Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

14333813 .. 14335110

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGCCAGGCTGGCTCTGACTGTGCCGGCAAGAGCTTCTACACTAGACAGGCCTTTCTTGATGCCCTCGGCTCTTACACCGATTTCGCTACCACCGGTTCCGCTGATGACAATAAGCGGGAAATTGCAGCTTTCTTTGCTCATGTCACTCATGAGACTGGCCATTTTTGCTACGTAGAAGAGATAGAAAAGGCCACCTACTGCGACACATCCTTCACAAACTACCCATGCAACCCTGCCAAGCAGTACTACGGCCGTGGACCACTCCAACTCACCTGGAACTACAACTACGGAGCCGCCGGAAATGCTATTGGCTTTGACGGCCTAAACTCTCCGGAAACGGTGGCTTCGGACTCCGTGGTGGCGTTCAAGACAGGGTTGTGGTTTTGGATGAACAATGTTCACTCTGTTATAAGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTGCCGTTGAATGTGATGGCAAAGCTCCGGACAAAGTTCAAGCTCGTATCAACTATTATAAGGACTACTGTACCCAACTTAATGTTTCTCCTGGCGAAAATCTGTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

5.08

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	6 - 133	3.2e-38	Chitinase class I
Glyco_hydro_19	PF00182	140 - 187	3.7e-10	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	413, 510
AccB1I	GGYRCC	1 cut(s)	452
AccIII	TCCGGA	2 cut(s)	334, 478
AciI	CCGC	3 cut(s)	102, 118, 297
AcoI	YGGCCR	2 cut(s)	160, 253
AfaI	GTAC	2 cut(s)	248, 523
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	370, 461, 491
AjnI	CCWGG	3 cut(s)	6, 275, 541
AluBI	AGCT	4 cut(s)	36, 131, 476, 494
AluI	AGCT	4 cut(s)	36, 131, 476, 494
Alw26I	GTCTC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	438
Aor13HI	TCCGGA	2 cut(s)	334, 478
AoxI	GGCC	6 cut(s)	4, 51, 160, 192, 253, 322
ApeKI	GCWGC	1 cut(s)	128
AsiGI	ACCGGT	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	4, 260
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	260
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	452, 461
BceAI	ACGGC	4 cut(s)	240, 268, 337, 440
BciT130I	CCWGG	3 cut(s)	8, 277, 543
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	45, 562
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	129, 297
BlsI	GCNGC	2 cut(s)	130, 298
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	8, 277, 543
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	4, 260
BmiI	GGNNCC	4 cut(s)	100, 295, 430, 454
BmrFI	CCNGG	3 cut(s)	8, 277, 543
BmsI	GCATC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	67, 256, 357, 418
BsaWI	WCCGGW	3 cut(s)	95, 334, 478
Bse118I	RCCGGY	2 cut(s)	26, 95
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	334, 478
BseBI	CCWGG	3 cut(s)	8, 277, 543
BseDI	CCNNGG	4 cut(s)	67, 256, 357, 418
BseGI	GGATG	2 cut(s)	209, 396
BseNI	ACTGG	1 cut(s)	163
BseX3I	CGGCCG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	6 cut(s)	6, 53, 162, 194, 255, 324
BshNI	GGYRCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	5 cut(s)	27, 96, 300, 335, 479
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	6 cut(s)	6, 53, 162, 194, 255, 324
BsoBI	CYCGRG	1 cut(s)	438
Bsp13I	TCCGGA	2 cut(s)	334, 478
BspACI	CCGC	3 cut(s)	102, 118, 297
BspANI	GGCC	6 cut(s)	6, 53, 162, 194, 255, 324
BspEI	TCCGGA	2 cut(s)	334, 478
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	4 cut(s)	100, 295, 430, 454
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	26, 95
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	2 cut(s)	26, 95
BssECI	CCNNGG	4 cut(s)	67, 256, 357, 418
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	3 cut(s)	8, 277, 543
Bst4CI	ACNGT	4 cut(s)	23, 343, 452, 521
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	13, 28
BstDSI	CCRYGG	2 cut(s)	256, 357
BstF5I	GGATG	2 cut(s)	209, 396
BstMAI	GTCTC	1 cut(s)	149
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 137, 168, 305, 321
BstNI	CCWGG	3 cut(s)	8, 277, 543
BstSCI	CCNGG	3 cut(s)	6, 275, 541
BstSNI	TACGTA	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	140
BstZI	CGGCCG	1 cut(s)	253
BsuRI	GGCC	6 cut(s)	6, 53, 162, 194, 255, 324
BtgI	CCRYGG	2 cut(s)	256, 357
BtsCI	GGATG	2 cut(s)	209, 396
Cac8I	GCNNGC	2 cut(s)	13, 28
CciI	TCATGA	1 cut(s)	151
Cfr10I	RCCGGY	2 cut(s)	26, 95
Cfr13I	GGNCC	2 cut(s)	4, 260
Csp6I	GTAC	2 cut(s)	247, 522
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	143, 152, 228
CviQI	GTAC	2 cut(s)	247, 522
EaeI	YGGCCR	2 cut(s)	160, 253
EagI	CGGCCG	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	253
Eco105I	TACGTA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	418
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	438
EcoRII	CCWGG	3 cut(s)	6, 275, 541
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	146, 155, 231
FaiI	YATR	5 cut(s)	144, 153, 229, 413, 510
FatI	CATG	3 cut(s)	142, 151, 227
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	129, 297
FokI	GGATG	2 cut(s)	196, 403
Fsp4HI	GCNGC	2 cut(s)	129, 297
FspBI	CTAG	2 cut(s)	45, 562
GluI	GCNGC	2 cut(s)	129, 297
HaeIII	GGCC	6 cut(s)	6, 53, 162, 194, 255, 324
HapII	CCGG	5 cut(s)	27, 96, 300, 335, 479
Hin1II	CATG	3 cut(s)	146, 155, 231
HinfI	GANTC	2 cut(s)	353, 423
HpaII	CCGG	5 cut(s)	27, 96, 300, 335, 479
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	260, 403
Hpy188I	TCNGA	3 cut(s)	19, 352, 428
Hpy188III	TCNNGA	5 cut(s)	59, 152, 335, 370, 479
Hpy8I	GTNNAC	2 cut(s)	260, 403
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	4 cut(s)	23, 343, 452, 521
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	128, 231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 137, 168, 305, 321
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	146, 155, 231
Kpn2I	TCCGGA	2 cut(s)	334, 478
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
LmnI	GCTCC	3 cut(s)	293, 428, 481
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	45, 562
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	162
MroI	TCCGGA	2 cut(s)	334, 478
MroNI	GCCGGC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	5 cut(s)	27, 96, 300, 335, 479
MspR9I	CCNGG	3 cut(s)	8, 277, 543
MvaI	CCWGG	3 cut(s)	8, 277, 543
MwoI	GCNNNNNNNGC	5 cut(s)	12, 137, 168, 305, 321
NaeI	GCCGGC	1 cut(s)	28
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	146, 155, 231
NlaIV	GGNNCC	4 cut(s)	100, 295, 430, 454
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	438
PagI	TCATGA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	423
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	130, 298
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	175
PsiI	TTATAA	2 cut(s)	413, 510
Psp6I	CCWGG	3 cut(s)	6, 275, 541
PspGI	CCWGG	3 cut(s)	6, 275, 541
PspN4I	GGNNCC	4 cut(s)	100, 295, 430, 454
PspPI	GGNCC	2 cut(s)	4, 260
PspXI	VCTCGAGB	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
RsaI	GTAC	2 cut(s)	248, 523
RsaNI	GTAC	2 cut(s)	247, 522
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	2 cut(s)	129, 297
Sau96I	GGNCC	2 cut(s)	4, 260
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	8, 277, 543
SetI	ASST	7 cut(s)	38, 133, 177, 200, 278, 478, 496
SfaNI	GCATC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SnaBI	TACGTA	1 cut(s)	175
Sse9I	AATT	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	102, 118, 297
SspMI	CTAG	2 cut(s)	45, 562
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	6, 275, 541
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	4 cut(s)	23, 343, 452, 521
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	439
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	2 cut(s)	306, 346
VpaK11BI	GGWCC	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	438
XspI	CTAG	2 cut(s)	45, 562
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.