137, 411
HapII	CCGG	3 cut(s)	276, 546, 785
HgaI	GACGC	1 cut(s)	730
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	404, 477
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	3 cut(s)	276, 546, 785
HphI	GGTGA	4 cut(s)	22, 215, 511, 800
Hpy166II	GTNNAC	2 cut(s)	649, 745
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	2 cut(s)	649, 745
Hpy99I	CGWCG	1 cut(s)	569
HpyCH4III	ACNGT	3 cut(s)	203, 272, 698
HpyCH4V	TGCA	6 cut(s)	65, 105, 377, 453, 477, 765
HpyF3I	CTNAG	2 cut(s)	390, 659
Hsp92II	CATG	2 cut(s)	404, 477
HspAI	GCGC	1 cut(s)	314
KpnI	GGTACC	2 cut(s)	342, 447
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	3 cut(s)	539, 674, 716
Lsp1109I	GCAGC	4 cut(s)	117, 247, 389, 529
MaeI	CTAG	2 cut(s)	38, 44
MaeIII	GTNAC	4 cut(s)	203, 223, 394, 788
MboII	GAAGA	2 cut(s)	292, 440
MhlI	GDGCHC	1 cut(s)	721
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
MluNI	TGGCCA	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	3 cut(s)	32, 492, 497
Mox20I	TGGCCA	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	4 cut(s)	240, 252, 572, 774
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	345, 353
MspI	CCGG	3 cut(s)	276, 546, 785
MspR9I	CCNGG	4 cut(s)	257, 277, 523, 786
MvaI	CCWGG	2 cut(s)	257, 523
MvnI	CGCG	2 cut(s)	441, 741
NciI	CCSGG	2 cut(s)	277, 786
NlaIII	CATG	2 cut(s)	404, 477
NlaIV	GGNNCC	6 cut(s)	127, 340, 349, 445, 676, 718
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	4 cut(s)	203, 223, 394, 788
PaeR7I	CTCGAG	1 cut(s)	684
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	2 cut(s)	42, 137
PciSI	GCTCTTC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	91, 107, 125, 146, 262, 265, 379, 544
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	255, 521
PspGI	CCWGG	2 cut(s)	255, 521
PspN4I	GGNNCC	6 cut(s)	127, 340, 349, 445, 676, 718
PspPI	GGNCC	2 cut(s)	164, 506
PspPPI	RGGWCCY	1 cut(s)	164
PspXI	VCTCGAGB	1 cut(s)	684
PsrI	GAACNNNNNNTAC	4 cut(s)	331, 363, 518, 550
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	5 cut(s)	172, 340, 445, 463, 494
RsaNI	GTAC	5 cut(s)	171, 339, 444, 462, 493
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	240, 252, 572, 774
SatI	GCNGC	8 cut(s)	90, 106, 124, 145, 261, 264, 378, 543
Sau96I	GGNCC	2 cut(s)	164, 506
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	4 cut(s)	257, 277, 523, 786
SduI	GDGCHC	1 cut(s)	721
Sfr274I	CTCGAG	1 cut(s)	684
SinI	GGWCC	2 cut(s)	164, 506
SlaI	CTCGAG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
SseBI	AGGCCT	2 cut(s)	42, 137
SspMI	CTAG	2 cut(s)	38, 44
StuI	AGGCCT	2 cut(s)	42, 137
StyD4I	CCNGG	4 cut(s)	255, 275, 521, 784
StyI	CCWWGG	2 cut(s)	37, 664
TaaI	ACNGT	3 cut(s)	203, 272, 698
TaqI	TCGA	2 cut(s)	564, 685
TasI	AATT	6 cut(s)	6, 60, 110, 233, 331, 532
TatI	WGTACW	3 cut(s)	170, 461, 492
TauI	GCSGC	4 cut(s)	92, 126, 147, 266
Tru1I	TTAA	4 cut(s)	240, 252, 572, 774
Tru9I	TTAA	4 cut(s)	240, 252, 572, 774
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	4 cut(s)	203, 223, 394, 788
TseI	GCWGC	4 cut(s)	105, 260, 377, 542
Tsp45I	GTSAC	4 cut(s)	203, 223, 394, 788
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	164, 506
XapI	RAATTY	2 cut(s)	110, 233
XhoI	CTCGAG	1 cut(s)	684
XmaJI	CCTAGG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	38, 44
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.