Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

22447202 .. 22448491

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTTCCAAGTTGCAGTCTTCACCATCCTAGGGCTAGCATTTGTAGCCCAAATTGCTGTTGCTCAAAGCGTGGCAGATATCGTTACAGTGGACTTCTTCAACGGGATTATTAACCAAGCTGCCGCTGATTGTGCCGGCAAGAGCTTCTACACCAGACAGGCTTTTCTCGATGCCGTAGGCTCTTACCCCAGTTTCGGTACCTCCGGTTCCGCTGATGAGAATAAACGGGAAATTGCAGCTTTCTTTGCTCACGTCACTCATGAGACTGGCCATTTTTGCTACATTGAAGAGATAAATAAGGCAACCTACTGCGACACGACCAGAACTGCAGAATACCCATGCACCCCCGACAAGCAGTACTACGGGCGTGGACCACTCCAGCTCACCTGGAACTACAATTACGGAGCTGCCGGAAATGCCATTGGCTTTGATGGCTTGAACTCCCCCGAAACGGTGGCCCAAGACCCCGTGATAGCGTTCAAGACAAGCTTGTGGTATTGGATGACCAATGTTCACTCCGTTATAGGCCAAGGATTCGGAGCCACAACTCGAGCCATCAACGGTCCTGTGGAATGTGATGGCAAAATGCCGGACAAAGTTCAAGCTCGCGCCAACTATTACACTAACTACTGCACCCAATTTAATGTTGCTCCCGGTGACAATCTCTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009635 GO:0009636 GO:0009814 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010243 GO:0010272 GO:0014070 GO:0016787 GO:0016798 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0043207 GO:0044464 GO:0045087 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0072722 GO:0090693 GO:0098542 GO:0099402 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

225

Amino Acids

24.51

Weight (kDa)

4.94

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	28 - 172	2.2e-41	Chitinase class I
Glyco_hydro_19	PF00182	179 - 225	1.9e-07	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	612
AciI	CCGC	2 cut(s)	126, 213
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	202, 362
AfiI	CCNNNNNNNGG	3 cut(s)	33, 197, 454
AgsI	TTSAA	5 cut(s)	103, 290, 442, 484, 605
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	7 cut(s)	122, 147, 242, 385, 410, 492, 608
AluI	AGCT	7 cut(s)	122, 147, 242, 385, 410, 492, 608
Alw26I	GTCTC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	3 cut(s)	271, 459, 529
ApeKI	GCWGC	3 cut(s)	122, 239, 410
Asp718I	GGTACC	1 cut(s)	200
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	3 cut(s)	374, 460, 566
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	16, 379, 671
AsuNHI	GCTAGC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	2 cut(s)	374, 566
AvrII	CCTAGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	109, 251, 397
BccI	CCATC	4 cut(s)	35, 428, 566, 575
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	3 cut(s)	32, 38, 676
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	123, 126, 240, 411
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	4 cut(s)	124, 127, 241, 412
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	391, 657
Bme18I	GGWCC	2 cut(s)	374, 566
BmeT110I	CYCGRG	1 cut(s)	552
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	374, 460, 566
BmiI	GGNNCC	3 cut(s)	202, 211, 544
BmrFI	CCNGG	2 cut(s)	391, 657
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	31, 532
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 197, 454
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	192, 274
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	31, 532
BseGI	GGATG	2 cut(s)	27, 510
BseLI	CCNNNNNNNGG	3 cut(s)	33, 197, 454
BseNI	ACTGG	2 cut(s)	192, 274
BseXI	GCAGC	3 cut(s)	109, 251, 397
BsgI	GTGCAG	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	273, 461, 531
BshNI	GGYRCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	5 cut(s)	138, 207, 414, 593, 657
BslI	CCNNNNNNNGG	3 cut(s)	33, 197, 454
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	273, 461, 531
BsoBI	CYCGRG	1 cut(s)	552
BspACI	CCGC	2 cut(s)	126, 213
BspANI	GGCC	3 cut(s)	273, 461, 531
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	202, 211, 544
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	192, 274
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	31, 532
BssT1I	CCWWGG	2 cut(s)	31, 532
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	91, 457, 566
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	39, 139, 610
BstF5I	GGATG	2 cut(s)	27, 510
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	614
BstMAI	GTCTC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 134, 248, 279, 419, 435
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	389, 655
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	109, 251, 397
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	273, 461, 531
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	27, 510
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	39, 139, 610
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	374, 460, 566
Csp6I	GTAC	2 cut(s)	201, 361
CviAII	CATG	2 cut(s)	263, 342
CviQI	GTAC	2 cut(s)	201, 361
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	31, 532
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	374, 566
Eco88I	CYCGRG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	31, 532
ErhI	CCWWGG	2 cut(s)	31, 532
FaeI	CATG	2 cut(s)	266, 345
FaiI	YATR	3 cut(s)	264, 343, 527
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	2 cut(s)	262, 341
Fnu4HI	GCNGC	4 cut(s)	123, 126, 240, 411
FokI	GGATG	2 cut(s)	14, 517
Fsp4HI	GCNGC	4 cut(s)	123, 126, 240, 411
FspBI	CTAG	3 cut(s)	32, 38, 676
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	4 cut(s)	123, 126, 240, 411
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	273, 461, 531
HapII	CCGG	5 cut(s)	138, 207, 414, 593, 657
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	2 cut(s)	266, 345
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	1 cut(s)	537
HpaII	CCGG	5 cut(s)	138, 207, 414, 593, 657
HphI	GGTGA	3 cut(s)	16, 379, 671
Hpy166II	GTNNAC	3 cut(s)	94, 374, 517
Hpy188I	TCNGA	1 cut(s)	542
Hpy188III	TCNNGA	3 cut(s)	170, 263, 484
Hpy8I	GTNNAC	3 cut(s)	94, 374, 517
HpyCH4III	ACNGT	3 cut(s)	91, 457, 566
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	17, 239, 332, 345, 636
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 134, 248, 279, 419, 435
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	266, 345
HspAI	GCGC	1 cut(s)	612
KpnI	GGTACC	1 cut(s)	204
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	407, 542, 658
Lsp1109I	GCAGC	3 cut(s)	109, 251, 397
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	32, 38, 676
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	85, 256, 659
MboII	GAAGA	3 cut(s)	13, 91, 302
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	4 cut(s)	54, 234, 400, 641
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	114, 645
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	128, 215
MspI	CCGG	5 cut(s)	138, 207, 414, 593, 657
MspR9I	CCNGG	2 cut(s)	391, 657
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 134, 248, 279, 419, 435
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	657
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	266, 345
NlaIV	GGNNCC	3 cut(s)	202, 211, 544
NmuCI	GTSAC	2 cut(s)	256, 659
PaeR7I	CTCGAG	1 cut(s)	552
PagI	TCATGA	1 cut(s)	262
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	124, 127, 241, 412
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	202, 211, 544
PspPI	GGNCC	3 cut(s)	374, 460, 566
PspXI	VCTCGAGB	1 cut(s)	552
PsrI	GAACNNNNNNTAC	4 cut(s)	193, 225, 386, 418
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	202, 362
RsaNI	GTAC	2 cut(s)	201, 361
SaqAI	TTAA	2 cut(s)	114, 645
SatI	GCNGC	4 cut(s)	123, 126, 240, 411
Sau96I	GGNCC	3 cut(s)	374, 460, 566
ScaI	AGTACT	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	391, 657
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	374, 566
SlaI	CTCGAG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	4 cut(s)	54, 234, 400, 641
SsiI	CCGC	2 cut(s)	126, 213
SspMI	CTAG	3 cut(s)	32, 38, 676
StyD4I	CCNGG	2 cut(s)	389, 655
StyI	CCWWGG	2 cut(s)	31, 532
TaaI	ACNGT	3 cut(s)	91, 457, 566
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	171, 553
TasI	AATT	4 cut(s)	54, 234, 400, 641
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	114, 645
Tru9I	TTAA	2 cut(s)	114, 645
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	256, 659
TseI	GCWGC	3 cut(s)	122, 239, 410
Tsp45I	GTSAC	2 cut(s)	256, 659
TspGWI	ACGGA	2 cut(s)	420, 511
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	374, 566
XhoI	CTCGAG	1 cut(s)	552
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	32, 38, 676
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.