Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTTTCCAAGTTACAATTAGGACGAAGTCCCTTTTCTTCACCATCCTAGGTTTAGCATTTGTAGCACAAATTGCAATAGCTCAAGACTGCGGGTGTGCCGCAGGCCTGTGTTGCAGCGAATTTGGTTACTGCGGCACCGGTGATGCCTACTGCGGCAACGGTTGTAAAGAAGGTCCTTGTACTACCACCCCCACACCGACACCAACTACTAACGGTGGCTCGGTGGCAGATATCGTAACCACTGACTTCTTCAACGGGATTATTAATCAGGCTGGTGCTGACTGTGCCGGAAAGAGCTTCTACACCAGACAGGCTTTTCTCGATGCCCTCGGCTCTTATGGTGATTTCGGTACCACCGGTTCCGCTGATGACAATAAGCGGGAAGTTGCAGCGCTGTTTGCTCATGTCACGCATGAGACGGGCCATTTTTGCTACATTGAAGAGATAAATAAGAGCACCTACTGCGACACGACCAGAACAGACTACCCATGCAACCCCGACAAGCAGTACTACGGGCGTGGACCACTCCAGCTCACCTGGAACTACAATTACGGAGCTGCCGGAAATGCCATTGGCTTTGACGGCTTGAACTCCCCCGAAACGGTGGCTCAAGACCCGGTGATAGCATTCAAGACAGCCTTGTGGTATTGGATGACCAATGTTCACTCCGTTATAGGCCAAGGATTCGGAGCCACTACTCGAGCCATCAACGGTGCTGTGGAATGTGATGGCAAATCCCCAGCCACTGTTCAAGCTCGCGCCAACTATTACACTGACTACTGCACCCAATTTAATGTTGCTCCCGGTGACAATCTCTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

275

Amino Acids

29.36

Weight (kDa)

4.69

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	32 - 61	3.1e-07	Chitin recognition protein
Glyco_hydro_19	PF00182	79 - 222	4.3e-40	Chitinase class I
Glyco_hydro_19	PF00182	229 - 275	2.6e-07	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	137, 353
AccII	CGCG	1 cut(s)	762
AciI	CCGC	6 cut(s)	93, 102, 135, 156, 366, 382
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	3 cut(s)	184, 355, 512
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgeI	ACCGGT	2 cut(s)	140, 359
AgsI	TTSAA	5 cut(s)	256, 443, 592, 634, 755
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	5 cut(s)	83, 300, 535, 560, 758
AluI	AGCT	5 cut(s)	83, 300, 535, 560, 758
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	702
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	3 cut(s)	106, 424, 679
ApeKI	GCWGC	3 cut(s)	117, 392, 560
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	267
AsiGI	ACCGGT	2 cut(s)	140, 359
Asp718I	GGTACC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	49
AspLEI	GCGC	2 cut(s)	397, 764
AspS9I	GGNCC	3 cut(s)	176, 424, 524
AsuC2I	CCSGG	2 cut(s)	620, 807
AsuHPI	GGTGA	6 cut(s)	34, 155, 356, 529, 634, 821
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	2 cut(s)	176, 524
AvrII	CCTAGG	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	137, 353
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	129, 404, 547
BccI	CCATC	3 cut(s)	53, 716, 725
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	541
BcnI	CCSGG	2 cut(s)	620, 807
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	50, 826
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	3 cut(s)	541, 620, 807
Bme18I	GGWCC	2 cut(s)	176, 524
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	3 cut(s)	176, 424, 524
BmiI	GGNNCC	4 cut(s)	139, 355, 364, 694
BmrFI	CCNGG	3 cut(s)	541, 620, 807
BmsI	GCATC	2 cut(s)	136, 316
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	69, 597
BpuMI	CCSGG	2 cut(s)	620, 807
BsaJI	CCNNGG	3 cut(s)	49, 331, 682
BsaWI	WCCGGW	2 cut(s)	140, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	2 cut(s)	140, 359
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	49, 331, 682
BseGI	GGATG	2 cut(s)	45, 660
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	129, 404, 547
BseYI	CCCAGC	1 cut(s)	742
BsgI	GTGCAG	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	108, 426, 681
BshNI	GGYRCC	2 cut(s)	137, 353
BshTI	ACCGGT	2 cut(s)	140, 359
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	6 cut(s)	141, 291, 360, 564, 620, 807
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	3 cut(s)	108, 426, 681
BsoBI	CYCGRG	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	461
BspACI	CCGC	6 cut(s)	93, 102, 135, 156, 366, 382
BspANI	GGCC	3 cut(s)	108, 426, 681
BspFNI	CGCG	1 cut(s)	762
BspLI	GGNNCC	4 cut(s)	139, 355, 364, 694
BspT107I	GGYRCC	2 cut(s)	137, 353
BsrFI	RCCGGY	2 cut(s)	140, 359
BssAI	RCCGGY	2 cut(s)	140, 359
BssECI	CCNNGG	3 cut(s)	49, 331, 682
BssT1I	CCWWGG	2 cut(s)	49, 682
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	6 cut(s)	164, 218, 287, 607, 716, 751
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	2 cut(s)	74, 465
BstC8I	GCNNGC	2 cut(s)	106, 760
BstF5I	GGATG	2 cut(s)	45, 660
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	2 cut(s)	397, 764
BstMAI	GTCTC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 74, 114, 287, 401, 432, 465, 569, 585
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	3 cut(s)	539, 618, 805
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	3 cut(s)	129, 404, 547
BsuRI	GGCC	3 cut(s)	108, 426, 681
BtsCI	GGATG	2 cut(s)	45, 660
BtsIMutI	CAGTG	3 cut(s)	243, 747, 774
Cac8I	GCNNGC	2 cut(s)	106, 760
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	2 cut(s)	397, 764
Cfr10I	RCCGGY	2 cut(s)	140, 359
Cfr13I	GGNCC	3 cut(s)	176, 424, 524
Csp6I	GTAC	3 cut(s)	183, 354, 511
CspAI	ACCGGT	2 cut(s)	140, 359
CviAII	CATG	3 cut(s)	407, 416, 492
CviQI	GTAC	3 cut(s)	183, 354, 511
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	49, 682
Eco147I	AGGCCT	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	176, 524
Eco47III	AGCGCT	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	49, 682
ErhI	CCWWGG	2 cut(s)	49, 682
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	3 cut(s)	410, 419, 495
FaiI	YATR	5 cut(s)	342, 408, 417, 493, 677
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	406, 415, 491
FauI	CCCGC	2 cut(s)	86, 375
Fnu4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FokI	GGATG	2 cut(s)	32, 667
Fsp4HI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
FspBI	CTAG	2 cut(s)	50, 826
GlaI	GCGC	2 cut(s)	396, 763
GluI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
GsaI	CCCAGC	1 cut(s)	746
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	108, 426, 681
HapII	CCGG	6 cut(s)	141, 291, 360, 564, 620, 807
HhaI	GCGC	2 cut(s)	397, 764
Hin1II	CATG	3 cut(s)	410, 419, 495
Hin6I	GCGC	2 cut(s)	395, 762
HinP1I	GCGC	2 cut(s)	395, 762
HinfI	GANTC	1 cut(s)	687
HpaII	CCGG	6 cut(s)	141, 291, 360, 564, 620, 807
HphI	GGTGA	6 cut(s)	34, 155, 356, 529, 634, 821
Hpy166II	GTNNAC	2 cut(s)	524, 667
Hpy188I	TCNGA	1 cut(s)	692
Hpy188III	TCNNGA	4 cut(s)	86, 323, 614, 634
Hpy8I	GTNNAC	2 cut(s)	524, 667
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	6 cut(s)	164, 218, 287, 607, 716, 751
HpyCH4V	TGCA	5 cut(s)	77, 117, 392, 495, 786
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 74, 114, 287, 401, 432, 465, 569, 585
Hsp92II	CATG	3 cut(s)	410, 419, 495
HspAI	GCGC	2 cut(s)	395, 762
KpnI	GGTACC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	557, 692, 808
Lsp1109I	GCAGC	3 cut(s)	129, 404, 547
LweI	GCATC	2 cut(s)	136, 316
MaeI	CTAG	2 cut(s)	50, 826
MaeIII	GTNAC	5 cut(s)	13, 128, 238, 409, 809
MboII	GAAGA	3 cut(s)	31, 244, 455
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	5 cut(s)	18, 72, 122, 550, 791
MnlI	CCTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	267, 795
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	6 cut(s)	141, 291, 360, 564, 620, 807
MspR9I	CCNGG	3 cut(s)	541, 620, 807
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	9 cut(s)	65, 74, 114, 287, 401, 432, 465, 569, 585
NciI	CCSGG	2 cut(s)	620, 807
NlaIII	CATG	3 cut(s)	410, 419, 495
NlaIV	GGNNCC	4 cut(s)	139, 355, 364, 694
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	409, 809
PaeR7I	CTCGAG	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	108
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	687
PflFI	GACNNNGTC	1 cut(s)	28
PinAI	ACCGGT	2 cut(s)	140, 359
PkrI	GCNGC	6 cut(s)	103, 119, 137, 158, 394, 562
PpuMI	RGGWCCY	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	139, 355, 364, 694
PspPI	GGNCC	3 cut(s)	176, 424, 524
PspPPI	RGGWCCY	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	702
PsrI	GAACNNNNNNTAC	4 cut(s)	346, 378, 536, 568
PstNI	CAGNNNCTG	1 cut(s)	749
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	3 cut(s)	184, 355, 512
RsaNI	GTAC	3 cut(s)	183, 354, 511
SaqAI	TTAA	2 cut(s)	267, 795
SatI	GCNGC	6 cut(s)	102, 118, 136, 157, 393, 561
Sau96I	GGNCC	3 cut(s)	176, 424, 524
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	541, 620, 807
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	9 cut(s)	55, 85, 178, 302, 464, 537, 542, 562, 760
SfaNI	GCATC	2 cut(s)	136, 316
Sfr274I	CTCGAG	1 cut(s)	702
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	176, 524
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	84, 612, 702
SmoI	CTYRAG	3 cut(s)	84, 612, 702
Sse9I	AATT	5 cut(s)	18, 72, 122, 550, 791
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	6 cut(s)	93, 102, 135, 156, 366, 382
SspMI	CTAG	2 cut(s)	50, 826
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	3 cut(s)	539, 618, 805
StyI	CCWWGG	2 cut(s)	49, 682
TaaI	ACNGT	6 cut(s)	164, 218, 287, 607, 716, 751
TaqI	TCGA	2 cut(s)	324, 703
TasI	AATT	5 cut(s)	18, 72, 122, 550, 791
TatI	WGTACW	2 cut(s)	182, 510
TauI	GCSGC	3 cut(s)	104, 138, 159
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	2 cut(s)	267, 795
Tru9I	TTAA	2 cut(s)	267, 795
TscAI	CASTG	3 cut(s)	250, 754, 781
TseFI	GTSAC	2 cut(s)	409, 809
TseI	GCWGC	3 cut(s)	117, 392, 560
Tsp45I	GTSAC	2 cut(s)	409, 809
TspGWI	ACGGA	2 cut(s)	570, 661
TspRI	CASTG	3 cut(s)	250, 754, 781
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	176, 524
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	702
XmaJI	CCTAGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	50, 826
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.