Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Forward (+)

5872790 .. 5873326

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G080300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTTTCTACAATACAATAAAACACCTTGTAAGCCTCATTGCCCTATTCTATGTAGCTGAAGCAGTGCTAAAAAATTTGACAGCACAAAGTTGTGGCTGTGCCCCAGAGATATGTTGTAGCCAGTATGGCGACTGCGGCAGCGGAGATGGTTACTGGGGCCAGGGTTATAAAGAAGGCCCTTGTACTAGCAGCGGTGGCAGCACAACTACCACACCAAGGAGCAATGGTAGTGGTGGTTCGTCGGTGGCTGATATTGTAACCCCAGAATTCTTCAACAGGATCATTAACCAAGTGTTTAGGCCTAGTTTTTACGAATCCAAAATTAAAGCTAATTGGTCCAAGTACATGATTTGGGCTTTAATTGTACAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

126

Amino Acids

13.56

Weight (kDa)

7.55

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AciI	CCGC	3 cut(s)	138, 144, 195
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	76, 269
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	3 cut(s)	187, 347, 369
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	59, 332
AluI	AGCT	2 cut(s)	59, 332
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	3 cut(s)	160, 178, 302
ApeKI	GCWGC	3 cut(s)	141, 192, 201
ApoI	RAATTY	2 cut(s)	76, 269
AspS9I	GGNCC	3 cut(s)	160, 179, 339
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	153, 204, 213
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	2 cut(s)	189, 306
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	4 cut(s)	139, 142, 193, 202
BlsI	GCNGC	4 cut(s)	140, 143, 194, 203
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	3 cut(s)	160, 179, 339
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	163, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	124, 161
Bse3DI	GCAATG	2 cut(s)	39, 232
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	163, 218
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	39, 232
BseNI	ACTGG	2 cut(s)	124, 161
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	153, 204, 213
BshFI	GGCC	3 cut(s)	162, 180, 304
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	3 cut(s)	162, 180, 304
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	138, 144, 195
BspANI	GGCC	3 cut(s)	162, 180, 304
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	39, 232
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	124, 161
BssECI	CCNNGG	2 cut(s)	163, 218
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	367
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 138, 198, 201
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	153, 204, 213
BsuRI	GGCC	3 cut(s)	162, 180, 304
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	160, 179, 339
Csp6I	GTAC	3 cut(s)	186, 346, 368
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	3 cut(s)	186, 346, 368
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	352
FaiI	YATR	6 cut(s)	54, 115, 129, 171, 350, 376
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	139, 142, 193, 202
Fsp4HI	GCNGC	4 cut(s)	139, 142, 193, 202
FspBI	CTAG	2 cut(s)	189, 306
GluI	GCNGC	4 cut(s)	139, 142, 193, 202
HaeIII	GGCC	3 cut(s)	162, 180, 304
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 138, 198, 201
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	7 cut(s)	120, 137, 142, 149, 176, 265, 279
Lsp1109I	GCAGC	3 cut(s)	153, 204, 213
MaeI	CTAG	2 cut(s)	189, 306
MaeIII	GTNAC	2 cut(s)	152, 259
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	5 cut(s)	76, 269, 324, 334, 363
MnlI	CCTC	1 cut(s)	47
MseI	TTAA	3 cut(s)	288, 327, 362
MspA1I	CMGCKG	2 cut(s)	144, 195
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	129, 138, 198, 201
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	140, 143, 194, 203
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	3 cut(s)	160, 179, 339
PsrI	GAACNNNNNNTAC	2 cut(s)	223, 255
RsaI	GTAC	3 cut(s)	187, 347, 369
RsaNI	GTAC	3 cut(s)	186, 346, 368
SaqAI	TTAA	3 cut(s)	288, 327, 362
SatI	GCNGC	4 cut(s)	139, 142, 193, 202
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	3 cut(s)	160, 179, 339
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	3 cut(s)	30, 61, 334
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	5 cut(s)	76, 269, 324, 334, 363
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	3 cut(s)	138, 144, 195
SspMI	CTAG	2 cut(s)	189, 306
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	218
TasI	AATT	5 cut(s)	76, 269, 324, 334, 363
TatI	WGTACW	3 cut(s)	185, 345, 367
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	288, 327, 362
Tru9I	TTAA	3 cut(s)	288, 327, 362
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	3 cut(s)	141, 192, 201
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	2 cut(s)	76, 269
XspI	CTAG	2 cut(s)	189, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.